Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i02
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40290.1 68415.m04960 eukaryotic translation initiation facto... 194 7e-50
At2g40290.2 68415.m04961 eukaryotic translation initiation facto... 191 5e-49
At5g05470.1 68418.m00589 eukaryotic translation initiation facto... 190 7e-49
At3g59960.1 68416.m06692 SET domain-containing protein low simil... 33 0.16
At3g23700.1 68416.m02980 S1 RNA-binding domain-containing protei... 31 0.63
At3g59670.1 68416.m06657 expressed protein ; expression supporte... 29 4.4
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote... 29 4.4
At1g74830.1 68414.m08670 expressed protein contains Pfam profile... 28 5.9
>At2g40290.1 68415.m04960 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to Swiss-Prot:P05198 eukaryotic
translation initiation factor 2 subunit 1 (Eukaryotic
translation initiation factor 2 alpha subunit)
(eIF-2-alpha) (EIF- 2alpha) (EIF-2A) [Homo sapiens]
Length = 344
Score = 194 bits (472), Expect = 7e-50
Identities = 111/229 (48%), Positives = 142/229 (62%), Gaps = 20/229 (8%)
Frame = +1
Query: 109 LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 288
L CR Y+ KYPEV+ VM+ V++IA+MGAYV LLEYNNIEGM + LI
Sbjct: 8 LECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLI 67
Query: 289 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 468
+VG+ EPV+V+RVDKEKGYIDLSKRRVS EDI C ERY K+K V+SI+RHVAE L
Sbjct: 68 KVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETL---- 123
Query: 469 SEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP-SVL-------DECGLD------- 603
S LE+LY W Y++ A++ FK DP SVL E G D
Sbjct: 124 SIDLEDLYVNIGW---PLYRRHGHAFEAFKILVTDPDSVLGPLTREIKEVGPDGQEVTKV 180
Query: 604 -----EETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRAALK 735
EE KD L+ NI+R++T Q +KIRADIE C+ ++G+ ++ A+K
Sbjct: 181 VPAVTEEVKDALVKNIRRRMTPQPMKIRADIELKCFQFDGVVHIKEAMK 229
>At2g40290.2 68415.m04961 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to Swiss-Prot:P05198 eukaryotic
translation initiation factor 2 subunit 1 (Eukaryotic
translation initiation factor 2 alpha subunit)
(eIF-2-alpha) (EIF- 2alpha) (EIF-2A) [Homo sapiens]
Length = 241
Score = 191 bits (465), Expect = 5e-49
Identities = 111/235 (47%), Positives = 143/235 (60%), Gaps = 20/235 (8%)
Frame = +1
Query: 109 LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 288
L CR Y+ KYPEV+ VM+ V++IA+MGAYV LLEYNNIEGM + LI
Sbjct: 8 LECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLI 67
Query: 289 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 468
+VG+ EPV+V+RVDKEKGYIDLSKRRVS EDI C ERY K+K V+SI+RHVAE L
Sbjct: 68 KVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETL---- 123
Query: 469 SEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP-SVL-------DECGLD------- 603
S LE+LY W Y++ A++ FK DP SVL E G D
Sbjct: 124 SIDLEDLYVNIGW---PLYRRHGHAFEAFKILVTDPDSVLGPLTREIKEVGPDGQEVTKV 180
Query: 604 -----EETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRAALKAGLALS 753
EE KD L+ NI+R++T Q +KIRADIE C+ ++G+ ++ L+L+
Sbjct: 181 VPAVTEEVKDALVKNIRRRMTPQPMKIRADIELKCFQFDGVVHIKVVSLIRLSLT 235
>At5g05470.1 68418.m00589 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to SWISS-PROT:P20459 eukaryotic
