Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h19
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    40   3e-05
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = +1

Query: 394 RLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHNRISDLEELFRFETRPYKLNKLVLANN 573
           +LQ+L+L  N I  IAG     L  L T + S+N +  L E     TR   L ++ LA N
Sbjct: 238 QLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTR--DLREIHLAYN 295

Query: 574 NIEELPQDAF 603
            + +LP+  F
Sbjct: 296 GLRDLPKGIF 305



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
 Frame = +1

Query: 271 KNVAEDYYPGDPETRLLGFITSLKITGQ-MPKTNLTLLQYTYRLQDLNLTNNQIERIAGS 447
           +N   ++Y G    R L  +T L++ G  +   +  +L     LQ LNL  N+++ +   
Sbjct: 463 ENRISNFYNGS--FRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERY 520

Query: 448 PFYYLGKLETIDLSHNRISDLEELFRFETRPYKLNKLVLANNNIE 582
            F    +LE I L  N +SD+  +F   T    L  L L+ N+IE
Sbjct: 521 AFERNMRLEAIRLDGNFLSDINGVF---TSIASLLLLNLSENHIE 562



 Score = 29.5 bits (63), Expect = 0.030
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +1

Query: 397 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHNRISDLEELFRFETRPYKLNKLVLANNN 576
           L+ L++  N IE +         K++T+D SHNRI++L  L    + P  +  L + NN 
Sbjct: 573 LKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPL----SVPDSVELLFINNNY 628

Query: 577 IEELPQDAF 603
           I  +  + F
Sbjct: 629 INLVRPNTF 637



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 394 RLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHNRISDLEELFRFETRPYKLNKLVLANN 573
           RL  LNL+ N +  I    F  L  L+ +DL +N I  +E         Y L+ L L++N
Sbjct: 336 RLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPL--YNLHTLELSDN 393

Query: 574 NIEELPQDAF 603
            +  +    F
Sbjct: 394 KLRTVGAQLF 403



 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 397 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHNRISD 507
           L++L+L+ N++  +  +    L  L+T+DL  NRIS+
Sbjct: 433 LKELDLSGNELTSVPDA-LRDLALLKTLDLGENRISN 468



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 108 QENQKLITFRHLSTVRSERNSV*E 37
           QEN  L+  R L  +  +RN++ E
Sbjct: 228 QENSPLLDLRQLQELHLQRNAIVE 251


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 491 ITGLAIWKNYFVLKRDHTNST 553
           + G  I K Y++ KR+H +S+
Sbjct: 584 VKGKGIMKTYWLEKREHRSSS 604


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 295 PGDPETRLLGFITSLKITGQMPKTNLTLLQ 384
           PG  +     F+T   I GQ    N+  LQ
Sbjct: 671 PGSADKARNDFLTEASIMGQFEHPNVIFLQ 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,580
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)