Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i01
(767 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 180 4e-44
UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 144 2e-33
UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=1... 130 4e-29
UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole geno... 124 2e-27
UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM doma... 120 4e-26
UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:... 101 2e-24
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ... 113 5e-24
UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3, p... 112 8e-24
UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;... 110 3e-23
UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 109 7e-23
UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266, w... 106 5e-22
UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145, w... 106 5e-22
UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 93 7e-18
UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 91 3e-17
UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 87 6e-16
UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR RIBONUCLEOP... 83 1e-14
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 73 8e-12
UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY0350... 73 1e-11
UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core p... 69 2e-10
UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotei... 60 6e-08
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 58 3e-07
UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1; ... 58 3e-07
UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm... 55 2e-06
UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm... 54 3e-06
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 53 7e-06
UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3; ... 53 9e-06
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 51 3e-05
UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putati... 51 3e-05
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 50 8e-05
UniRef50_Q4QBP1 Cluster: Small nuclear ribonucleoprotein, putati... 49 1e-04
UniRef50_Q4Q224 Cluster: Small nuclear ribonucleaoprotein, putat... 49 1e-04
UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1; ... 47 4e-04
UniRef50_A2E4T4 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila melanog... 45 0.002
UniRef50_Q9SY09 Cluster: Small nuclear riboprotein Sm-D1; n=9; E... 44 0.003
UniRef50_Q751K2 Cluster: AGL296Wp; n=1; Eremothecium gossypii|Re... 44 0.006
UniRef50_A4RMI1 Cluster: Putative uncharacterized protein; n=3; ... 42 0.013
UniRef50_A0CSI7 Cluster: Chromosome undetermined scaffold_26, wh... 42 0.017
UniRef50_Q9VU02 Cluster: Probable small nuclear ribonucleoprotei... 42 0.022
UniRef50_Q10013 Cluster: Probable small nuclear ribonucleoprotei... 42 0.022
UniRef50_Q5CRM6 Cluster: Small nuclear ribonucleoprotein D1. SM ... 41 0.039
UniRef50_Q5KJW6 Cluster: Glycine rich protein, putative; n=2; Di... 40 0.068
UniRef50_A3LPF4 Cluster: Predicted protein; n=3; Saccharomycetac... 40 0.068
UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7... 39 0.16
UniRef50_UPI0000E480CE Cluster: PREDICTED: similar to LSM10, U7 ... 38 0.27
UniRef50_Q4SJ08 Cluster: Chromosome 21 SCAF14577, whole genome s... 38 0.27
UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative; ... 38 0.27
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 38 0.27
UniRef50_Q8SSB9 Cluster: U6 snRNA ASSOCIATED SM-LIKE PROTEIN; n=... 36 0.84
UniRef50_A5AUJ3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 1.9
UniRef50_Q6BXY3 Cluster: Similar to sp|Q02260 Saccharomyces cere... 35 2.6
UniRef50_Q254S4 Cluster: Adherence factor; n=2; Chlamydophila|Re... 34 3.4
UniRef50_A4RU45 Cluster: Predicted protein; n=1; Ostreococcus lu... 34 3.4
UniRef50_Q6E6A1 Cluster: Small nuclear ribonucleoprotein D3-like... 34 3.4
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 34 3.4
UniRef50_UPI00015BACE3 Cluster: Like-Sm ribonucleoprotein, core;... 34 4.5
UniRef50_Q22HI5 Cluster: EGF-like domain containing protein; n=1... 34 4.5
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 4.5
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 34 4.5
UniRef50_Q9LMW8 Cluster: F5M15.7; n=3; Arabidopsis thaliana|Rep:... 33 5.9
UniRef50_Q01B18 Cluster: Small nuclear riboprotein Sm-D1-like pr... 33 5.9
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 33 5.9
UniRef50_Q8IIA8 Cluster: Small nuclear ribonucleoprotein D1, put... 33 7.8
UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=40; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein Sm D3 - Homo sapiens (Human)
Length = 126
Score = 180 bits (438), Expect = 4e-44
Identities = 88/103 (85%), Positives = 92/103 (89%), Gaps = 3/103 (2%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYRDGRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 315 VYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 434
VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=3; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D3 - Caenorhabditis elegans
Length = 136
Score = 144 bits (350), Expect = 2e-33
Identities = 66/86 (76%), Positives = 75/86 (87%)
Frame = +3
Query: 138 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 317
S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+ VT+RDGR QL+NV
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62
Query: 318 YIRGSKIRFLILPDMLKNAPMFKRQG 395
+IRG+KIRF+ILPDMLKNAPMFK G
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIG 88
>UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=12;
Eukaryota|Rep: Pre-mRNA splicing factor, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 124
Score = 130 bits (314), Expect = 4e-29
Identities = 59/97 (60%), Positives = 75/97 (77%)
Frame = +3
Query: 138 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 317
++GVP+K+LHE+ GH++T E TGE+YRGKL+EAED +N + +TVT RDGRV+QLE V
Sbjct: 3 NLGVPVKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTARDGRVSQLEQV 62
Query: 318 YIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSA 428
YIRGS IRF+I+PD+L APMFKR G GRG A
Sbjct: 63 YIRGSMIRFIIVPDLLAQAPMFKRIGPNAMRGRGIGA 99
>UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole genome
shotgun sequence; n=6; Eukaryota|Rep: Chromosome chr6
scaffold_28, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 199
Score = 124 bits (300), Expect = 2e-27
Identities = 51/87 (58%), Positives = 72/87 (82%)
Frame = +3
Query: 129 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 308
++ S+G+P+K+LHEA GHVV E +GE+YRG +IE +DN NCQ+ +T T +DG+V+QL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVIVELKSGELYRGSMIECKDNWNCQLENITFTVKDGKVSQL 60
Query: 309 ENVYIRGSKIRFLILPDMLKNAPMFKR 389
E+V+IRG K+RF+++PDM KNAPMFKR
Sbjct: 61 EHVFIRGIKVRFMVIPDMRKNAPMFKR 87
>UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM domain;
n=5; Apicomplexa|Rep: Small nucealr riboprotein SMD3, SM
domain - Cryptosporidium parvum Iowa II
Length = 143
Score = 120 bits (289), Expect = 4e-26
Identities = 52/91 (57%), Positives = 67/91 (73%)
Frame = +3
Query: 126 NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQ 305
++NM+IG+P+K+L+E GH+VT E +G++YRG L EDNMNC + V T RDG+
Sbjct: 20 HINMTIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVS 79
Query: 306 LENVYIRGSKIRFLILPDMLKNAPMFKRQGN 398
LE Y+RGS+IRF ILPDMLKNAPMFK N
Sbjct: 80 LEQCYLRGSQIRFCILPDMLKNAPMFKLAAN 110
>UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:
F5M15.9 - Arabidopsis thaliana (Mouse-ear cress)
Length = 207
Score = 101 bits (242), Expect(2) = 2e-24
Identities = 41/71 (57%), Positives = 59/71 (83%)
Frame = +3
Query: 129 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 308
++ S+G+P+K+LHEA GH+VT E +GE+YRG +IE EDN NCQ+ +T T +DG+V+QL
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60
Query: 309 ENVYIRGSKIR 341
E+V+IRGSK+R
Sbjct: 61 EHVFIRGSKVR 71
Score = 33.9 bits (74), Expect(2) = 2e-24
Identities = 12/17 (70%), Positives = 17/17 (100%)
Frame = +3
Query: 339 RFLILPDMLKNAPMFKR 389
RF+++PD+LK+APMFKR
Sbjct: 102 RFMVIPDILKHAPMFKR 118
>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
(snrnp),putative; n=1; Eimeria tenella|Rep: small
nuclear ribonucleoprotein (snrnp),putative - Eimeria
tenella
Length = 125
Score = 113 bits (272), Expect = 5e-24
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +3
Query: 138 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 317
S+G+P+K+LHE GH +T ET TG +YRG L AEDNMN + VTVT++DG+V LE V
Sbjct: 6 SVGIPVKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHKDGKVLSLEQV 65
Query: 318 YIRGSKIRFLILPDMLKNAPMFK 386
YIRGS+++ +I PDML++APMFK
Sbjct: 66 YIRGSQVQMVIFPDMLRHAPMFK 88
>UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3,
putative; n=12; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmD3, putative - Aspergillus clavatus
Length = 136
Score = 112 bits (270), Expect = 8e-24
Identities = 50/77 (64%), Positives = 65/77 (84%)
Frame = +3
