Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h24
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 146 1e-35
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 37 0.012
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 36 0.027
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 31 0.44
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 29 1.8
At2g24030.2 68415.m02870 expressed protein and genefinder 29 3.1
At2g24030.1 68415.m02871 expressed protein and genefinder 29 3.1
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ... 28 4.1
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 28 5.5
At5g28720.1 68418.m03528 hypothetical protein 28 5.5
At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co... 28 5.5
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 28 5.5
At1g71760.1 68414.m08294 hypothetical protein 27 7.2
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 27 7.2
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 27 7.2
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 27 7.2
At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ... 27 9.6
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 27 9.6
At3g06640.1 68416.m00772 protein kinase family protein contains ... 27 9.6
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote... 27 9.6
At2g32920.1 68415.m04036 thioredoxin family protein similar to S... 27 9.6
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 146 bits (353), Expect = 1e-35
Identities = 61/94 (64%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Frame = +1
Query: 160 MGRKKKKAS-KPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHK 336
MG+KKK+A+ K WC+YC+REFDDEKIL+QHQKAKHFKCH+CHKKL T G+ IH +QVHK
Sbjct: 1 MGKKKKRATEKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMVIHVLQVHK 60
Query: 337 EAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 438
E + KVPN+ R + +IEIYGM+GIPP + H
Sbjct: 61 ENVTKVPNAKDGRDSTDIEIYGMQGIPPHVLTAH 94
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 36.7 bits (81), Expect = 0.012
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 190 PWCWYCNREFDDEKILIQHQKAKHFKCHICHK 285
P C +C R F + L H +H+ CHIC +
Sbjct: 198 PMCEFCKRPFYGDNELYTHMSREHYTCHICQR 229
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 35.5 bits (78), Expect = 0.027
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 181 ASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHK 285
A P C +C F + L H +H+ CH+C +
Sbjct: 195 AGHPMCEFCRNPFYGDNELYTHMSTEHYTCHLCQR 229
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 196 CWYCNREFDDEKILIQHQKAKHF 264
C YC + F+DEK L +H +H+
Sbjct: 107 CGYCKKSFNDEKFLDKHFSTRHY 129
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 214 EFDDEKILIQHQKAKHF-KCHICHKKLYTGPGLSIHCMQVHKEAIDKVPN 360
E D K L K HF KC IC + TG L H M+ H+ ++ P+
Sbjct: 77 EQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGH-MRRHRSSMTVEPS 125
>At2g24030.2 68415.m02870 expressed protein and genefinder
Length = 374
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 163 GRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHI--CHKKLYTGPGLSIHCMQVHK 336
G KKKK + WC CN + + E+ + H K + KL T P S++ K
Sbjct: 296 GEKKKKETV-WCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQNKLITVPVRSLNADPGQK 354
Query: 337 EAI 345
E++
Sbjct: 355 ESV 357
>At2g24030.1 68415.m02871 expressed protein and genefinder
Length = 455
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 163 GRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHI--CHKKLYTGPGLSIHCMQVHK 336
G KKKK + WC CN + + E+ + H K + KL T P S++ K
Sbjct: 377 GEKKKKETV-WCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQNKLITVPVRSLNADPGQK 435
Query: 337 EAI 345
E++
Sbjct: 436 ESV 438
>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 272
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 196 CWYCNREFDDEKILIQHQKAKHFK-CHICHKKLYTGPGLSIHC 321
