Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h22
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-4|CAA21022.1|  260|Caenorhabditis elegans Hypothetical ...    99   2e-21
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z82057-5|CAB04861.3|  325|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81142-11|CAB03512.3|  325|Caenorhabditis elegans Hypothetical p...    28   4.4  
AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    28   4.4  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    27   7.6  
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical...    27   7.6  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    27   7.6  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    27   7.6  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    27   7.6  

>AL031633-4|CAA21022.1|  260|Caenorhabditis elegans Hypothetical
           protein Y39A1A.6 protein.
          Length = 260

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
 Frame = +1

Query: 157 PKSFIQNNKKIYPPQQIDEPT---RPAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALK 327
           P+ +   NK ++PP  I   T   +P  V H K ++ +SP ++W    L+  M VDEA+ 
Sbjct: 90  PEKWEYYNKVVWPPNYIVPETGLPKPKEVFHCKESVHFSPKRMWAACQLVWKMNVDEAIT 149

Query: 328 QLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRL 507
           QL     K    + + + +A+  A  + ++E+ S ++VA++F  +  + KG RRHA    
Sbjct: 150 QLDMQQLKACNLLMDTIKKAKSRAADEFHIEYPSQMYVADAFPVQSNIVKGARRHAHDNW 209

Query: 508 GEVRYKYSHYFVRLEEGKPP 567
             +RY+Y H FVRLEEG  P
Sbjct: 210 NTIRYRYIHIFVRLEEGPAP 229


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 297 YETGYIPKLIWAVFNISFLMTHKCWSSWFINLLWRI 190
           Y+  Y P   W V ++ F+      + WF+  +WR+
Sbjct: 28  YDHHYYPMWFWIVISVGFVFCTLSCAVWFMCAMWRL 63


>Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical
           protein C06B3.2 protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 318 FINSHSSYETGYIPKLIWAVFNISFLMTHKCWSSWFINLLWRINF 184
           FI  ++ Y       L  ++FN + L    C +SW+ NL++  NF
Sbjct: 369 FIGFYAVYALYIQGPLAASLFNFTVLQVEACKASWWRNLIYINNF 413


>Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical
           protein T27A8.5 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 167 LFKITRKFILHNKLMNQLDQHLCVIKKLILNT 262
           L  +  K   ++K   Q D H+C   K ILNT
Sbjct: 357 LAMVANKMFTNSKSSGQFDTHMCAALKYILNT 388


>Z82057-5|CAB04861.3|  325|Caenorhabditis elegans Hypothetical
           protein ZK1037.11 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 259 YSPDKLWYVACLIRGMTVDEALKQLSFV 342
           Y P+K WYVAC +        L Q+S++
Sbjct: 250 YYPEKFWYVACKVWDCYFTAVLIQVSYL 277


>Z81142-11|CAB03512.3|  325|Caenorhabditis elegans Hypothetical
           protein ZK1037.11 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 259 YSPDKLWYVACLIRGMTVDEALKQLSFV 342
           Y P+K WYVAC +        L Q+S++
Sbjct: 250 YYPEKFWYVACKVWDCYFTAVLIQVSYL 277


>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 253 Y*FFDDTQMLVELVHQFVVEDKFSCYFE*KILVQSPLSMLDVTNWCENC-YIDCTSNWRR 77
           Y FF    ++V L+  F++        E K+ ++      +   WC+NC + +  SN  R
Sbjct: 138 YAFF--ISLIVVLIFTFLIYPDLKYQKEYKLKMEQRFGQFETYMWCDNCFFFNFDSNLFR 195

Query: 76  KYF 68
            +F
Sbjct: 196 WFF 198


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 97  NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 225
           +Q N+ +++ +H   T    P   +QN  K  PPQ  D+ T P
Sbjct: 41  HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 82


>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
            protein Y75B8A.24 protein.
          Length = 2121

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 76   FVSNLKYNQCNNFHTNSLHLAWT--KATAPKSFIQNNKKIYPPQQIDEPTRPAFVCH 240
            F S  KY +      +   L WT   A AP+ F++  +K+   +  DEPT  A V H
Sbjct: 891  FSSFFKYIEDKTMRKDKSGL-WTCMLAAAPRIFLEWCEKMMKRRDNDEPTEEALVWH 946


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 97  NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 225
           +Q N+ +++ +H   T    P   +QN  K  PPQ  D+ T P
Sbjct: 38  HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 79


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 97  NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 225
           +Q N+ +++ +H   T    P   +QN  K  PPQ  D+ T P
Sbjct: 47  HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 88


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 97  NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 225
           +Q N+ +++ +H   T    P   +QN  K  PPQ  D+ T P
Sbjct: 40  HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,645
Number of Sequences: 27780
Number of extensions: 305053
Number of successful extensions: 723
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)