Query: 138 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 317
+IG+PIK+L+EA+GHVVT E +G VYRGKL+EAEDNMN Q+ +TVT RDGRV+ L+ V
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 66
Query: 318 YIRGSKIRFLILPDMLK 368
YIRGS ++F I+PDML+
Sbjct: 67 YIRGSHVKFFIVPDMLR 83
>UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 111
Score = 110 bits (265), Expect = 3e-23
Identities = 43/84 (51%), Positives = 66/84 (78%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
M+IG P+K+ HE++G +VT E TGE YRG+++E EDNMNCQ+ VT+T +DG ++ E
Sbjct: 1 MNIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEY 60
Query: 315 VYIRGSKIRFLILPDMLKNAPMFK 386
++IRG+++RF++LP+M KN+P K
Sbjct: 61 IFIRGNQVRFVVLPEMFKNSPCLK 84
>UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=11; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein Sm D3 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 101
Score = 109 bits (262), Expect = 7e-23
Identities = 42/87 (48%), Positives = 68/87 (78%)
Frame = +3
Query: 144 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYI 323
G+P+K+L+EA+GH+V+ E TG YRGKL+E+ED+MN Q+ V T G V ++ +++
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 324 RGSKIRFLILPDMLKNAPMFKRQGNKP 404
RGS+I+F+++PD+LKNAP+FK+ ++P
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFKKNSSRP 91
>UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_266,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 363
Score = 106 bits (255), Expect = 5e-22
Identities = 46/85 (54%), Positives = 64/85 (75%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
MS+GVP+K++HEA H+VT E TGE++ G + EAED MN ++ V + RDGR LE
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQ 60
Query: 315 VYIRGSKIRFLILPDMLKNAPMFKR 389
VY+RGS+IRF+++PD+ K APMFK+
Sbjct: 61 VYLRGSQIRFVVIPDVFKYAPMFKK 85
>UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145,
whole genome shotgun sequence; n=5; Eukaryota|Rep:
Chromosome undetermined scaffold_145, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 106 bits (255), Expect = 5e-22
Identities = 46/85 (54%), Positives = 64/85 (75%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
MS+GVP+K++HEA H+VT E TGE++ G + EAED MN ++ V + RDGR LE
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQ 60
Query: 315 VYIRGSKIRFLILPDMLKNAPMFKR 389
VY+RGS+IRF+++PD+ K APMFK+
Sbjct: 61 VYLRGSQIRFVVIPDVFKYAPMFKK 85
>UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP),
putative; n=4; Plasmodium|Rep: Small nuclear
ribonucleoprotein (SnRNP), putative - Plasmodium
chabaudi
Length = 129
Score = 93.1 bits (221), Expect = 7e-18
Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 13/102 (12%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLI-------------EAEDNMNCQMTLVT 275
MS+G PIK++HE GH ++ ET +G +YRG L+ AEDNMNC ++ VT
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGTLVCSFMLILYFLKDLFAEDNMNCLLSNVT 60
Query: 276 VTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK 401
V +DG+ LE VYIRG + F+I PDML+ AP+FK +K
Sbjct: 61 VVKQDGKQVLLEQVYIRGGSVSFMIFPDMLRYAPIFKINKSK 102
>UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 112
Score = 91.1 bits (216), Expect = 3e-17
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
MS G+PIK+LHEA VV NTG+ YRG L EDNMNC +T V T +DG+ + +
Sbjct: 1 MSNGIPIKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNVVHTQKDGQQIKFDK 60
Query: 315 VYIRGSKIRFLILPDMLKNAPMFK 386
Y+RGS I + LP+ML NA +FK
Sbjct: 61 TYVRGSNILYFDLPEMLLNARLFK 84
>UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 119
Score = 86.6 bits (205), Expect = 6e-16
Identities = 42/77 (54%), Positives = 51/77 (66%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
I +LHEA+G VVT ET GE+YRG L +ED MN ++ VT T G + + VYIRGS
Sbjct: 12 IAILHEADGFVVTIETKQGEMYRGTLFGSEDTMNVELHDVTYTNSKGVDSHKDKVYIRGS 71
Query: 333 KIRFLILPDMLKNAPMF 383
I F +LPDM NAPMF
Sbjct: 72 NIVFFVLPDMFANAPMF 88
>UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR
RIBONUCLEOPROTEIN D3; n=1; Encephalitozoon cuniculi|Rep:
Similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 -
Encephalitozoon cuniculi
Length = 87
Score = 82.6 bits (195), Expect = 1e-14
Identities = 39/83 (46%), Positives = 59/83 (71%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
M++ VP+K+LHE++G +VT ET++G++YRG++ E +D MN + V VT + +++ E
Sbjct: 1 MAVTVPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSSLSRKE- 59
Query: 315 VYIRGSKIRFLILPDMLKNAPMF 383
V IRGS IRF +LP LK AP F
Sbjct: 60 VLIRGSSIRFFVLPPALKFAPFF 82
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 72.9 bits (171), Expect = 8e-12
Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
M+ +PIKVL +A V+ E TGEVY G + E ++NMN + T T R G+ ++++
Sbjct: 1 MAESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDS 60
Query: 315 VYIRGSKIRFLILPDMLKNAPMFKRQGN-----KPTAGRGK 422
V++RGS I F LPD L+ +P R G K T G GK
Sbjct: 61 VFVRGSNIVFFQLPDALQTSPALLRAGEVVSKAKDTRGDGK 101
>UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY03502;
n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY03502 - Plasmodium yoelii yoelii
Length = 215
Score = 72.5 bits (170), Expect = 1e-11
Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
MS+G PIK++HE GH ++ ET +G +YRG L+ AEDNMNC ++ VTV +DG+ LE
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGILLFAEDNMNCLLSNVTVVKQDGKQILLE- 59
Query: 315 VYIRGSKI--RFLILPDM 362
V KI F+ LP +
Sbjct: 60 VCENSKKITKHFVFLPSL 77
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 306 LENVYIRGSKIRFLILPDMLKNAPMFKRQGNK 401
L+ VYIRG + F+I PDML+ AP+FK +K
Sbjct: 114 LQQVYIRGGSVSFMIFPDMLRYAPIFKVNKSK 145
>UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core
protein required for pre-mRNA splicing; n=1;
Bigelowiella natans|Rep: Spliceosomal snRNA-associated
Sm core protein required for pre-mRNA splicing -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 141
Score = 68.5 bits (160), Expect = 2e-10
Identities = 25/86 (29%), Positives = 59/86 (68%)
Frame = +3
Query: 126 NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQ 305
+ + ++G+P+K++H+AE H ++ + G++ G+L+ +EDN N + V + ++ + ++
Sbjct: 3 STSKNVGIPLKLIHQAEKHQISVKLKDGKLLIGELMNSEDNWNLCLKKVIIKEKENKSSK 62
Query: 306 LENVYIRGSKIRFLILPDMLKNAPMF 383
++RG++I F+I+P++LK +P+F
Sbjct: 63 SMLYFVRGNQITFIIIPEILKYSPLF 88
>UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotein
Sm D3; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein Sm D3 - Guillardia theta (Cryptomonas
phi)
Length = 79
Score = 60.1 bits (139), Expect = 6e-08
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +3
Query: 159 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKI 338
+L E++ +V+T E G +YRGKLI E+NMNC + V + +V +L V++RGS I
Sbjct: 9 ILRESKPYVITIECKNGFIYRGKLIHIEENMNCILKEAFV-IKKKKVQKLTLVFLRGSNI 67
Query: 339 RFLILPDML 365
I+PD+L
Sbjct: 68 SMFIIPDIL 76
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 57.6 bits (133), Expect = 3e-07
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Frame = +3
Query: 144 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVY 320
G+P+ +L A+GH + E GE Y G L+ + MN + V T +DG R ++ Y
Sbjct: 87 GLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 146
Query: 321 IRGSKIRFLILPDML--KNAPMFKRQGNK--PTAGRGK 422
IRG+ I++L +PD + K K + ++ P GRG+
Sbjct: 147 IRGNTIKYLRVPDEVIDKVQEETKNRADRKPPGVGRGR 184
>UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 80
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = +3
Query: 249 MNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKN 371
MN Q+ +TVT RDGRV+ LE VYIRGS +R+ I+PDML++
Sbjct: 1 MNVQLKDITVTARDGRVSHLEQVYIRGSHVRYFIVPDMLRS 41
>UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=5; Coelomata|Rep: U6 snRNA-associated Sm-like protein
LSm4 - Homo sapiens (Human)
Length = 139
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 324 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 419
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=128; Eukaryota|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Mus musculus (Mouse)
Length = 137
Score = 54.4 bits (125), Expect = 3e-06
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 324 RGSKIRFLILPD 359
RGS I++L +PD
Sbjct: 62 RGSTIKYLRIPD 73
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 53.2 bits (122), Expect = 7e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L A+GH + E GE Y G L+ + MN + V T +DG + ++ YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 324 RGSKIRFLILPD 359
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 690
Score = 52.8 bits (121), Expect = 9e-06
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L A+GH + E GE G L+ + MN + V T DG + +L +Y+
Sbjct: 3 LPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYV 62
Query: 324 RGSKIRFLILPDMLKNAPMFKRQGNKPT-AGRG 419
+G+ I++L +PD + + ++QG + GRG
Sbjct: 63 KGNNIKYLRMPDEIIDLVKDQQQGQQSNYRGRG 95
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 51.2 bits (117), Expect = 3e-05
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L +GH + E GE Y G L+ ++ MN + V T +D + ++++ YI
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYI 61
Query: 324 RGSKIRFLILPD 359
RG+ I+++ +PD
