Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h10
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0) 32 0.40
SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27) 32 0.53
SB_39717| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_59640| Best HMM Match : RasGEF (HMM E-Value=0.23) 30 1.6
SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1) 29 2.8
SB_50051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_24482| Best HMM Match : KID (HMM E-Value=0.045) 29 2.8
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32) 29 3.7
SB_44712| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23) 29 4.9
SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21) 29 4.9
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1) 29 4.9
SB_18791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_17211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_8547| Best HMM Match : Amelogenin (HMM E-Value=8.1) 29 4.9
SB_46660| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_21408| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_9093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_59487| Best HMM Match : DUF1014 (HMM E-Value=2.4) 28 6.5
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05) 28 8.6
SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_9674| Best HMM Match : Antimicrobial_1 (HMM E-Value=1.1) 28 8.6
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 28 8.6
SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 28 8.6
SB_41570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
Length = 584
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 117 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNE 245
KK +K K +EE+SD + + +DSGE+ PD++ E
Sbjct: 517 KKGKKEKQESESEEESDAEYELGTEDSSEDSGEESGPDSEDEE 559
>SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)
Length = 468
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 153 EEDSDGSGQGAEPEEFQDS--GEDWTPDADSNEPASRT--GRKRVSKAPVNNTKKKR 311
+ED D G+ ++ + +D GE +P ADS EP S T G+K K + KK+
Sbjct: 395 DEDEDHDGEKSDEADHRDEADGEGSSPTADSPEPDSPTKPGQKVKKKKSFKDALKKK 451
>SB_39717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTK 302
+EE+S S + +E E +DS E+W+ + TG++R+ K + K
Sbjct: 40 SEEESSSSEEESEDESDEDSVENWSEQLTHFDLEDFTGQQRLKKTVSEDAK 90
>SB_59640| Best HMM Match : RasGEF (HMM E-Value=0.23)
Length = 299
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSK 281
+EE+S S + +E E +DS E+W+ + TG++R+ K
Sbjct: 40 SEEESSSSEEESEDESDEDSVENWSEQLTHFDLEDFTGQQRLKK 83
>SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 120 KMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTP 227
K +K+KSLK + D S +E DS EDW P
Sbjct: 49 KRKKKKSLKTGQSLFDASDSSSESS--TDSDEDWVP 82
>SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)
Length = 567
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTK 302
+EE+S S + +E E +DS ++W+ + TG++R+ K + K
Sbjct: 40 SEEESSSSEEESEDESDEDSVKNWSEQLTHFDLEDFTGQQRLKKTVSEDAK 90
>SB_50051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTK 302
+EE+S S + +E E +DS ++W+ + TG++R+ K + K
Sbjct: 40 SEEESSSSEEESEDESDEDSVKNWSEQLTHFDLEDFTGQQRLKKTVSEDAK 90
>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
Length = 1714
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 144 KLNEEDSDGSGQ--GAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 314
KL ++ S GSG+ G E SG++ T D S TG+ R PV ++KKRK
Sbjct: 883 KLEDDVSKGSGKRKGMRASEVVISGKEKTGD-------SETGQDRPKGKPVRPSRKKRK 934
>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTK 302
+EE+S S + +E E +DS ++W+ + TG++R+ K + K
Sbjct: 40 SEEESSSSEEESEDESDEDSVKNWSEKLTHFDLEDFTGQQRLKKTVSEDAK 90
