Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h10
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79639-6|CAB01919.3| 957|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z79598-9|CAB01869.3| 957|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical pr... 38 0.009
AF519110-1|AAM74224.1| 957|Caenorhabditis elegans EOR-2B protein. 38 0.009
AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein. 38 0.009
AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein. 38 0.009
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 33 0.15
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 31 0.62
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical ... 30 1.9
U41036-1|AAA82384.1| 315|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical p... 29 4.4
Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical... 29 4.4
AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical... 29 4.4
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 29 4.4
AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H... 29 4.4
AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H... 29 4.4
Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical... 28 5.8
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 28 5.8
Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF067216-8|AAN84852.1| 954|Caenorhabditis elegans Hypothetical ... 28 7.6
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ... 28 7.6
AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical ... 28 7.6
AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z79639-6|CAB01919.3| 957|Caenorhabditis elegans Hypothetical
protein C44H4.7b protein.
Length = 957
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 522 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 683
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 686
Query: 684 PI 689
+
Sbjct: 687 RV 688
>Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 522 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 683
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 701
Query: 684 PI 689
+
Sbjct: 702 RV 703
>Z79598-9|CAB01869.3| 957|Caenorhabditis elegans Hypothetical
protein C44H4.7b protein.
Length = 957
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 522 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 683
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 686
Query: 684 PI 689
+
Sbjct: 687 RV 688
>Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 522 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 683
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 701
Query: 684 PI 689
+
Sbjct: 702 RV 703
>AF519110-1|AAM74224.1| 957|Caenorhabditis elegans EOR-2B protein.
Length = 957
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 522 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 683
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 686
Query: 684 PI 689
+
Sbjct: 687 RV 688
>AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein.
Length = 972
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 522 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 683
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 701
Query: 684 PI 689
+
Sbjct: 702 RV 703
>AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein.
Length = 972
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 522 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 683
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 701
Query: 684 PI 689
+
Sbjct: 702 RV 703
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 135 KSLKLNEEDSDGS-GQGAEPEEFQDSGED----WTPDADSNEPASRTGRKRVSKAPVNNT 299
K +K + D D S G G+EP++ DSG + T ++D +E + +K+ SK N
Sbjct: 479 KDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDASGTGESDPDE-ENIEPKKKESKEKKNKR 537
Query: 300 KKKRK 314
+KK K
Sbjct: 538 EKKEK 542
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 135 KSLKLNEEDSDGS-GQGAEPEEFQDSG-EDWTPDADSNEPASR--TGRKRVSKAPVNNTK 302
K +K +ED + S G G+EP++ DSG E + +EP S KR P +
Sbjct: 475 KDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSSGTGESEPDSEQDVPSKRRKGEPKEKRE 534
Query: 303 KKRK 314
KK K
Sbjct: 535 KKEK 538
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 153 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASR 257
EE+S+GS G+E E ++ ED D D EPA +
Sbjct: 214 EEESEGSEDGSEAFEASEASED---DEDDEEPAKK 245
>Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical
protein F23B2.6 protein.
Length = 227
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 432 NKSDSSQSKDVPKHFHSGNFVLLKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMES 611
N +++ S D+ + F G F L K V ++ + + ++ L K D L+QKF +
Sbjct: 86 NLAETVISSDLQELF--GAFNLHKVSVNFNENGGAAGTGDITLKKYDADRLIQKFAGVAL 143
Query: 612 NGRVLH 629
+G+V+H
Sbjct: 144 DGKVMH 149
>AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical
protein H27M09.5 protein.
Length = 341
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 117 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 296
KK K K K ++ + G + E E +++ G D +D E + + ++ S +
Sbjct: 48 KKSMKSKKSKKSKREKKGDNED-EKENYKEDGNDHNNGSDRKEGSKKKKSRQKSMKSSRS 106
Query: 297 TKKKR 311
+KKR
Sbjct: 107 KRKKR 111
>U41036-1|AAA82384.1| 315|Caenorhabditis elegans Hypothetical
protein T14E8.2 protein.
Length = 315
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/60 (18%), Positives = 30/60 (50%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKR 311
+ + +NE+D D + E + ++ ++ D+++ R+R +A ++K++R
Sbjct: 243 KSKMYMNEKDDDDVNKSVEESDEEEENQESEEQEDNDKAEKEEERRRQEEAARQHSKRRR 302
>Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical
protein C01H6.7b protein.
Length = 582
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = +3
Query: 72 RGSVSLSYFFRTIPIKKMRKRKSLKLNE--EDSDGSGQGAEPE-----EFQDSGEDWTPD 230
RG + S +P R K +K E E+ D ++PE E ++SG++ T
Sbjct: 20 RGGNTPSTATPVVPRTSARAAKRVKKEEPEEEEDYKNNNSDPEKSEEDESEESGDEMTTP 79
Query: 231 ADSNEPASRTGRKRVSKAPVNNTKKKRK 314
+ GRK+ +AP+ + K+K
Sbjct: 80 SRKTPGGGAGGRKK-KRAPLTDYHLKKK 106
>Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical
protein C01H6.7 protein.
Length = 636
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = +3
Query: 72 RGSVSLSYFFRTIPIKKMRKRKSLKLNE--EDSDGSGQGAEPE-----EFQDSGEDWTPD 230
RG + S +P R K +K E E+ D ++PE E ++SG++ T
Sbjct: 20 RGGNTPSTATPVVPRTSARAAKRVKKEEPEEEEDYKNNNSDPEKSEEDESEESGDEMTTP 79
Query: 231 ADSNEPASRTGRKRVSKAPVNNTKKKRK 314
+ GRK+ +AP+ + K+K
Sbjct: 80 SRKTPGGGAGGRKK-KRAPLTDYHLKKK 106
>AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical
protein Y18D10A.6b protein.
Length = 655
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 87 LSYFFRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 257
+S+ R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 491 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 550
Query: 258 TGR 266
GR
Sbjct: 551 AGR 553
>AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical
protein Y18D10A.6a protein.
Length = 681
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 87 LSYFFRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 257
+S+ R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 517 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 576
Query: 258 TGR 266
GR
Sbjct: 577 AGR 579
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGE 215
+EED DGSG G E+ +D E
Sbjct: 65 DEEDDDGSGSGGPEEDVEDPNE 86
>AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H
exchanger isoform 8b protein.
Length = 655
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 87 LSYFFRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 257
+S+ R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 491 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 550
Query: 258 TGR 266
GR
Sbjct: 551 AGR 553
>AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H
exchanger isoform 8a protein.
Length = 681
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 87 LSYFFRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 257
+S+ R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 517 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 576
Query: 258 TGR 266
GR
Sbjct: 577 AGR 579
>Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical
protein W07G1.5b protein.
Length = 450
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 153 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPA 251
EE+ +G+G + EE +D ED D EP+
Sbjct: 360 EEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPS 392
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 153 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPA 251
EE+ +G+G + EE +D ED D EP+
Sbjct: 348 EEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPS 380
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 150 NEEDSD-GSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRK-RVSKAPVNNTKKKR 311
+EE S+ GSG+G+E EE + SG+ D+++ E + G+ + + A +KK+
Sbjct: 197 DEEISEKGSGKGSEKEESEGSGK----DSETEEVTMKQGQSLKAAMAKAQKEQKKK 248
>AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical
protein Y71A12B.11 protein.
Length = 286
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 153 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNT 299
E +SD + + E EE +D D + D+D +E G + A N+
Sbjct: 204 EPESDAADESVEEEEEEDEDSDDSDDSDDSEEEEAEGSTAQAPAEKANS 252
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 150 NEEDSD-GSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRK-RVSKAPVNNTKKKR 311
+EE S+ GSG+G+E EE + SG+ D+++ E + G+ + + A +KK+
Sbjct: 197 DEEISEKGSGKGSEKEESEGSGK----DSETEEVTMKQGQSLKAAMAKAQKEQKKK 248
>Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical
protein F54C9.9 protein.
Length = 740
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 132 RKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKK 305
+KSLK ED + AE + D+ E+ DA+ + + G+K+V N ++
Sbjct: 603 KKSLKRKMEDEQMEKEMAEMNDQNDNTEE---DAEKKKKKKKRGKKKVKLTETENPEE 657
>AF067216-8|AAN84852.1| 954|Caenorhabditis elegans Hypothetical
protein C35E7.5b protein.
Length = 954
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKK 305
+EE+ + S + + EE++D ++ + + E G++ + V N K
Sbjct: 901 DEEEDEDSEEDEDEEEYEDEESEYEDEEEDEEEEEEEGKENNEEKKVQNEIK 952
>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
protein C35E7.5a protein.
Length = 1262
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = +3
Query: 150 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKK 305
+EE+ + S + + EE++D ++ + + E G++ + V N K
Sbjct: 901 DEEEDEDSEEDEDEEEYEDEESEYEDEEEDEEEEEEEGKENNEEKKVQNEIK 952
>AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical
protein R119.5 protein.
Length = 659
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 129 KRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDAD-----SNEPASRTGRKRVSKAPVN 293
+R + L+E++ + S EP+E + + D S +PAS T R+R ++P +
Sbjct: 524 ERPNGDLSEDEQELSDALEEPQESPSTSTESQVSEDEEPCCSTDPASTTSRRRRIRSPKS 583
Query: 294 NTKKK 308
+ KK
Sbjct: 584 ESAKK 588
>AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical
protein H42K12.3 protein.
Length = 522
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 156 EDSDGSGQGAEPEEFQDS----GEDWTPDADSNEPASRTGR 266
EDS S + EP+E +++ DWTP SNE R R
Sbjct: 365 EDSADSSRAIEPQEPEETYFSDWSDWTPCTKSNERQVRRRR 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,045,555
Number of Sequences: 27780
Number of extensions: 331717
Number of successful extensions: 1359
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -