Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h18
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 31 0.12
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 28 1.1
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 1.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 3.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 4.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 4.4
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 5.8
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 350 LILEPEIFQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKENVTIDNV 529
LIL P I ++ +Y T+N D S+ + +LL ++YL K Y ++ ID+
Sbjct: 844 LILPPSIVDMVKSYFVTNNPD-KSLLEIQNLLNTLQRYLTNPALKNVTLYQDWDIVIDDS 902
Query: 530 IEV 538
+V
Sbjct: 903 ADV 905
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 239 SCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLILEPEIFQLILNYIYTDNVDIT 418
S N SL D LL S+ C F V K A ILE +I + +L + D +D+
Sbjct: 1183 SANENLSLLDAQAALLRSWSIFICAF-VEFVKEDATLSILELKIMKWVLKSLAEDTIDVN 1241
Query: 419 SIEQ 430
+++
Sbjct: 1242 VVQE 1245
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +2
Query: 329 KKFKAHKLILEPEIFQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKE 508
K K + LE +IFQ LN+I T N ++ S+ D + Y+L+ + + +KE
Sbjct: 48 KDTKQRNVSLE-DIFQDFLNFIITKNQEMFSM----DCNSICKSYVLKVAEEKIEKLLKE 102
Query: 509 NVTIDN 526
N T+ N
Sbjct: 103 NGTLKN 108
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 345 CALNFFPETQKLQSLHS*DTNSFLMRSYKLARLL 244
C + +FP+ S HS D +F R Y L R L
Sbjct: 21 CFVKYFPKCSVQSSFHSYDELAFSRRLYNLPRTL 54
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 3.3
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 25/115 (21%)
Frame = +2
Query: 317 CVSGKKFKAHKLILEP--EIFQLILNYIYTD---NV------DITSIEQAFDLLYASRKY 463
C K ++ KL+L ++FQ+ LN+ Y N+ +ITS E +D + K
Sbjct: 640 CSVVPKTESQKLLLNEMGKLFQVELNFSYDSPDVNLLIEQFYEITSYESNYDDAFVEYKD 699
Query: 464 LLEHLTKTCIEYIKENVTIDN-------------VIEV-LNYPDYMHDKQLTTYA 586
K IE++ N+T+ + V+++ LN+P Y D TT++
Sbjct: 700 ATVANRKDFIEFLFHNITVSSKHTAVIFTSDLLMVLKIALNHPPYFDDLATTTFS 754
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 389 YIYTDNVDITSIEQAFDLLYASRKY 463
Y+ +VD+T I ++LLY S Y
Sbjct: 1449 YLQRQHVDVTDIPMYYELLYPSTDY 1473
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 443 LYASRKYLLEHLTKTCIEYIKENVTIDNVIEVLNYPDYMHDKQLTTYAVN 592
++ +KY + K+C + IK+++ V + L P+++ K T +A +
Sbjct: 579 MFGRKKYFVRIDIKSCYDRIKQDLMFRIVKKKLKDPEFVIRKYATIHATS 628
>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +2
Query: 188 LGSWIIKFKMGYLKNENSCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLILEPE 367
+GS + FK G + +EN+ N +R + +CN C S +K K++++++
Sbjct: 1 MGSCLRFFKQGAILHENNTN----FTERSSSVFF-----ECNPCYSIEKLKSNRILIAVR 51
Query: 368 IFQLILNYIYT 400
+F + T
Sbjct: 52 LFSFAFSSFST 62
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 224 LKNENSCNNRASLYDRIKKLLVSYEWSDCNFC 319
+K EN CNN + L++ I++ +S N C
Sbjct: 1048 IKQENLCNNGSLLFEAIEQNSLSKVMIPLNIC 1079
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,240
Number of Sequences: 5004
Number of extensions: 54778
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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