Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h23
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 32 0.074
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 31 0.17
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 30 0.23
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 30 0.30
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 28 0.91
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 28 1.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.7
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 6.4
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 6.4
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 8.5
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 31.9 bits (69), Expect = 0.074
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 486 NERGETPLHVASIRGDHDQVKKLIDQGQDPDVPDFAGWT 602
+E G TP+H A G D +K L+++G D ++ D G T
Sbjct: 34 DENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGET 72
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 465 KRTRQQRNERGETPLHVASIRGDHDQVKKLIDQGQDPDV 581
K +NE G T +H A++ G + K L++ G DP +
Sbjct: 61 KEVINAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHI 99
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 495 GETPLHVASIRGDHDQVKKLIDQGQDP 575
G+T LHVA+ D + VK L+D G DP
Sbjct: 189 GQTYLHVATKAKDAELVKWLLDNGADP 215
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 480 QRNERGETPLHVASIRGDHDQVKKLIDQGQDPDVPDFAG 596
+R+ G TPLH AS+ D L+ G PDV +G
Sbjct: 890 KRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASG 928
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 477 QQRNERGETPLHVASIRGDHDQVKKLIDQGQDPDVPDFAGWT 602
++++ +G+TPLH A+ G VK LI Q + D G+T
Sbjct: 135 RKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFT 176
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 501 TPLHVASIRGDHDQVKKLIDQGQDPDVPDFAGWT 602
TPL +AS G + V L+ G D D +GWT
Sbjct: 403 TPLMLASATGLSEIVSILVASGASVDEVDSSGWT 436
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 445 RLQQKKESVQDNNATSVAKHLFMSHLLEETMIK 543
RLQQK E V + ++ H + SHL+ M K
Sbjct: 684 RLQQKVEWVDNGKQDTIFFHHYTSHLVNTIMRK 716
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 504 PLHVASIRGDHDQVKKLIDQGQDPDVPDFAGW 599
P+H A+ RG V L+ G DP + D G+
Sbjct: 71 PIHWAAKRGSVKTVHYLVQHGADPLLKDKQGF 102
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 366 LESEASRQTHGRSPSFATSTAWSG 295
LE + + Q PS STAW+G
Sbjct: 397 LEGQLNAQARSSDPSSTISTAWTG 420
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 165 LNKLRASIHF*KSQTRKINTFDTEL*LTIETK*NLRKSVNKV 40
+N L I ++ ++IN TEL L++E K +K KV
Sbjct: 343 INDLDHQISVMQNDEKRINNAKTELSLSLEKKLEAKKQKEKV 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,661
Number of Sequences: 5004
Number of extensions: 34893
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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