Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h10
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.31 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 592 NLSQWNQMEEFYTNVHVCILGGMLTTVTIIT-P*PKYW 702
           +LS W QM + +  + VC +  +  T+T +T P  ++W
Sbjct: 118 SLSCWLQMTKHHNFIKVCSVNDVNMTITELTDPVKEFW 155


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 219 WTPDADSNEPASRTGRKRVSKAPVNNT 299
           W  D+D  E ++R   K   K P N T
Sbjct: 39  WADDSDEEELSARPSFKTFDKGPKNYT 65


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 105 TIPIKKMRKRKSLKLNEEDSDGSGQGAEPEEFQD 206
           TIP +++RKR+  + + E +D      E EE +D
Sbjct: 260 TIPTRRLRKRR--QNDGEGADDRDDDEENEEEED 291


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 162 SDGSGQGAEPEE 197
           SDG G G  PEE
Sbjct: 9   SDGRGNGGTPEE 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,589
Number of Sequences: 438
Number of extensions: 3720
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)