Sbjct: 62 RGNTIKYISVPD 73
>UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Trypanosoma brucei|Rep: Small nuclear
ribonucleoprotein, putative - Trypanosoma brucei
Length = 131
Score = 51.2 bits (117), Expect = 3e-05
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNM-NCQMTLVTVTYRDGRVAQLENVYI 323
+P++ + EA G +V ET G VY GKL++ + + ++ V +RD ++ V++
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLDAICGDIELIDVRCQHRDSSLSVEGRVFL 66
Query: 324 RGSKIRFLILPDMLKNAP 377
+GS +R + LP LK AP
Sbjct: 67 KGSSVRLVHLPSDLKRAP 84
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 49.6 bits (113), Expect = 8e-05
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 159 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYIRGSK 335
+L A GH + E +GE G L+ + MN + V T DG + +L +Y+RGS
Sbjct: 66 LLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGST 125
Query: 336 IRFLILPDMLKNAPMFKRQGNKPTAGRG 419
I++L +PD + + K Q K A RG
Sbjct: 126 IKYLRVPDEI--VDVVKDQQVKDQANRG 151
>UniRef50_Q4QBP1 Cluster: Small nuclear ribonucleoprotein, putative;
n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 103
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/93 (25%), Positives = 42/93 (45%)
Frame = +3
Query: 144 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYI 323
G I L + G +V E + G++ + NMN M+ +T + ++E +
Sbjct: 11 GTLITFLQQLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHAKITSKGKNPVEVEEYMV 70
Query: 324 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGK 422
RGS IR++I+P+ L + K+ K K
Sbjct: 71 RGSTIRYIIMPESLNTYDILKQASTKKNGASKK 103
>UniRef50_Q4Q224 Cluster: Small nuclear ribonucleaoprotein,
putative; n=3; Leishmania|Rep: Small nuclear
ribonucleaoprotein, putative - Leishmania major
Length = 141
Score = 48.8 bits (111), Expect = 1e-04
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 132 NMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNM-NCQMTLVTVTYRDGRVAQL 308
N + +P ++ EA VT ET G+VY+G L + + N ++ V +D
Sbjct: 6 NATKDIPSSLVFEAMHSRVTIETVEGDVYKGTLAAFDISRGNIELVEVRHQAKDSTFGFY 65
Query: 309 ENVYIRGSKIRFLILPDMLKNAP 377
E V +RGSKIR ++LP +K AP
Sbjct: 66 ERVTVRGSKIRIVLLPPEMKAAP 88
>UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1;
n=37; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D1 - Homo sapiens (Human)
Length = 119
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
++ L + VT E G G + + +MN + V +T ++ QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 333 KIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 422
IR+ ILPD ++ P K + + AGRG+
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>UniRef50_A2E4T4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 111
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
+ L + VT E V +G ++ + MN + LV + +LEN+ IRG+
Sbjct: 4 VHFLRKLVRETVTVELKDNTVIKGTVVGVDSAMNTHLRLVHIKAPGQEEKRLENLTIRGA 63
Query: 333 KIRFLILPDML 365
IR++ILPD+L
Sbjct: 64 SIRYVILPDVL 74
>UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila
melanogaster RE35747p; n=1; Yarrowia lipolytica|Rep:
Similar to tr|Q8IGS9 Drosophila melanogaster RE35747p -
Yarrowia lipolytica (Candida lipolytica)
Length = 131
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L+ A+G + E +GE RG L++ + MN + V G A + Y+
Sbjct: 4 LPLSLLNAAQGQPMLVELKSGESLRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYV 63
Query: 324 RGSKIRFLILPDML 365
RGS I+ L LPD L
Sbjct: 64 RGSNIKALQLPDEL 77
>UniRef50_Q9SY09 Cluster: Small nuclear riboprotein Sm-D1; n=9;
Eukaryota|Rep: Small nuclear riboprotein Sm-D1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 116
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
++ L + V+ E G + G + + +MN + V +T + L+++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63
Query: 333 KIRFLILPDMLKNAPMF-----KRQGNKPTAGR 416
IR+ ILPD L + + + KPTAG+
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96
>UniRef50_Q751K2 Cluster: AGL296Wp; n=1; Eremothecium gossypii|Rep:
AGL296Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 168
Score = 43.6 bits (98), Expect = 0.006
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L A+G + E GE G+L+ ++ MN +TL +V + + QL +Y+
Sbjct: 2 LPLYLLTNAKGQKLFIELKNGETIEGELVNVDNWMN--LTLQSVVHAGSDQTLQLPEIYV 59
Query: 324 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKS 425
RGS I+++ L D + K+Q N G G +
Sbjct: 60 RGSFIKYIRLQDDI--IEKVKQQLNSGKDGSGSN 91
>UniRef50_A4RMI1 Cluster: Putative uncharacterized protein; n=3;
Fungi/Metazoa group|Rep: Putative uncharacterized
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 125