translation initiation factor 2 alpha subunit (eIF-2-
alpha) [Saccharomyces cerevisiae]; identical to cDNA
cohesin GI:6682280
Length = 344
Score = 190 bits (464), Expect = 7e-49
Identities = 109/236 (46%), Positives = 144/236 (61%), Gaps = 20/236 (8%)
Frame = +1
Query: 109 LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 288
L CR Y+ +YP+V+ VM+ V++IA+MGAYV LLEYNNIEGM + LI
Sbjct: 8 LECRMYESRYPDVDMAVMIQVKTIADMGAYVSLLEYNNIEGMILFSELSRRRIRSISSLI 67
Query: 289 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 468
+VG+TEPV+V+RVD+E+GYIDLSKRRVS ED C ERY K+K V+SI+RHVAE + +
Sbjct: 68 KVGRTEPVMVLRVDRERGYIDLSKRRVSDEDKEACEERYNKSKLVHSIMRHVAETVGVD- 126
Query: 469 SEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP-SVLD-------ECGLD------- 603
LEELY W YKK A++ FK DP SV D E G D
Sbjct: 127 ---LEELYVNIGWPL---YKKHGHAFEAFKIVVTDPDSVFDALTREVKETGPDGVEVTKV 180
Query: 604 -----EETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRAALKAGLALST 756
EE KD L +I+R++T Q +KIRADIE C+ ++G+ ++ A+K A+ T
Sbjct: 181 VPAVSEELKDAFLKDIRRRMTPQPMKIRADIELKCFQFDGVLHIKEAMKKAEAVGT 236
>At3g59960.1 68416.m06692 SET domain-containing protein low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain
Length = 352
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 388 KCTERYAKAKAVNSILRHVAELLHYETSEQLEE---LYKKTAWYFEEKYKKKASAYDFFK 558
K ++R K++ + + + EL E+ ++L ++ K Y ++K KKK + F
Sbjct: 6 KGSDRNQIRKSLRKLKKQIGELEKLESPDRLNNVKPIFIKRNIYLKKKLKKKVKDHGIFC 65
Query: 559 QAAVDPSVLDECGLD 603
++DP CG D
Sbjct: 66 SCSLDPGSSTLCGSD 80
>At3g23700.1 68416.m02980 S1 RNA-binding domain-containing protein
contains Pfam domain, PF00575: S1 RNA binding domain
Length = 392
Score = 31.5 bits (68), Expect = 0.63
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +1
Query: 145 VEDVVMVNVRSIAEMGAYVHLL---EYNNIEGMXXXXXXXXXXXXXXNKLIRVGKTEPVV 315
V DV V S+ + GA++HL ++ G+ ++R G V+
Sbjct: 195 VGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVI 254
Query: 316 VIRVDKEKGYIDLSKRRVSAEDIYKCTER 402
V +DKEK I LS +++ + + + ++
Sbjct: 255 VTNIDKEKSRITLSIKQLEDDPLLETLDK 283
>At3g59670.1 68416.m06657 expressed protein ; expression supported
by MPSS
Length = 510
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 520 KYKKKASAYDFFK-QAAVDPSVLDECG 597
+Y K+ YD K +A +DPSVL+ CG
Sbjct: 159 EYPKELELYDQEKLEANIDPSVLESCG 185
>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 906
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -3
Query: 362 RFDKSMYPFSLSTLITTTGSVFPTRINLLMDLIRLLESSDSKIMPSILLYSR 207
RF KSM + I+ G V + ++L DLI ++ SK+M +++ +SR
Sbjct: 744 RFQKSMKKLKSISFISICGGVALSNKDIL-DLIERKKNLTSKVMDALIKFSR 794
>At1g74830.1 68414.m08670 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 542
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 316 VIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQL 480
V+ D+EKG SK + +++ + TER + ++ +L+H+A++L E +
Sbjct: 467 VVSADEEKG--SESKEGI-VKELSEITERLSTLQSNGDLLKHIADVLDVSEGEAI 518
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,065
Number of Sequences: 28952
Number of extensions: 277985
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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