Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h11
         (257 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.45 
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   27   1.8  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             27   2.4  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   3.2  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.2  
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_54688| Best HMM Match : DUF963 (HMM E-Value=0.017)                  25   7.4  

>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 189 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 49
           +QI+Y+  Y   KI +H++  K  RK + L  FFPS  H +    +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 27  VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 188
           V++ +    A++  P  V K+KR   SFL    Y    V +F ++ +V+H ++E
Sbjct: 3   VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 254 FFYWRLPLFYEFTL*FAVITKCFRYI 177
           F +  L   Y + + FA+IT+CFRY+
Sbjct: 25  FTFVSLCFRYVYPVFFAMITRCFRYV 50


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 25  LLTAQFFIQLRYFIHRKVFRRKKGLQTHSF 114
           L+T  +FI L+Y+IH++V+ R +     S+
Sbjct: 771 LITLLYFI-LKYYIHQEVYHRSQHFTPESY 799


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 159 NYKIMLHYKPCKKYRKGMSL*PF 91
           +YK  L  KPCK +R+G    PF
Sbjct: 253 DYKSALGAKPCKYFREGKGTCPF 275


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 257 FFFYWRLPLF-YEFTL*FAVITKCFRYI 177
           FFF      F Y + + FA+ T+CFRY+
Sbjct: 21  FFFAMFTRCFQYVYPVFFAMFTRCFRYV 48


>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +3

Query: 18  ARAVNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 197
           AR     I   T     P+ V K    T + +  IF  +    L +++Y+++H    + C
Sbjct: 427 ARRHRRQINTNTVSPQPPRQVDKAA-VTVAMVILIFLSSWIPILCFSVYELVHTSRVSVC 485

Query: 198 YDCKLKCKF 224
            D + + +F
Sbjct: 486 KDLRFRLRF 494


>SB_54688| Best HMM Match : DUF963 (HMM E-Value=0.017)
          Length = 319

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 90  KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCY 200
           +RATN +L    Y A N+    NLY   +  S T  Y
Sbjct: 218 RRATNLYLATNLYSATNLYSATNLYSATNLYSATNLY 254



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 96  ATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCY 200
           ATN +L    Y A N+ L  NLY   +  S T  Y
Sbjct: 27  ATNLYLATNLYSATNLYLATNLYSATNLYSATNLY 61



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 96  ATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCY 200
           ATN +L    Y A N+ L  NLY   +  S T  Y
Sbjct: 57  ATNLYLATNLYSATNLYLATNLYSATNLYSATNLY 91



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 96  ATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCY 200
           ATN +L    Y A N+ L  NLY   +  S T  Y
Sbjct: 268 ATNLYLATNLYSATNLYLATNLYSATNLYSATNLY 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,750,833
Number of Sequences: 59808
Number of extensions: 107548
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 16,821,457
effective HSP length: 62
effective length of database: 13,113,361
effective search space used: 301607303
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)