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
++ L + VT E G + G + MN + V +T R L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNIRGS 63
Query: 333 KIRFLILPDML 365
IR+ ILPD L
Sbjct: 64 TIRYYILPDSL 74
>UniRef50_A0CSI7 Cluster: Chromosome undetermined scaffold_26, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_26,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 128
Score = 41.9 bits (94), Expect = 0.017
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 150 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQ-LENVYIR 326
P+ +L A+G V E G+ Y GKL + MN ++T V T +DG ++ + I+
Sbjct: 6 PLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNVKLTNVKHTSKDGNSFHGIKELLIK 65
Query: 327 GSKIRFLIL-PDMLKNA 374
G+ I++ L PD K A
Sbjct: 66 GNSIKYFRLNPDAEKKA 82
>UniRef50_Q9VU02 Cluster: Probable small nuclear ribonucleoprotein
Sm D1; n=20; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D1 - Drosophila melanogaster (Fruit
fly)
Length = 124
Score = 41.5 bits (93), Expect = 0.022
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
++ L + VT E G G + + MN + V +T ++ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63
Query: 333 KIRFLILPDML 365
IR+ ILPD L
Sbjct: 64 NIRYFILPDSL 74
>UniRef50_Q10013 Cluster: Probable small nuclear ribonucleoprotein
Sm D1; n=10; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D1 - Caenorhabditis elegans
Length = 126
Score = 41.5 bits (93), Expect = 0.022
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
++ L + V E G G ++ + MN + V++T ++ +L+ + IRG+
Sbjct: 4 VRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63
Query: 333 KIRFLILPDML 365
IR++ILPD L
Sbjct: 64 NIRYIILPDPL 74
>UniRef50_Q5CRM6 Cluster: Small nuclear ribonucleoprotein D1. SM
domain containing protein; n=2; Cryptosporidium|Rep:
Small nuclear ribonucleoprotein D1. SM domain containing
protein - Cryptosporidium parvum Iowa II
Length = 137
Score = 40.7 bits (91), Expect = 0.039
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
I+ L + + V E G + +G ++ + +MN + V ++ + L + +RG+
Sbjct: 15 IRFLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNPVSLSQITVRGN 74
Query: 333 KIRFLILPDML 365
IR+ ILPD L
Sbjct: 75 TIRYFILPDSL 85
>UniRef50_Q5KJW6 Cluster: Glycine rich protein, putative; n=2;
Dikarya|Rep: Glycine rich protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 117
Score = 39.9 bits (89), Expect = 0.068
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L A+G + E G + G L+E + MN + V T DG R +++ ++I
Sbjct: 2 LPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFI 61
Query: 324 RGSKIR-FLILPDMLKNAPMFKRQGNKPTAGRG 419
+G+ I+ F I ++L+ A + + RG
Sbjct: 62 KGNIIKYFRIADNILEQAAEEQDKARAANRARG 94
>UniRef50_A3LPF4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 147
Score = 39.9 bits (89), Expect = 0.068
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRV-AQLENVYI 323
+P+ +L A+ + E GE G L+ + MN + V T +G ++ VYI
Sbjct: 2 LPLYLLTAAKTKQILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVYI 61
Query: 324 RGSKIRFLILPD 359
RG+ I++L LP+
Sbjct: 62 RGNHIKYLRLPE 73
>UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7;
Eukaryota|Rep: Small nuclear ribonucleoprotein D1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 93
Score = 38.7 bits (86), Expect = 0.16
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +3
Query: 249 MNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPT 407
MN + V +T ++ QLE++ IRG+ IR+ ILPD ++ P K + +
Sbjct: 10 MNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREAV 69
Query: 408 AGRGK 422
AGRG+
Sbjct: 70 AGRGR 74
>UniRef50_UPI0000E480CE Cluster: PREDICTED: similar to LSM10, U7
small nuclear RNA associated; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to LSM10, U7 small
nuclear RNA associated - Strongylocentrotus purpuratus
Length = 124
Score = 37.9 bits (84), Expect = 0.27
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +3
Query: 159 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKI 338
+L G + T E G +++ + MN M+ V DG +++++I+ S +
Sbjct: 20 LLRAVVGRITTVELRNECSATGYVVDVDGFMNVTMSKVLFVNMDGEKTHMDSIFIQASLV 79
Query: 339 RFLILPDMLKNAPMFKRQ 392
R++ +PD + K++
Sbjct: 80 RYVQIPDDINMVKAMKKE 97
>UniRef50_Q4SJ08 Cluster: Chromosome 21 SCAF14577, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 21
SCAF14577, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 37.9 bits (84), Expect = 0.27
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 246 NMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDML 365
+MN + V +T ++ QLE++ IRG+ IR+ ILPD L
