Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h23
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.3  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 294 HNHTAKREITLTTP*NNKTSSTLD 223
           H+ TAK+   L+ P NN  ++  D
Sbjct: 187 HDETAKKPRVLSPPLNNNDATPTD 210


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 436 QPLRLQQKKESVQDNN 483
           QPL L  K ++ QDNN
Sbjct: 511 QPLDLSAKPKNSQDNN 526


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 530 SSNRCDMKRCFATLVALLSCTLSFFCWS 447
           S N+     C    VAL++ +L F  W+
Sbjct: 265 SENQNTSAECKLAKVALMTISLWFMAWT 292


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 39  NNHYPNEGSSYNT 1
           NN+Y N  ++YNT
Sbjct: 95  NNNYNNYNNNYNT 107


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 177 SYSCRTSCVKY*RVS 221
           SY+CR  C  Y +VS
Sbjct: 50  SYACRGRCSSYLQVS 64


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 152 ELQYIFKSHKHVKLTHLTQN 93
           EL+ I +  KH+   H T+N
Sbjct: 213 ELRIILEDIKHINTRHNTKN 232


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 530 SSNRCDMKRCFATLVALLSCTLSFFCWS 447
           S N+     C    VAL++ +L F  W+
Sbjct: 15  SENQNTSAECKLAKVALMTISLWFMAWT 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,357
Number of Sequences: 438
Number of extensions: 2660
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)