>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
Length = 947
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +3
Query: 102 RTIPIKKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSK 281
R +P KR L EE+SDG+G+ + Q SG DW + + S+ K
Sbjct: 31 RDLPQLAREKRHDL---EEESDGAGKDQDSSVHQYSG-DWVEEESGSGAESQFTDANPFK 86
Query: 282 APVNNTKKKRK 314
K +RK
Sbjct: 87 GESKREKHRRK 97
>SB_44712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 81 VSLSYFFRTIPIKKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 254
+S S +P+K++ KSL + +++ GQG E E+ +D+ D D D + S
Sbjct: 695 ISTSLAIEGVPVKQVPHTKSLGVLIDENLSWGQGREVEDEEDN--DKGDDGDEGDDGS 750
>SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23)
Length = 880
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +3
Query: 156 EDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKR--VSKAPVNNTK--KKRKN 317
+D+D S E + Q +WT N+ + TG+K+ SK + N K KKR+N
Sbjct: 205 DDADASESDGEEDTDQAEEPEWT-----NKSSKATGKKKTNTSKKTIKNAKEPKKRRN 257
>SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)
Length = 889
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 153 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRT 260
EE+ +G G+G +D GE D +S P+S T
Sbjct: 261 EEEEEGEGEGGYVSSKEDGGEGEEDDQESYLPSSPT 296
>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
Length = 670
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 165 DGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 314
DG E E+++ G+ W + P +VSK N +KK+K
Sbjct: 524 DGYIPQDEVEKYESKGKQWVNSIPNQPPGMAVEPVKVSKNQKKNERKKQK 573
>SB_18791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 156 EDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKR 311
ED D +G+ ++ E D +D TP + GRK + P NN K +
Sbjct: 81 EDEDRTGKSSDFEGSSDRSDDETPTPTPKKNTPTRGRKG-TLTPKNNPKMSK 131
>SB_17211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSK 281
+EE+S S + +E E +DS ++W+ + TG++R+ K
Sbjct: 81 SEEESSSSEEESEDESDEDSVKNWSEQLTHFDLEDFTGQQRLKK 124
>SB_8547| Best HMM Match : Amelogenin (HMM E-Value=8.1)
Length = 201
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 571 SIFHKFSSSSFDITVSPSHFTSDFSKTKFPEWKCFG 464
+++H +S S V P HFT+ FS + + CFG
Sbjct: 106 AMYHPYSPRS--ALVHPGHFTTIFSPDGYTGYPCFG 139
>SB_46660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 561 TSSVHQVLILQYLHPILHLISARQNFLNGNALVHLSIDLNQICFHRIR 418
TSS+H VL++QYL ++ RQ L N ++ + ++ +C +R
Sbjct: 54 TSSLH-VLVIQYLSLMVSFSKKRQFTLTDNIMMLVVYEILSVCRSNMR 100
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 129 KRKSLKLNEEDSDG----SGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAP 287
+RKS K+ DSDG G G + + +S +D + + + + +K+ K P
Sbjct: 176 RRKSAKVISSDSDGEDDRDGNGEQSKSGSESDDDEEEEEEEEKEEKKLTQKKKGKTP 232
>SB_21408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 314
+EE+S S + +E E +DS ++W+ + TG++R+ K + + K
Sbjct: 40 SEEESSSSEEESEYESEEDSVKNWSEQLTHFDLEDFTGQQRLRKTEADREARLAK 94
>SB_9093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 574 PSIFHKFSSSSFDITVSPSHFTSDFSKTKFPEWK-CF 467
PS+F SS PS FTS S F EW+ CF
Sbjct: 75 PSVFTSLQSSQAFSLHKPSVFTSLQSSQAFKEWRLCF 111
>SB_59487| Best HMM Match : DUF1014 (HMM E-Value=2.4)
Length = 176
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +3
Query: 156 EDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKR 311
+D + G GAE +E + G D + RK++ +N K R
Sbjct: 121 DDDNDDGNGAEDDEDHEDGSGSESDGQGGRRPKKRSRKKIPHHKLNWNAKSR 172
>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 102 RTIPIKKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 254
R + M+KRK + + E DSDGS +PE ++S + + A+ EP+S
Sbjct: 196 RKAAVGGMKKRKRVMI-ESDSDGSDD-FKPES-EESDDSVSSGAEEEEPSS 243
>SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