C +C + F +EK L +H ++H+ + H K + ++HC
Sbjct: 109 CGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHC 151
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +1
Query: 202 YCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLPNRSN 381
+ ++ DD + L + K H+ L G+ I + ++ I S N
Sbjct: 123 FAGKQLDDGRTLADYNIQKESTLHLV---LRLRGGMQIFVRTLTRKTIALEVESSDTTDN 179
Query: 382 IEIEIYGMEGIPPE 423
++ +I EGIPP+
Sbjct: 180 VKAKIQDKEGIPPD 193
>At5g28720.1 68418.m03528 hypothetical protein
Length = 142
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 355 PNSLPNRSNIEIEIYGMEGIPPEDVKEH 438
P++L + ++E E Y +G+P +D++EH
Sbjct: 87 PHTLGVQLDLEQEPYDDDGVPADDIEEH 114
>At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A)
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA putative histone deacetylase (HD2A)
GI:11066134
Length = 245
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 175 KKASKPWCWYCNREFDDEKILIQHQKAKH 261
K AS+ C C + F+ L H KAKH
Sbjct: 213 KSASQVSCGSCKKTFNSGNALESHNKAKH 241
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 259 HFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSL 366
HF CH+C K L +H M H K P SL
Sbjct: 144 HFSCHVCFKTFNRYNNLQMH-MWGHGSQYRKGPESL 178
>At1g71760.1 68414.m08294 hypothetical protein
Length = 259
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 166 RKKKKASKPWCWYCNREFDDEKILIQHQKAKHFK 267
+KKK ++K C CN++ +K+ Q KAK +
Sbjct: 21 QKKKSSNKWVCVICNQKQSVKKVFAQGYKAKELR 54
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 256 KHFKCHICHKKLYTGPGLSIHCMQVHKEAI 345
K KC ICH++ TG L H ++H E +
Sbjct: 796 KIHKCSICHREFSTGQSLGGH-KRLHYEGV 824
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 301 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 438
PG+ + ++ EA+D VP +L S ++ I + + + +KE+
Sbjct: 361 PGVEQYAIRAFAEALDSVPMALAENSGLQ-PIETLSAVKSQQIKEN 405
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 301 PGLSIHCMQVHKEAIDKVPNSLPNRSNIEIEIYGMEGIPPEDVKEH 438
PG+ + ++ EA+D VP +L S ++ I + + + +KE+
Sbjct: 437 PGVEQYAIRAFAEALDSVPMALAENSGLQ-PIETLSAVKSQQIKEN 481
>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 191
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 250 KAKHFKCHICHKKLYTGPGLSIHCMQVHK 336
K K FKCH C + T L H HK
Sbjct: 51 KEKRFKCHYCFRNFPTSQALGGH-QNAHK 78
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +1
Query: 196 CWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTG-----PGLSIHCMQVHKEAIDKVPN 360
C C REF+D+ Q QK + + C +C+ + P L + + H+ + +P
Sbjct: 204 CLLCGREFEDQ----QGQKYELYHCDVCNFSICISCQGNPPPLVVVTPKTHEHQLHLIPR 259
Query: 361 SL 366
L
Sbjct: 260 LL 261
>At3g06640.1 68416.m00772 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 763
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +2
Query: 446 KNQVEAKGLTVMMMNQLPRKKLLQHCWVQALLQCHLGYCPHPWGQCHQE 592
K +E + +M ++ R K+ ++ +QC + P PW H++
Sbjct: 17 KKMIELEKSQEHLMQEMSRLKVSTELRKESRIQCSMNLRPSPWKFTHKQ 65
>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profile: Eukaryotic
protein kinase domain
Length = 985
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 599 GYIPGGTGPMGVGNIPGDTVEGPAPSNAGV 510
G IP G V N+ + + GP PS G+
Sbjct: 555 GPIPSGFATFAVFNVSSNNLSGPVPSTNGL 584
>At2g32920.1 68415.m04036 thioredoxin family protein similar to
SP|Q15084 Protein disulfide isomerase A6 precursor (EC
5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085:
Thioredoxin
Length = 440
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 345 YGFFMYLHAVYGQSRSCVQLFVTNVTFKML 256
+GFF A+YG S VQL +N K+L
Sbjct: 16 FGFFDLSSALYGSSSPVVQLTASNFKSKVL 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,044,847
Number of Sequences: 28952
Number of extensions: 229225
Number of successful extensions: 796
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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