Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h24
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    37   0.003
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   0.91 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   2.8  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   3.7  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   4.9  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   8.5  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   8.5  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   8.5  
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    25   8.5  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    25   8.5  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 190 PWCWYCNREFDDEKILIQHQKAKHFKCHIC 279
           P C +CN  F D+  L +H + KH +C+IC
Sbjct: 245 PKCEFCNTHFYDDDELFKHCREKHERCYIC 274



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 259 HFKCHICHKKLYTGPGLSIHCMQVHK 336
           H KC  C+   Y    L  HC + H+
Sbjct: 244 HPKCEFCNTHFYDDDELFKHCREKHE 269


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 262 NASLSDVG*ESFRRQTPCYNTSTKVWMPSSSSY 164
           N SL +V    F++QTP YN + KV +  SS +
Sbjct: 819 NYSLENVVLNIFKKQTPYYNQADKVHLWQSSRF 851


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 259 HFKCHICHKKLYTGPGLSI 315
           +F C++C   +YTG GL++
Sbjct: 380 YFACYLCSVGVYTGAGLNV 398


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +1

Query: 193 WCWY--CNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIHCMQVH 333
           +C Y  C + F  ++ L +H++     K F C  C++       L+ H  Q+H
Sbjct: 27  YCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 492 WFIIITVRPFAST*FLFLMFFHIFRGYTFHSINFYF 385
           W+ + T   +A T F F+M  + F  Y+ +  NF F
Sbjct: 57  WYRLFTNYLYAGTGFDFIMNIYFFYQYSTYLENFVF 92


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 316 HCMQVHKEAIDKVPNSLPNRSN 381
           H   VHKE++ K+  +L +R+N
Sbjct: 119 HKTDVHKESVSKLSKNLESRNN 140


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 301 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEHE 441
           PG+  + M    +A+D +P +L   S +   I  +  +    VKE++
Sbjct: 443 PGIDQYSMGAFADALDTIPLALAENSGLS-SIEALTAVKARHVKENK 488


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 CWYCNRE-FDDEKILIQHQKAKHFKC 270
           CW+CN+  F +  +L   Q A H  C
Sbjct: 837 CWHCNQPLFSEPFVLFPCQHAFHRSC 862


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 247 QKAKHFK-CHICHKKLYTGPGLSIH-CMQVHKEAIDK 351
           +KA+ ++ C +C+KK Y+    S H   + H++ + K
Sbjct: 64  KKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLSK 100


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 193 WCWYCNREFDDEKILIQHQKAKHFK 267
           +C  C R FD  + L+ H+K K  K
Sbjct: 57  YCIECARYFDSSQALLVHKKGKVHK 81


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 448 FVSHVLSHLQGVYLPFHKFLF 386
           F S VL ++QGV+LP    LF
Sbjct: 299 FFSSVLPYVQGVFLPIKTKLF 319


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 339 FFMYLHAVYGQSRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 214
           FF +  + YGQS++ +     N T K + F + DE   V+ +
Sbjct: 150 FFPFNQSGYGQSKAAL-----NFTMKEISFELQDEGFIVISI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,416
Number of Sequences: 5004
Number of extensions: 44256
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)