Length = 1143
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 111 PIKKMRKRKSLKLNEE-DSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAP 287
PIKK++KRK K + + + S ++ E DS + + + + K+ K
Sbjct: 736 PIKKVKKRKETKKSRKYSTTDSDCSSDDGENSDSSRERSIKKHKKKKKRKKKIKKNRKKT 795
Query: 288 VNNTKKKRKN 317
+ N K KN
Sbjct: 796 MENESKNEKN 805
>SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGA-----EPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
++ +LN D D S Q EP D+TPD PAS RK++S N
Sbjct: 21 KQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTPDHSEQAPAS-ASRKKLSDHGYNE 79
Query: 297 T 299
+
Sbjct: 80 S 80
>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 126 RKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASR 257
R RKS ++ E S+ S G PE + T SNEP+ R
Sbjct: 728 RWRKSTEVRAEPSENSEDGNFPETSSTNKSTSTTYPSSNEPSHR 771
>SB_9674| Best HMM Match : Antimicrobial_1 (HMM E-Value=1.1)
Length = 288
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 634 HLCKT-LPFDSIGINFCNNALPSIFHKFSSSSFDITVSPSHFTSDFSKTKFPEWKCFGT 461
H C++ LP S +FC + LP I SF +S +HF D S + + + T
Sbjct: 66 HFCQSFLPIISAN-HFCQSFLPIISANHFCQSFLPIISANHFFPDISSAVLDKCRQYRT 123
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGA-----EPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
++ +LN D D S Q EP D+TPD PAS RK++S N
Sbjct: 21 KQKQELNRSDRDESSQTTRGLDEEPGPSHSRSADYTPDHSEQAPAS-ASRKKLSDHGYNE 79
Query: 297 T 299
+
Sbjct: 80 S 80
>SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGA-----EPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
++ +LN D D S Q EP D+TPD PAS RK++S N
Sbjct: 21 KQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTPDHSEQAPAS-ASRKKLSDHGYNE 79
Query: 297 T 299
+
Sbjct: 80 S 80
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGA-----EPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
++ +LN D D S Q EP D+TPD PAS RK++S N
Sbjct: 1313 KQKQELNRSDRDESSQTTRGLDEEPGPSHSRSADYTPDHSEQAPAS-ASRKKLSDHGYNE 1371
Query: 297 T 299
+
Sbjct: 1372 S 1372
>SB_41570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGA-----EPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
++ +LN D D S Q EP D+TPD PAS RK++S N
Sbjct: 21 KQKQELNRSDRDESSQTTRGLDEEPGPSHSRSADYTPDHSEQAPAS-ASRKKLSDHGYNE 79
Query: 297 T 299
+
Sbjct: 80 S 80
>SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGA-----EPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
++ +LN D D S Q EP D+TPD PAS RK++S N
Sbjct: 21 KQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTPDHSEQAPAS-ASRKKLSDHGYNE 79
Query: 297 T 299
+
Sbjct: 80 S 80
>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGA-----EPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
++ +LN D D S Q EP D+TPD PAS RK++S N
Sbjct: 21 KQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTPDHSEQAPAS-ASRKKLSDHGYNE 79
Query: 297 T 299
+
Sbjct: 80 S 80
>SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGA-----EPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
++ +LN D D S Q EP D+TPD PAS RK++S N
Sbjct: 21 KQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTPDHSEQAPAS-ASRKKLSDHGYNE 79
Query: 297 T 299
+
Sbjct: 80 S 80
>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +3
Query: 114 IKKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVN 293
+KK +K+K+ + SD SG G + + + + D E + + K N
Sbjct: 127 VKKDKKKKNYSKEKGSSDNSGSGDKTTKPEKNDAKKKDKGDKPEKNYAKKKDKGDKPEKN 186
Query: 294 NTKKKRK 314
KKK K
Sbjct: 187 YAKKKNK 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,192,098
Number of Sequences: 59808
Number of extensions: 429310
Number of successful extensions: 1674
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -