Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i01
(767 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3, put... 129 2e-30
At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putati... 129 2e-30
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 55 5e-08
At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, put... 44 8e-05
At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1, put... 41 0.001
At1g20600.1 68414.m02573 DNA-binding protein-related low similar... 33 0.16
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t... 33 0.28
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t... 33 0.28
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 29 2.6
At5g38580.1 68418.m04665 hypothetical protein 29 4.5
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 28 6.0
>At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3,
putative / snRNP core protein D3, putative / Sm protein
D3, putative similar to SWISS-PROT:P43331 small nuclear
ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3)
[Mouse]
Length = 128
Score = 129 bits (312), Expect = 2e-30
Identities = 57/102 (55%), Positives = 80/102 (78%)
Frame = +3
Query: 129 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 308
++ S+G+P+K+LHE+ GH+V+ E +GE+YRG +IE EDN NCQ+ +T T +DG+V+QL
Sbjct: 1 MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
Query: 309 ENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSAIL 434
E+V+IRGS +RFL++PDMLKNAPMF K G+GKSA L
Sbjct: 61 EHVFIRGSLVRFLVIPDMLKNAPMF-----KDVRGKGKSASL 97
>At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
small nuclear ribonucleoprotein Sm D3 (snRNP core
protein D3, Sm-D3) [Mus musculus] SWISS-PROT:P43331
Length = 131
Score = 129 bits (311), Expect = 2e-30
Identities = 52/87 (59%), Positives = 75/87 (86%)
Frame = +3
Query: 129 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 308
++ S+G+P+K+LHEA GH+VT E +GE+YRG +IE EDN NCQ+ +T T +DG+V+QL
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60
Query: 309 ENVYIRGSKIRFLILPDMLKNAPMFKR 389
E+V+IRGSK+RF+++PD+LK+APMFKR
Sbjct: 61 EHVFIRGSKVRFMVIPDILKHAPMFKR 87
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 55.2 bits (127), Expect = 5e-08
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Frame = +3
Query: 147 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 323
+P+ +L A+GH + E GE Y G L+ + MN + V T +DG R ++ YI
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 324 RGSKIRFLILPD-MLKNAPMFKRQGNK--PTAGRGK 422
RG+ I++L +PD ++ K + ++ P GRG+
Sbjct: 62 RGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGR 97
>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to small nuclear ribonucleoprotein
Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen)
[Mouse] SWISS-PROT:P13641
Length = 116
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
++ L + V+ E G + G + + +MN + V +T + L+++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63
Query: 333 KIRFLILPDMLKNAPMF-----KRQGNKPTAGR 416
IR+ ILPD L + + + KPTAG+
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96
>At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to SWISS-PROT:SP|P13641 small
nuclear ribonucleoprotein Sm D1 (snRNP core protein D1,
Sm-D1, Sm-D autoantigen)[Mouse]
Length = 114
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +3
Query: 153 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 332
++ L + V+ E G V G + + +MN + V ++ + L+++ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63
Query: 333 KIRFLILPDML 365
IR+ ILPD L
Sbjct: 64 NIRYYILPDSL 74
>At1g20600.1 68414.m02573 DNA-binding protein-related low similarity
to RAV2 [Arabidopsis thaliana] GI:3868859
Length = 237
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 288 DGRVAQLENVYIRGSKIR 341
DG+V+QLE+V+IRGSK+R
Sbjct: 215 DGKVSQLEHVFIRGSKVR 232
>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 449 WSRTSRWKRWGPPWRLARWVRTISTLALR 535
W +WK W PWRL+ W+RT L+
Sbjct: 995 WIVQFKWK-WQKPWRLSEWIRTSDETLLK 1022
>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 449 WSRTSRWKRWGPPWRLARWVRTISTLALR 535
W +WK W PWRL+ W+RT L+
Sbjct: 995 WIVQFKWK-WQKPWRLSEWIRTSDETLLK 1022
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 150 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVA-QLENVYIR 326
P L G V + N+G YRG L + MN M T Y +G++ + + +IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAME-QTEEYVNGQLKNKYGDAFIR 73
Query: 327 GSKIRFLILPDM 362
G+ + ++ +M
Sbjct: 74 GNNVLYISTVNM 85
>At5g38580.1 68418.m04665 hypothetical protein
Length = 168
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 215 NFTGICFTSHYMTFRLVKYFNRHTDRHVYVLVKKN 111
NF C S T +YF R DR + V + KN
Sbjct: 88 NFVPECLLSSLQTLLWSRYFGRQQDRDIAVYILKN 122
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 449 WSRTSRWKRWGPPWRLARWVR 511
W +WK W PW+L+ W++
Sbjct: 1000 WLLQFKWK-WQKPWKLSEWIK 1019
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,298,359
Number of Sequences: 28952
Number of extensions: 297775
Number of successful extensions: 786
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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