Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i02
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.19 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 327 HSDYDNRFSLSHSDQFVNG-SDTSSGKLR*QD 235
           H+D  N  SL+H DQ   G + T SGK R Q+
Sbjct: 795 HTDIGNSQSLAHQDQCCPGFTMTKSGKTRHQN 826


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/71 (19%), Positives = 34/71 (47%)
 Frame = +1

Query: 349 DLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKKTAWYFEEKYK 528
           D+ +    ++ I + TE   K   ++S++    + LHYET   +    ++  W +  + +
Sbjct: 678 DICQLLKDSQYIREQTESDDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHRAR 737

Query: 529 KKASAYDFFKQ 561
            + S ++ + Q
Sbjct: 738 SE-SEFEMYHQ 747


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 394 CTCIYLQQIHDVSISLCILFLCP 326
           C CIY+Q I+         +LCP
Sbjct: 183 CKCIYVQSINLCMAGRLFGYLCP 205


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 730 KLLVQHQCLHNHSK 689
           KL V H C+ NH K
Sbjct: 92  KLHVSHTCIENHLK 105


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 354 IETSCIC*RYIQVH-RTLRKSKSSKLD 431
           I  SCIC R+I  H + L  S   K D
Sbjct: 484 IHKSCICVRFIAEHTKMLEDSTKVKED 510


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 354 IETSCIC*RYIQVH-RTLRKSKSSKLD 431
           I  SCIC R+I  H + L  S   K D
Sbjct: 484 IHKSCICVRFIAEHTKMLEDSTKVKED 510


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 715 HQCLHNHSKHTQCQHESSLLA 653
           H C HN   H   + E+ LLA
Sbjct: 23  HHCHHNGVVHRDLKPENLLLA 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,269
Number of Sequences: 438
Number of extensions: 3325
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)