Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i01
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)              165   5e-41
SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)                   31   0.77 
SB_21787| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-37)                 29   3.1  
SB_1303| Best HMM Match : RibD_C (HMM E-Value=5.1)                     29   3.1  
SB_29500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_23784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6)                    29   4.1  
SB_43015| Best HMM Match : Catalase-rel (HMM E-Value=3.4)              29   5.5  
SB_27538| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   7.2  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_25313| Best HMM Match : REJ (HMM E-Value=0.012)                     28   7.2  
SB_57040| Best HMM Match : Glyco_hydro_65C (HMM E-Value=1.9)           28   9.5  
SB_31936| Best HMM Match : Glyco_hydro_65C (HMM E-Value=1.1)           28   9.5  
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_6514| Best HMM Match : hATC (HMM E-Value=0.024)                     28   9.5  
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          28   9.5  
SB_57822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_48175| Best HMM Match : hATC (HMM E-Value=0.024)                    28   9.5  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score =  165 bits (400), Expect = 5e-41
 Identities = 81/105 (77%), Positives = 90/105 (85%), Gaps = 5/105 (4%)
 Frame = +3

Query: 135 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 314
           MSIGVPIK+LHEAEGHV+T ET  GEVYRGKLIEAEDNMNCQM+ +TVT RDGRV+QLE 
Sbjct: 1   MSIGVPIKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTARDGRVSQLEQ 60

Query: 315 VYIRGSKIRFLILPDMLKNAPMFKRQGNKPT-----AGRGKSAIL 434
           V++RGSKIRFLILPDMLKNAPMFK+   K +     AGRGKSAIL
Sbjct: 61  VFVRGSKIRFLILPDMLKNAPMFKKMTQKGSSGTGAAGRGKSAIL 105


>SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)
          Length = 114

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +3

Query: 159 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKI 338
           ++   +G+  T E        G +   +  MN +M  V      G V  L  +++ G++I
Sbjct: 16  LIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGEVDNLPAMFVVGTQI 75

Query: 339 RFLILPD 359
           R++ +PD
Sbjct: 76  RYVHIPD 82


>SB_21787| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-37)
          Length = 395

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 737 QNKKTENLEQDLIVTFENIIIIFEQTVVLFPKFVFFSLRYINI 609
           +  + E LE DL+     I+++F   +  FP  +FF L Y N+
Sbjct: 297 EGNQLEELEHDLLRMIYVIVLVF--IICYFPYQLFFILEYFNV 337


>SB_1303| Best HMM Match : RibD_C (HMM E-Value=5.1)
          Length = 229

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F N   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 170 IFPKLLNVVCFSNTLENVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 218


>SB_29500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 556 LYLSYISIVKELFHYHSYILIYLSEKNTNFGNRTTVCSKIIIMFSNVTIRSC 711
           LY  Y   +KELF +   I   LS+  T    RTT+C  +  M   V    C
Sbjct: 81  LYREYDGDIKELFGHAKIIDFGLSKLVTPGERRTTICGTLQYMAPEVLKGEC 132


>SB_23784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F +   N++N ++ P +  F S   R   +    +++W+
Sbjct: 133 IFPKLLNVVCFSHTLDNVENHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 181


>SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6)
          Length = 538

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F +   N++N ++ P +  F S   R   +    +++W+
Sbjct: 281 IFPKLLNVVCFSHTLDNVENHLVIPTLLEFDSVWLRLFRHSYKAKLLWK 329


>SB_43015| Best HMM Match : Catalase-rel (HMM E-Value=3.4)
          Length = 285

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 427 ALFPRPAVGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           A F R A  +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 4   AAFDRIAF-IFPKLLNVMCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 60


>SB_27538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 427 ALFPRPAVGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           A F R A  +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 4   AAFDRIAF-IFPKLLNVMCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 60


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 412 DEGRVRYCEPKLLVEDEQVEEVGATVEAGKVGQDHLDASV 531
           D  R+ + E +L++  + VEE   T+   KVG+D L  S+
Sbjct: 213 DLKRIDHLEHELMISTKTVEEHVITINEMKVGKDQLQDSL 252


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 261  MTLVTVTYRDGRVAQLENVYIRGSKIRFL-ILPDMLKNAPMF 383
            +T V+  Y+  R   L+N+ + GSK RF+ I P+ LK    +
Sbjct: 2665 LTEVSSGYQQPRPINLDNITLTGSKQRFIAIRPNSLKGGSTY 2706


>SB_25313| Best HMM Match : REJ (HMM E-Value=0.012)
          Length = 379

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 261 MTLVTVTYRDGRVAQLENVYIRGSKIRFL-ILPDMLKNAPMF 383
           +T V+  Y+  R   L+N+ + GSK RF+ I P+ LK    +
Sbjct: 36  LTEVSSGYQQPRPINLDNITLTGSKQRFIAIRPNSLKGGSTY 77


>SB_57040| Best HMM Match : Glyco_hydro_65C (HMM E-Value=1.9)
          Length = 269

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 91  IFPKLLNVVCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 139


>SB_31936| Best HMM Match : Glyco_hydro_65C (HMM E-Value=1.1)
          Length = 291

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 18  IFPKLLNVVCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 66


>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 625 IFPKLLNVVCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 673


>SB_6514| Best HMM Match : hATC (HMM E-Value=0.024)
          Length = 620

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 282 IFPKLLNVVCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 330


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 400  LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
            +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 1495 IFPKLLNVVCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 1543


>SB_57822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 91  IFPKLLNVVCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 139


>SB_48175| Best HMM Match : hATC (HMM E-Value=0.024)
          Length = 620

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 400 LFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTRVIWQ 254
           +FP LLN+  F +   N+ N ++ P +  F S   R   +    +++W+
Sbjct: 282 IFPKLLNVVCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWK 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,666,097
Number of Sequences: 59808
Number of extensions: 417067
Number of successful extensions: 1028
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)