Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h04
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 33 0.31
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157... 31 1.3
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 2.2
01_01_0082 + 625198-625719 30 2.2
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 29 2.9
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 29 5.1
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 28 6.7
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 28 8.9
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 28 8.9
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 28 8.9
05_04_0404 - 21000267-21001562 28 8.9
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162... 28 8.9
01_06_1498 + 37788855-37788996,37789086-37789303,37789380-377898... 28 8.9
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 347 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 469
P PT P + P A Y YPY P+Q W P+TP
Sbjct: 75 PPPTTP-AYSLPPPAQPYGQYPYPYPSQGQAGAAYWPPSTP 114
>01_01_0185 -
1570942-1571178,1571525-1571656,1571737-1571816,
1571919-1572048,1572136-1572268,1572376-1572497,
1572612-1572749,1572898-1572918,1573493-1573678,
1574576-1574713,1575068-1575532
Length = 593
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 512 YEGHDGSPL--WVIRSQFQGDLIPGKLCVKHF 601
Y G + P+ WVI QGDL+ G C HF
Sbjct: 301 YLGQEKLPIIVWVIAQASQGDLVTGMFCWAHF 332
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 293 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPTTP 469
PG P P P+P++ TP G GY P T P+ S DT+ PTTP
Sbjct: 143 PGGGCSSSPTPCDAP---PSPSSDTSPTTPGGGGGYSPTPSDTPPSPSSDTS----PTTP 195
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 293 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVPTTP 469
PG G P P P+P++ TP G GY P P+ S DT+ PTTP
Sbjct: 169 PGGGGGYSPTPSDTP---PSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTS----PTTP 221
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 293 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVPTTP 469
PG G P P P+P++ TP G GY P P+ S DT+ PTTP
Sbjct: 195 PGGGGGYTPTPSDAP---PSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTS----PTTP 247
>01_01_0082 + 625198-625719
Length = 173
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +2
Query: 293 PGYSLGQQPAAMSYPG-ITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 469
P Y P ++YP TP+ P P+G GY P PT Y+ T T P
Sbjct: 70 PVYYPPPSPPPVAYPPPTTPSTNCPP---PPYGGGGYNPTPSYNPTPGYNPTPSGWFTPP 126
Query: 470 QNASILS 490
S L+
Sbjct: 127 NMPSYLT 133
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 281 HSFQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTP 424
H + P S PAA S P + P + G + HG G Q PY P
Sbjct: 158 HDYPPPPSPAAVPAASS-PSVLPPSASFPGGGSSHGGGGMQMVPYGPP 204
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -1
Query: 445 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 266
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 30 CSICLEAFCDNDPSTVTSCKHEYHLQCILEWCQRSSQCPMCWQPISMKDPMSQELLEAVE 89
Query: 265 RHRII 251
+ R I
Sbjct: 90 QERNI 94
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 320 AAMSYPGITPAPTAPRGHVTPHGA 391
+A S P TP P AP H+ PHG+
Sbjct: 41 SAPSPPHRTPEPVAPVWHLRPHGS 64
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -1
Query: 556 LRPDHPKGTTIVTFITSHHCLLAKYRSIL 470
L DHP TT F TSH CLL Y L
Sbjct: 255 LTMDHPIMTT-TEFWTSHECLLLPYEQAL 282
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 396 PNAPCGVTWPRGAVGAGVIPG*DIAAGCCPRLYPGW 289
P A PR A + G D+ C RL+PGW
Sbjct: 101 PTAAAAALLPRLRRAAAPLRGTDLWVPCWARLHPGW 136
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +2
Query: 296 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYD 439
GY G A Y G+ P P AP H G + PY Q Y+
Sbjct: 252 GYGGGAFQAPAGYYGVAPPPAAPYDH---QGWYYGNRQPYYHQQQCYE 296
>05_04_0404 - 21000267-21001562
Length = 431
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 250 WWYIRLARRWSICRIVERWVNWSLGWGI 167
WWY+ L ++ V +V ++GWG+
Sbjct: 88 WWYLGLCASATVTAAVMSYVQDNVGWGL 115
>03_02_0671 +
10315260-10315370,10315984-10316027,10316141-10316204,
10316278-10316392,10316504-10316571,10316917-10317014,
10317543-10317657,10318425-10318641,10319541-10319667,
10319803-10319857,10319997-10320093,10320748-10320876,
10320964-10321097,10321660-10321746,10321998-10322069,
10322320-10322359,10322535-10322779,10323587-10323764,
10323931-10324136,10324681-10324977
Length = 832
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -1
Query: 442 CIIAL--GWCHIRIALITKCTMWCHMAARCSWCWRDS 338
C+ AL G CHIR + +W WCW +S
Sbjct: 401 CLHALWFGNCHIRAIAV----LWIDFVREIRWCWEES 433
>01_06_1498 +
37788855-37788996,37789086-37789303,37789380-37789819,
37789916-37790762
Length = 548
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 250 WWYIRLARRWSICRIVERWVNWSLGWGI 167
WWY + ++ +V +V ++GWG+
Sbjct: 185 WWYFGMCAGTAVTTMVSSYVQDNVGWGL 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,287,712
Number of Sequences: 37544
Number of extensions: 525527
Number of successful extensions: 1466
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -