Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i02
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)             304   4e-83
SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)             31   0.77 
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             30   1.8  
SB_12983| Best HMM Match : Moricin (HMM E-Value=7)                     29   3.1  
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  29   4.1  
SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_18775| Best HMM Match : DUF1409 (HMM E-Value=0.78)                  28   7.2  
SB_55095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score =  304 bits (747), Expect = 4e-83
 Identities = 150/218 (68%), Positives = 171/218 (78%)
 Frame = +1

Query: 103 MPLSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNK 282
           MP +CRFY+  YPEV+DVVMVNVRSIAEMGAYV+LLEYNNIEGM              NK
Sbjct: 1   MP-NCRFYKHIYPEVDDVVMVNVRSIAEMGAYVNLLEYNNIEGMILLSELSRRRIRSINK 59

Query: 283 LIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHY 462
           LIRVG+ E VVVIRVDKEKGYIDLSKRRVS E++ KC E++ KAK V SILRH AE+L Y
Sbjct: 60  LIRVGRNECVVVIRVDKEKGYIDLSKRRVSPEEVKKCEEKFTKAKTVYSILRHCAEILGY 119

Query: 463 ETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDVLLANIKR 642
           ET +Q EELY+KTAWYF++KYK   S+Y+ FK A  DPSVLDE  LDEE K+ LL NI+R
Sbjct: 120 ETDKQFEELYEKTAWYFDDKYKTPGSSYEAFKLAVADPSVLDELSLDEEMKNTLLNNIRR 179

Query: 643 KLTSQAVKIRADIECACYGYEGIDAVRAALKAGLALST 756
           +LT QAVKIRADIE ACYGYEGIDAV+ AL+ GL  ST
Sbjct: 180 RLTPQAVKIRADIEVACYGYEGIDAVKKALREGLECST 217


>SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)
          Length = 636

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 24/86 (27%), Positives = 42/86 (48%)
 Frame = -2

Query: 291 SDQFVNGSDTSSGKLR*QDHALYIIVF*KVDVCSHLCDGSNVHHHHIFNFRIFLLIKSTR 112
           SD F + + TS+ K    D+AL++ +  ++   SH+C   N+ H  +     FLL + T 
Sbjct: 497 SDGFASLNTTSATK----DNALFLNIIQQLPTRSHVCMACNILHLIVQKVSGFLLRRHTT 552

Query: 111 QRHLVYLFNSFLSVKY*IKKEYDETV 34
            R    + ++ LS    I+   DE +
Sbjct: 553 SREPPEVISNCLSELTDIETRTDEVL 578


>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
 Frame = +1

Query: 280 KLIRVGKTEPVVVIRVDKEKGYIDLSKR--RVSAEDIYKCTERYAKAKAVNSILRHVAEL 453
           +LI   K E +V   + K +  +   +R  R+  E+  +  ER  K + +  I+++ A+ 
Sbjct: 271 ELILKNKAEMIVSDVIRKARVIVQREEREERIKKEEKIREEERVKKQEKMEHIIQNQAQF 330

Query: 454 LHYETSEQLEELYKKTAWYFEEKYK-------KKASAYDFFKQAAVDPSVLDECGLDEET 612
           +  E   +   + K+    FE K          K +    F +   D   +DE G+ EET
Sbjct: 331 IVSEAIGKACGIVKRHRKDFERKMDLKWFELTSKNNKGALFTEEIADAKDIDEKGVQEET 390

Query: 613 KDVLLAN 633
           + +  AN
Sbjct: 391 EVISPAN 397


>SB_12983| Best HMM Match : Moricin (HMM E-Value=7)
          Length = 150

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 29/80 (36%), Positives = 38/80 (47%)
 Frame = +1

Query: 334 EKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKKTAWYF 513
           +K Y +L K   S  D  K +    K K ++   R V+E   YE  E LE L KK A   
Sbjct: 3   KKDYQNLQK---SLSDFTKPSIAVLKRKVIDYAQRSVSEFNKYEALEMLETL-KKVA--- 55

Query: 514 EEKYKKKASAYDFFKQAAVD 573
            +K  +K+S   F  QAA D
Sbjct: 56  RDKEDEKSSY--FHHQAAFD 73


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +1

Query: 463 ETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDVLLANIKR 642
           E  ++ EE+ KK A  ++EK KK    Y   K+ A       E  ++   +   LA +  
Sbjct: 365 ENFKKNEEILKKAARDYQEKLKKSEEKYQLLKKHA-------EEKIETRLRHAQLAKMYT 417

Query: 643 KLTSQAVKIRADIE-CACYGY 702
           K       +R  +E   CY Y
Sbjct: 418 KKYRGLFHVRVSLELVCCYSY 438


>SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/95 (24%), Positives = 41/95 (43%)
 Frame = +1

Query: 322 RVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKKT 501
           RVD   G  D S   +  ++I K   R A    +++ L HV  + + +T++ +  L +  
Sbjct: 362 RVDVVFGIPDSSDLALEFDNIKKFYTRLAGLLTISNRLAHVGIVRYSDTADMILPLDES- 420

Query: 502 AWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDE 606
             Y+ +    K S       + VDPS   +   D+
Sbjct: 421 --YYRDSVVNKISNMKLSGTSGVDPSKAIQVAADQ 453


>SB_18775| Best HMM Match : DUF1409 (HMM E-Value=0.78)
          Length = 356

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
 Frame = +1

Query: 280 KLIRVGKT---EPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAE 450
           KLI+ G     E  + I +  E+  I L    +  + I K   +    + + + L   A+
Sbjct: 144 KLIQEGSDLTLEKAIDIAITMEQSQIQLKTINIPLDGINKSPAQLMIGRRLKTSLPATAD 203

Query: 451 LL----HYETSEQLEELYKKTAWYFEEKY 525
           LL      E +E+L+++ +K   Y+++KY
Sbjct: 204 LLKPPGQEEITEKLKKIKEKQKDYYDQKY 232


>SB_55095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
 Frame = +1

Query: 397 ERYAKAKAVNSILRHVAELLHYETSEQLEELYKKTAWYFEEKYKKKASA-------YDFF 555
           ER       N ++ +VA+ L   ++ +   L K        KYK KA         + + 
Sbjct: 64  EREGSDAFANCVVNYVADFLRNRSTSRSLGLTKTRE--DSGKYKTKARVTIPCHNNHAWA 121

Query: 556 KQAAVDPSVLDECGLDEETKDVLLANIKRKLTSQAVKIR 672
           K     P++    GLD E +D L +  +  LTS A K+R
Sbjct: 122 KLPTEPPAITSVHGLDFEAEDELRSLCQTALTSAATKMR 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,658,933
Number of Sequences: 59808
Number of extensions: 407442
Number of successful extensions: 1252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)