Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h05
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.32 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 35  TPSFRKSKILDIFLIFVLE--IFSKNKQNEDNLVHIVLL 145
           T S  KSKI  +FLI +L+  + ++ + NED+   +V L
Sbjct: 345 TESVLKSKIGQVFLITILDSKVSARIEMNEDDNTSLVSL 383


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 337 SRSFKVATSFTLPFSLASFSSATLVLYCSSVRSLVSRFCLPLSKRRR 197
           S ++ V    + PFS+ SF     +++ SS     S   L ++ RR+
Sbjct: 463 SAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQWSSTHTLDVAWRRK 509


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 337 SRSFKVATSFTLPFSLASFSSATLVLYCSSVRSLVSRFCLPLSKRRR 197
           S ++ V    + PFS+ SF     +++ SS     S   L ++ RR+
Sbjct: 501 SAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQWSSTHTLDVAWRRK 547


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 370 VPKAMTGMNVPSR 332
           VPK++ G+NV SR
Sbjct: 239 VPKSVAGLNVSSR 251


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -3

Query: 262 LYCSSVRS--LVSRFCLPLSKRRRPLPGDSSILTEVIFLNTKKHNMNQIIFILFVLTKDF 89
           +Y SSV S   V++   P++     +PGD+SI+ +         N + +IF+  V    F
Sbjct: 530 IYTSSVNSNLTVNQTVNPVAIN---IPGDTSIIVDSSTSGATIVNYSIMIFLSAVFISFF 586

Query: 88  Q 86
           Q
Sbjct: 587 Q 587


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 477 GKAIKNKIDDGTVRRDELFIMGKLWSTF 560
           G  + + I +GT R     ++G +W+ F
Sbjct: 619 GVLLNSGIGEGTPRSFSARVLGMVWAGF 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,981
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)