Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i01
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 134 6e-32
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 134 7e-32
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 53 2e-07
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 51 1e-06
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 44 1e-04
08_02_0947 + 22897552-22897614,22898291-22898513,22898599-228988... 29 5.4
11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399 28 9.4
>02_01_0022 -
135655-135717,137426-137482,137559-137678,137762-137920
Length = 132
Score = 134 bits (325), Expect = 6e-32
Identities = 56/87 (64%), Positives = 75/87 (86%)
Frame = +3
Query: 129 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 308
++ S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+ +T T +DG+V+QL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQL 60
Query: 309 ENVYIRGSKIRFLILPDMLKNAPMFKR 389
E+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKR 87
>03_02_0318 +
7417361-7417519,7417638-7417690,7417770-7417836,
7417925-7417981,7420005-7420067
Length = 132
Score = 134 bits (324), Expect = 7e-32
Identities = 56/87 (64%), Positives = 75/87 (86%)
Frame = +3
Query: 129 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 308
++ S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+ +T T +DG+V+QL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQL 60
Query: 309 ENVYIRGSKIRFLILPDMLKNAPMFKR 389
E+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKR 87
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L A+GH + E GE Y G L+ + MN + V T +DG + ++ YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 324 RGSKIRFLILPD 359
RG+ I++L +PD
Sbjct: 62 RGNTIKYLRVPD 73
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Frame = +3
Query: 105 SYVFLN*NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTY 284
+Y+ N + + ++ L + VT E G V G + + +MN + V +T
Sbjct: 150 AYILTNRILPWAFYASLRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTL 209
Query: 285 RDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGRGKSAI 431
+ L+++ +RG+ IR+ ILPD L + + + KPTAGR A+
Sbjct: 210 KGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAV 263
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
++ L + VT E G G + + +MN + V +T + +++ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGN 63
Query: 333 KIRFLILPDMLKNAPMF-----KRQGNKPTAGR 416
IR+ ILPD L + + + KPTAG+
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKAKKPTAGK 96
>08_02_0947 +
22897552-22897614,22898291-22898513,22898599-22898892,
22899346-22900598
Length = 610
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -1
Query: 743 GDQNKKTENLEQDLIVTFENIIIIFEQTVVLFPKFVFFSLRYIN 612
G +NK + + QDLI+ ++ + ++F +V P +V+ S+ N
Sbjct: 16 GQKNKDKKGISQDLILAYKTLGVVF-GGLVTSPLYVYPSMNLTN 58
>11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399
Length = 595
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 576 NCQGIISLSFLYIDISK*EKYKFWK*NNCLFKDYYY 683
NC + SF+ +D+ + E Y N LF +YY+
Sbjct: 206 NCSSTVEESFV-LDVKRGESYLLRVINTALFSEYYF 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,033,523
Number of Sequences: 37544
Number of extensions: 339376
Number of successful extensions: 892
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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