Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h22
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.7  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 176 ITRKFILHNKLMNQLDQHLCVIKKLILNTAQISFGM 283
           IT  + +    +NQ D +  +    I+ T Q  FGM
Sbjct: 15  ITETYFVSAYNLNQEDSNWIITNSFIIFTMQTGFGM 50


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 31  KNNNICNMFNPFKNIFVSNLKYNQCNNFHTNSLH 132
           K   I +  NP  N +  N  YN  N  + N L+
Sbjct: 77  KEPKIISNNNPLSNNYNYNNNYNNYNKHNYNKLY 110


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   NRSQIAIPNLKIITF 46
           N+ +I  PNLKI +F
Sbjct: 440 NKDEIIYPNLKIESF 454


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   NRSQIAIPNLKIITF 46
           N+ +I  PNLKI +F
Sbjct: 440 NKDEIIYPNLKIESF 454


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 142 TKATAPKSFIQNNKKIYPPQQIDE 213
           T  T P +  QN     PP Q+DE
Sbjct: 673 TTTTTPNT-TQNASATTPPPQVDE 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,483
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)