Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h04
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    35   0.011
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    30   0.40 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.6  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   2.1  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    27   2.1  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   4.9  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   6.4  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   8.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 24/72 (33%), Positives = 31/72 (43%)
 Frame = +1

Query: 175 TPRTNLPIALQSCKCSTSWPA*CTTKLSCAWL*CSTFIPTRV*SRTTTCSNVLPRNHAST 354
           TP T+ P+   +C  STS P   T   S  +   S+   T     TT C+      + ST
Sbjct: 484 TPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTST 543

Query: 355 NCTSRPCDTTWC 390
             TS P  TT C
Sbjct: 544 PVTSTPLATTNC 555



 Score = 29.5 bits (63), Expect = 0.52
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +1

Query: 175 TPRTNLPIALQSCKCSTSWPA*CTTKLSCAWL*CSTFIPTRV*SRTTTCSNVLPRNHAST 354
           TP T+ P+A  +C  STS P   T   S  +   S+   T     TT C+      + ST
Sbjct: 543 TPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTST 602

Query: 355 NCTS 366
             TS
Sbjct: 603 PITS 606



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +1

Query: 175 TPRTNLPIALQSCKCSTSWPA*CTTKLSCAWL*CSTFIPTRV*SRTTTCSNVLPRNHAST 354
           TP T+ P+A  +C  STS P              ST + T     TT C+      + ST
Sbjct: 438 TPVTSTPLATTNCTTSTSVPY------------TSTPV-TSTPLTTTNCTTSTSIPYTST 484

Query: 355 NCTSRPCDTTWC 390
             TS P  TT C
Sbjct: 485 PVTSTPLTTTNC 496


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 328 HCCRLLSETIPGLE*MLNIITRHRIIWWYIRLAR 227
           +C RLL+  IP L   L++   H+  WW +R  R
Sbjct: 96  NCIRLLTRIIPFLNEKLDLEEWHQKFWWSLRKKR 129


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 253 IWWYIRLARRWSICRIVERWVNWSLGWGIIWVSVWISRHFLF 128
           +WW +   +R     +   W+  S+    + +S +I RH LF
Sbjct: 683 LWWCLHQPKRMMDRSVKTFWIMSSISLTFLCISCFIMRHHLF 724


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 650 EVCC-ARPERVRWLESRDGCDSS 715
           EVC  A  ER+RW+E R G D+S
Sbjct: 734 EVCFDAYSERIRWIEQRCGKDAS 756


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 358 SWCWRDSWVRHCCRLLSE 305
           SW W D ++  CCR LS+
Sbjct: 114 SWRWYDQYMLDCCRSLSD 131


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 184 SLGWGIIWVSVWISRH 137
           ++ W IIW+S+W +R+
Sbjct: 273 AIWWEIIWLSIWAARY 288


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 440 YHSSGLVSHKDSFDNQMHHVVSH 372
           +    L+SHK+ F+  M H V H
Sbjct: 40  FQKKDLISHKNDFERTMRHDVLH 62


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 587 ITCLGLDLLGTET*SPKGDYHRDLHNQPPLPSR 489
           I+CL  DLL      P    + +L+ + P+PS+
Sbjct: 194 ISCLPKDLLKAPPADPSSKENAELYKELPIPSK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,145
Number of Sequences: 5004
Number of extensions: 72688
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)