Sbjct: 5 SMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSL 44
>UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative;
n=1; Theileria parva|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 141
Score = 37.9 bits (84), Expect = 0.27
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGR-VAQLENVYI 323
+P+ +L + E GE Y G L + MN M V T + G +L+ +I
Sbjct: 3 LPLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFI 62
Query: 324 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKS 425
RG+ ++ L LP+ + +++ K KS
Sbjct: 63 RGNTVKSLRLPNEVAEIAKEEKRPRKTRKNHYKS 96
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 37.9 bits (84), Expect = 0.27
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 150 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGR---VAQLENVY 320
P+K L A +V + GE Y G+L +++ MN + T YR+G VA+ V
Sbjct: 8 PLKSLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCT-EYREGTSDPVAKYGRVL 66
Query: 321 IRGSKIRFL 347
IRGS I F+
Sbjct: 67 IRGSNILFI 75
>UniRef50_Q8SSB9 Cluster: U6 snRNA ASSOCIATED SM-LIKE PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U6 snRNA ASSOCIATED
SM-LIKE PROTEIN - Encephalitozoon cuniculi
Length = 88
Score = 36.3 bits (80), Expect = 0.84
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 150 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRG 329
P+ +L + +V E + RG L + + MN + VT+ DG + Y++G
Sbjct: 3 PLTLLRISRNRIVELELKNNDQLRGLLHKCDMAMNLHLKSVTIQKEDGSSIFINECYLKG 62
Query: 330 SKIRFLIL 353
+ IR + L
Sbjct: 63 TSIRLVKL 70
>UniRef50_A5AUJ3 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 394
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 318 YIRGSKIRFLILPDMLKNAPM--FKRQGNKPTAGRGKSA 428
++ GSK+RF+++PDML NAP+ G+ +G G A
Sbjct: 117 HLIGSKVRFMVIPDMLTNAPVGNISSSGSLGLSGSGTGA 155
>UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=3; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Saccharomyces cerevisiae (Baker's yeast)
Length = 187
Score = 35.1 bits (77), Expect = 1.9
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT-------VTYRDG---- 293
+P+ +L A+G + E GE+ +G L ++ MN ++ VT + D
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESS 61
Query: 294 RVAQLENVYIRGSKIRFLILPD 359
+ +L +YIRG+ I+F+ L D
Sbjct: 62 KAVKLNEIYIRGTFIKFIKLQD 83
>UniRef50_Q6BXY3 Cluster: Similar to sp|Q02260 Saccharomyces
cerevisiae YGR074w SMD1 snRNA- associated protein; n=4;
Saccharomycetales|Rep: Similar to sp|Q02260
Saccharomyces cerevisiae YGR074w SMD1 snRNA- associated
protein - Debaryomyces hansenii (Yeast) (Torulaspora
hansenii)
Length = 131
Score = 34.7 bits (76), Expect = 2.6
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 162 LHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIR 341
L A +T E G G+++ MN M + ++ L+ + IRG++IR
Sbjct: 10 LPNATNQPITVELKNGNSINGQILSCSPLMNLSMKNIKLSQPHQDPQLLQFINIRGNQIR 69
Query: 342 FLILPDML 365
++LPD L
Sbjct: 70 QILLPDEL 77
>UniRef50_Q254S4 Cluster: Adherence factor; n=2; Chlamydophila|Rep:
Adherence factor - Chlamydophila felis (strain Fe/C-56)
Length = 3298
Score = 34.3 bits (75), Expect = 3.4
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 391 KGINLLQDEGRVRYCEPKLLVEDEQVEEVGATVEAGK 501
KG++ + DE R+ Y E +L + +++V++ T+E K
Sbjct: 435 KGVDRISDENRIEYLEKELKLSEDEVKQYKETIETNK 471
>UniRef50_A4RU45 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 123
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 177 GHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFL 347
G V E RG L + ++ M+C +T +G +LE V++R IR++
Sbjct: 21 GTTVVIECRDDVALRGHLEQCDEGMHCTLTNAIRVTPEGHKTKLERVFVRARMIRYV 77
>UniRef50_Q6E6A1 Cluster: Small nuclear ribonucleoprotein D3-like
protein; n=1; Antonospora locustae|Rep: Small nuclear
ribonucleoprotein D3-like protein - Antonospora locustae
(Nosema locustae)
Length = 52
Score = 34.3 bits (75), Expect = 3.4
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 249 MNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQG 395
MN + +T RD +++++RGS I F +LP ++ AP + G
Sbjct: 1 MNATLEDTELTRRDKTTQHEKSMFVRGSAINFFVLPPAIRFAPFLLKGG 49
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 34.3 bits (75), Expect = 3.4
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 150 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT-LVTVTYRDGRVAQLENVYIR 326
PI+ L G V + G Y GKL + MN + +T + VAQL V+IR
Sbjct: 3 PIEHLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVFIR 62
Query: 327 GSKIRFLIL 353
GS + F+ L
Sbjct: 63 GSNLLFVSL 71
>UniRef50_UPI00015BACE3 Cluster: Like-Sm ribonucleoprotein, core;
n=1; Ignicoccus hospitalis KIN4/I|Rep: Like-Sm
ribonucleoprotein, core - Ignicoccus hospitalis KIN4/I
Length = 91
Score = 33.9 bits (74), Expect = 4.5
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 150 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT-VTYRDGR-VAQLENVYI 323
P+K L A +VV G Y GKL+ ++ MN + T ++ G VA+ + I
Sbjct: 15 PLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSPETGEPVAKYGRIMI 74
Query: 324 RGSKIRFLIL 353
RGS + F+ L
Sbjct: 75 RGSYVLFISL 84
>UniRef50_Q22HI5 Cluster: EGF-like domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: EGF-like domain
containing protein - Tetrahymena thermophila SB210
Length = 1853
Score = 33.9 bits (74), Expect = 4.5
Identities = 16/71 (22%), Positives = 36/71 (50%)
Frame = +3
Query: 174 EGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLIL 353
+G + C++N GK + ++DN N + + + Y GR + ++ + ++ + L
Sbjct: 1163 QGVQIPCDSNINCSGNGKCLWSQDNYNEILCICNINYA-GRYCEFQSYQLDIARQHLIAL 1221
Query: 354 PDMLKNAPMFK 386
D++ N P+ K
Sbjct: 1222 TDLISNIPLNK 1232
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 33.9 bits (74), Expect = 4.5
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +3
Query: 150 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRG 329
P L E G++VT + N+G +Y+G+L + MN + + + ++RG
Sbjct: 14 PTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRG 73
Query: 330 SKIRFL 347
+ + ++
Sbjct: 74 NNVMYI 79
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 33.9 bits (74), Expect = 4.5
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +3
Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
MS+ + +KVL E+ +V + + RG L+ + +MN + +G L +
Sbjct: 1 MSVDMAVKVLDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAKGLGS 60
Query: 315 VYIRGSKIRFLILPDMLKN 371
+ +RG + +I P +N
Sbjct: 61 IVVRGDNV-VMISPPPAQN 78
>UniRef50_Q9LMW8 Cluster: F5M15.7; n=3; Arabidopsis thaliana|Rep:
F5M15.7 - Arabidopsis thaliana (Mouse-ear cress)
Length = 255
Score = 33.5 bits (73), Expect = 5.9
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 288 DGRVAQLENVYIRGSKIR 341
DG+V+QLE+V+IRGSK+R
Sbjct: 233 DGKVSQLEHVFIRGSKVR 250
>UniRef50_Q01B18 Cluster: Small nuclear riboprotein Sm-D1-like
protein; n=1; Ostreococcus tauri|Rep: Small nuclear
riboprotein Sm-D1-like protein - Ostreococcus tauri
Length = 133
Score = 33.5 bits (73), Expect = 5.9
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +3
Query: 186 VTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDML 365
VT ET + R + + +MN + V +T + +E++ +RG+ IR+ ILPD L
Sbjct: 37 VTDETRSVLCIRARA-GVDVSMNTHLKQVKLTLKGKNPTNVEHLSVRGNTIRYYILPDSL 95
Query: 366 KNAPMFKRQGNKPTAGRGKSA 428
+ K R K+A
Sbjct: 96 NLDTLLVDDTPKQGKPRAKAA 116
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 33.5 bits (73), Expect = 5.9
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 129 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGR---V 299
V I P+K L A +V + G Y G+L +++ MN + T R+G V
Sbjct: 6 VQAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIET-REGTAEPV 64
Query: 300 AQLENVYIRGSKIRFL 347
A+ V IRGS I F+
Sbjct: 65 AKYGRVLIRGSNILFI 80
>UniRef50_Q8IIA8 Cluster: Small nuclear ribonucleoprotein D1,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein D1, putative - Plasmodium falciparum
(isolate 3D7)
Length = 126
Score = 33.1 bits (72), Expect = 7.8
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Frame = +3
Query: 186 VTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQ----------LENVYIRGSK 335
VT E G + G + + MN M V V ++ +A+ LE+V IRG+
Sbjct: 15 VTIELKNGTLITGIITAVDIKMNTHMKNVKVVIKNKNIAEYNVNTKQFLSLEHVTIRGNN 74
Query: 336 IRFLILPDML 365
IR+ IL D L
Sbjct: 75 IRYFILSDSL 84
>UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 178
Score = 33.1 bits (72), Expect = 7.8
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 180 HVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG--RVAQLENVYIRGSKIRFLIL 353
H V E RG L + +N ++ + V D ++ ++N++IRGS +R+++L
Sbjct: 93 HTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYPHLSSVKNIFIRGSVVRYIVL 152
Query: 354 PDMLKNAPMFKRQGNKPTAGRGKSA 428
P + + + + A + A
Sbjct: 153 PQEAVDRGLLEDATRREAASQANKA 177
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,222,947
Number of Sequences: 1657284
Number of extensions: 13387016
Number of successful extensions: 37559
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 35937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37533
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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