Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h22
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28360.1 68417.m04059 ribosomal protein L22 family  protein         64   7e-11
At1g52370.1 68414.m05910 ribosomal protein L22 family  protein s...    63   2e-10
At2g22610.1 68415.m02680 kinesin motor protein-related                 29   3.1  
At3g45800.1 68416.m04957 hypothetical protein                          28   4.1  
At3g06550.1 68416.m00761 O-acetyltransferase-related similar to ...    28   4.1  
At2g33060.1 68415.m04054 leucine-rich repeat family protein cont...    28   4.1  
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ...    27   9.4  
At1g29890.1 68414.m03653 acetyltransferase-related low similarit...    27   9.4  

>At4g28360.1 68417.m04059 ribosomal protein L22 family  protein
          Length = 271

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 39/105 (37%), Positives = 56/105 (53%)
 Frame = +1

Query: 250 NIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKS 429
           +IK SP K+  VA L+RGM V++AL QL    K+ A  V   +  A+  A  +H ++   
Sbjct: 113 SIKQSPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLD-PD 171

Query: 430 NLWVAESFSGKGMVFKGIRRHARGRLGEVRYKYSHYFVRLEEGKP 564
            L VAE+F GKG+  K +  HA+GR G +        V + E  P
Sbjct: 172 RLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTP 216


>At1g52370.1 68414.m05910 ribosomal protein L22 family  protein
           similar to GB:Z67753 from [Odontella sinensis]
          Length = 269

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 35/87 (40%), Positives = 51/87 (58%)
 Frame = +1

Query: 250 NIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKS 429
           +IK SP K+  VA L+RGM V++AL QL    K+ +  V   +  A+  A  +H ++   
Sbjct: 112 SIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLD-PD 170

Query: 430 NLWVAESFSGKGMVFKGIRRHARGRLG 510
            L VAE+F GKG+  K +  HA+GR G
Sbjct: 171 RLLVAEAFVGKGLFGKKVAYHAKGRSG 197


>At2g22610.1 68415.m02680 kinesin motor protein-related 
          Length = 1093

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +1

Query: 118 TNSLHLAWTKATAP-----KSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDK 273
           TN  H AW   T+      K  ++ N KIY  + +D+       C +    KY  DK
Sbjct: 292 TNECHEAWMSLTSANEQLEKVMMELNNKIYQARSLDQTVITQADCLKSITRKYENDK 348


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 193 PPQQIDEPTRPAFVCHQKTNIKYSPDKLWYV--ACLIRGMTVDEALKQL 333
           P + +DEP+R  ++C    N+  + DK+  +   C+ + M+++E +  L
Sbjct: 98  PSKAMDEPSRHNYLCSISHNVSETIDKVKNLIETCIYKYMSLEETVTYL 146


>At3g06550.1 68416.m00761 O-acetyltransferase-related similar to
           O-acetyltransferase (GI:17063556) [Cryptococcus
           neoformans var. neoformans]; contains 7 transmembrane
           domains
          Length = 419

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -2

Query: 255 NISFLMTHKCWS-SWFINLLWRINFLVI-----LNKRFWCSRLCP 139
           N S+    K +S + F  ++WR+NFLVI     LN  +    +CP
Sbjct: 219 NFSYYYIRKDFSLARFAQMMWRLNFLVIFSCIVLNNSYMLYYICP 263


>At2g33060.1 68415.m04054 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 808

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 16  RHP*PKNNNICNMFNPFKNIFVSNLKYNQCNNFHTNSLHLAWTKATAP 159
           R P PK     N+ + + N F  N+    CN      L L++   T P
Sbjct: 377 RGPFPKPPLSINLLSAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGP 424


>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 681

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 511 EVRYKYSHYFVRLEEGKPPTD 573
           +VRYK+  +F+R+ +GK  +D
Sbjct: 521 KVRYKHDSHFLRIRDGKKASD 541


>At1g29890.1 68414.m03653 acetyltransferase-related low similarity
           to O-acetyltransferase [Cryptococcus neoformans var.
           neoformans] GI:17063556
          Length = 470

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -2

Query: 318 FINSHSSYETGYIPKLIWAVFNISFLMTHKCWS-SWFINLLWRINFLV-----ILNKRFW 157
           F N+   +  GY+   +    N S+    K +S + F  ++WR+NF V     ILN  + 
Sbjct: 128 FYNAIRVFIAGYV--WMTGFGNFSYYYIRKDFSLARFTQMMWRLNFFVAFCCIILNNDYM 185

Query: 156 CSRLCP 139
              +CP
Sbjct: 186 LYYICP 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,938,666
Number of Sequences: 28952
Number of extensions: 273650
Number of successful extensions: 663
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)