BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11h11 (257 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 0.68 06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 26 3.6 07_03_0473 - 18525712-18525858,18526049-18526162,18526442-185265... 25 8.4 07_01_1123 - 10385215-10385574,10385676-10385810,10386385-103870... 25 8.4 >11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 Length = 1135 Score = 28.7 bits (61), Expect = 0.68 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -3 Query: 159 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 79 N M PCKK +KGM++ P FF SK Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684 >06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081, 8733557-8733630,8733706-8733786,8734902-8735079, 8735336-8735506,8736113-8736202,8736284-8736331, 8736447-8736562,8736655-8736733,8737101-8737223 Length = 413 Score = 26.2 bits (55), Expect = 3.6 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +3 Query: 3 QGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKA 134 QGQ V A + H IL + K A NSFL + KA Sbjct: 34 QGQNVYPADQQMLIHQGKILKDDTTLEGNKVAENSFLVIMLSKA 77 >07_03_0473 - 18525712-18525858,18526049-18526162,18526442-18526522, 18526787-18526865,18526902-18526996,18527092-18527170, 18527339-18527450,18527682-18527770,18527868-18527938, 18528846-18528962 Length = 327 Score = 25.0 bits (52), Expect = 8.4 Identities = 8/27 (29%), Positives = 17/27 (62%) Frame = +3 Query: 108 FLFYIFYKACNVTLFYNLYKVIHNISE 188 F F +F K CN+ ++Y + + N+++ Sbjct: 175 FDFMVFTKQCNLIIYYAMIEQYDNLAQ 201 >07_01_1123 - 10385215-10385574,10385676-10385810,10386385-10387091, 10387158-10387455 Length = 499 Score = 25.0 bits (52), Expect = 8.4 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +3 Query: 45 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCYDC 206 +T I PK + EKRA+ + F+ K C + K +H++S + ++C Sbjct: 446 NTYVIAEQPKLLEFEKRASKTAHFHFRSKKCYYDWVH--IKDVHDLSLSDPFEC 497 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,445,142 Number of Sequences: 37544 Number of extensions: 81348 Number of successful extensions: 148 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 148 length of database: 14,793,348 effective HSP length: 64 effective length of database: 12,390,532 effective search space used: 260201172 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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