Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h22
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45686| Best HMM Match : T-box (HMM E-Value=0) 110 9e-25
SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5) 31 0.70
SB_49871| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) 31 0.93
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15) 28 4.9
SB_19391| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 27 8.6
SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
Length = 947
Score = 110 bits (264), Expect = 9e-25
Identities = 59/130 (45%), Positives = 81/130 (62%)
Frame = +1
Query: 205 IDEPTRPAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLE 384
+ EP + + + H + +++ P K+ VA IRG++V EA+KQ+ F KK A VKE + E
Sbjct: 74 VPEPEKQS-IHHCRRSVRSGPRKMNLVARQIRGLSVTEAIKQMEFSPKKAATTVKEVLQE 132
Query: 385 AQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEVRYKYSHYFVRLEEGKP 564
AQ A +++ +E K NLWVAES+ GKG FK +R HARGR G YSHYF+ L EG P
Sbjct: 133 AQNTAQRNYGIEDKENLWVAESYVGKGKYFKKLRYHARGRFGIEHVHYSHYFLVLREG-P 191
Query: 565 PTDYYKRKPL 594
KR+ L
Sbjct: 192 LLGKNKRRRL 201
>SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5)
Length = 336
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 98 INVTIFTPIRYI*HGQRRLHQNLLFKITRKFILHNKLMN 214
+ T+ +R I +R+ HQ L F I ++ LH K++N
Sbjct: 11 VTSTVLPSVRRIGRNERKTHQILSFSIETEYDLHKKVVN 49
>SB_49871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 98 INVTIFTPIRYI*HGQRRLHQNLLFKITRKFILHNKLMN 214
+ T+ +R I +R+ HQ L F I ++ LH K++N
Sbjct: 11 VTSTVLPSVRRIGRNERKTHQILSFSIETEYDLHKKVVN 49
>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
Length = 450
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +1
Query: 34 NNNICNMFNPFKNIFVSNLKYNQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQ 204
NN+ CN N N N N CNN + T AT P + Q ++ P QQ
Sbjct: 48 NNSNCNNINNCNNSNNCN-NNNNCNNTTAATTATTTTAATTPTTLPQQLSQMTPQQQ 103
>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1312
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 223 PAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLE-AQEMA 399
P H+K K PD LW+V + ++ D ++ + N K L +K E
Sbjct: 269 PGIPMHKKNYYKTKPDLLWFVG--VDKLSRDYVTQEKNDPNVKICLSMKNNETSIVSEQG 326
Query: 400 IKDHNVEFKSNLWVAES 450
+K ++ + +LW A+S
Sbjct: 327 VK-YDFVYDQSLWSADS 342
>SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 181 KKIYPPQQIDEPTRPAFVCHQKTNIKYSP 267
KK +QID+ ++ ++CH++ + KY+P
Sbjct: 653 KKTKIIKQIDDSSKLRYICHRRIHPKYTP 681
>SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 4 SISNRHP*PKNNNICNMFNPFKNIFVSNLKYNQCNNFHTNSLH 132
SI+NR+ NN+I N N N ++N N NN + NS++
Sbjct: 68 SINNRNN-TNNNSINNRNNNNNNNSINNCNNNSINNRNNNSIN 109
>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
Length = 510
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 400 IKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEV-RYKYSHYFVRLEEGKPPTDY 576
IK ++S+ A ++ + +R HAR +LGE K HY + L+EG P Y
Sbjct: 378 IKKEITRYQSDPGQATAYMVGQLNLMRLREHARQQLGEAFNLKDFHYHL-LKEGSAPLSY 436
>SB_19391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +1
Query: 346 KKGALFVKEAVLEAQEMA-IKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEVRY 522
KK A + V E MA + D N + N W E + + R RGR GEV
Sbjct: 188 KKTATALSVEVSEEPSMAKVIDINRYSELNRWRKEYLAN----LREFHRSKRGRQGEVTV 243
Query: 523 KYSHYFVRLEEGKPPTDY 576
+ EEGK +Y
Sbjct: 244 EVGEGVTVYEEGKKKNEY 261
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 187 FSCYFE*KILVQSPLSMLDVTNWCENCY 104
FSCYF + L + S+ D +C CY
Sbjct: 487 FSCYFCHRSLASAAFSVRDGCRYCMECY 514
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 187 FSCYFE*KILVQSPLSMLDVTNWCENCY 104
FSCYF + L + S+ D +C CY
Sbjct: 75 FSCYFCHRSLASAAFSVRDGCRYCMECY 102
>SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -1
Query: 589 VYVYNNQ*XACPLQVSQSSDYTYSAPHPICLV 494
VY Y +CP+ + +Y Y+ CLV
Sbjct: 248 VYAYTQAQASCPVSTIRQGEYAYTQAQASCLV 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,328,200
Number of Sequences: 59808
Number of extensions: 384261
Number of successful extensions: 867
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -