Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h04
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 31 0.97
SB_31553| Best HMM Match : RCSD (HMM E-Value=2.7) 30 2.3
SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06) 30 2.3
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_40430| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-19) 29 3.9
SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08) 29 3.9
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 29 3.9
SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09) 29 3.9
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_49922| Best HMM Match : PAN (HMM E-Value=2.1) 28 9.1
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_32746| Best HMM Match : Lentiviral_Tat (HMM E-Value=6.8) 28 9.1
SB_29793| Best HMM Match : Trigger_N (HMM E-Value=3.3) 28 9.1
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 31.1 bits (67), Expect = 0.97
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 296 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQN 475
G++ +SYPG PA A G P G +YP P Q T+ +P P
Sbjct: 34 GFNPPPSSVPVSYPGPPPAMYAVPGMPMPPAYPGMPTYP-PQPMQFLPGTLPGMPPPPMF 92
Query: 476 ASILSEKAV 502
A +++ +A+
Sbjct: 93 AQMMAPQAM 101
>SB_31553| Best HMM Match : RCSD (HMM E-Value=2.7)
Length = 139
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 545 SPKGDYHRDLHNQPPLPSR*V-SKHFE 468
SPKGD D+ + PP S+ + SKHFE
Sbjct: 100 SPKGDQSTDIPDYPPTKSQRIPSKHFE 126
>SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)
Length = 88
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 332 YPGIT--PAPTAPRGHVTPHGAFGYQSYP 412
YPGI P P RG + P G GYQ P
Sbjct: 2 YPGIEGPPGPKGDRGPIGPRGPQGYQGAP 30
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 296 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT--PTQSYDTTIEWVPTTP 469
G ++ PA + P + PT P G P G S P V PT T+ PT P
Sbjct: 466 GPTVPSGPAVPTGPTVPSGPTVPSGPTVPSGP-TVPSGPTVPSGPTVPSGPTVPSGPTVP 524
Query: 470 QNASIL 487
++++L
Sbjct: 525 SDSTVL 530
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +2
Query: 317 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT--PTQSYDTTIEWVPTTPQNASILS 490
P S P + PT P G P G S P V PT T+ PT P ++ S
Sbjct: 455 PTVPSDPTVPAGPTVPSGPAVPTGP-TVPSGPTVPSGPTVPSGPTVPSGPTVPSGPTVPS 513
Query: 491 EKAVVAG 511
V +G
Sbjct: 514 GPTVPSG 520
>SB_40430| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-19)
Length = 253
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 499 CLLAKYRSILRSCRNPFNCCIIALGWC 419
CL + R RSC P+NC +I C
Sbjct: 36 CLRVEIRGCERSCTTPYNCALILTTAC 62
>SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)
Length = 281
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 428 QSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLWVI 547
Q +D I + + PQN ++ S ++V Y+ H PLW++
Sbjct: 87 QLFDAAISAI-SHPQNMALCSVDSMVLKYKKHGFEPLWLL 125
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 434 YDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLWVIRSQF 559
Y+ + W+ ++S+ S +V GY DG P W++++ +
Sbjct: 381 YNKAMSWIYLHDSSSSVHS--VLVVGYGVEDGEPYWLVKNSW 420
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +2
Query: 284 SFQPGYSLGQQPAAMSYPGITPAPT-APRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVP 460
S+ P S P+ TP P+ P T Y P TPT SY T + P
Sbjct: 7 SYTPTTSYTSTPSYTPTTSYTPTPSYTPTTSYTC--TTSYTPTPSYTPTPSYTPTTSYTP 64
Query: 461 TT 466
TT
Sbjct: 65 TT 66
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 284 SFQPGYSLGQQPAAMSYPGITPAPT-APRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVP 460
S+ P S P+ S TP + TP + Y P TPT SY +T + P
Sbjct: 79 SYTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPS--YTPTPSYTPTPSYTSTTSYTP 136
Query: 461 TT 466
TT
Sbjct: 137 TT 138
>SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)
Length = 305
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 428 QSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLWVI 547
Q +D I + + PQN ++ S ++V Y+ H PLW++
Sbjct: 87 QLFDAAISAI-SHPQNMALCSVDSMVLKYKKHGFEPLWLL 125
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Frame = +2
Query: 362 PRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGSPLW 541
P+ P GA Y S P S +WV PQ A+I A +GSPLW
Sbjct: 2930 PKSKKRPKGAPFYASDG---PMHSTPMVHQWVRANPQCATISEAPPPWATMS--EGSPLW 2984
Query: 542 VIRSQ---FQGDLIPGKLCVKHFSAYVPW 619
V S+ L G + A PW
Sbjct: 2985 VTMSEASLLWSTLSKGNPWTTMYEASPPW 3013
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 317 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPTTPQ 472
PAA + PG P + + H + YQS + P +Y ++ +W+P PQ
Sbjct: 473 PAANTAPGYVLPPVSTLTN-KGHDSTQYQSAQFAQIPPGAYPSSDQWIPAYPQ 524
>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1816
Score = 28.7 bits (61), Expect = 5.2
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Frame = -1
Query: 562 LELRPDHPKGTTIVTFITSHHCLLAKYRSILRSCRNPFNCCIIALGWCHIRIALITKCTM 383
LE+ + G T++ F T HC L +L + + ++ C+ W H+ C
Sbjct: 219 LEVAMETHDGNTVIGF-TQRHCALQL--KVLGN-KISYDNCVCNKIWRHV-------CVT 267
Query: 382 WCHMAARCSW-CWRDSWVRHCCRLLSE--TIPGLE*MLNIITRHRIIW 248
W A W + D V RLLS T+PG +L+I+ R ++ W
Sbjct: 268 WKSHAG--VWEIYLDGQVIGFGRLLSARLTLPGNNRILSIMPRRKVTW 313
>SB_49922| Best HMM Match : PAN (HMM E-Value=2.1)
Length = 219
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -1
Query: 424 WCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIP 296
W H + +C CH A RC W S V C ++S P
Sbjct: 165 WFHENVTSSKECAWLCHQATRC-MAW--SLVEDRCVMMSNMPP 204
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = +2
Query: 293 PGYSLGQQPAAMSYPGITPAPT-APRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 469
P S QP P TPAPT A TP P PTQ+ PT
Sbjct: 708 PTLSTAAQPTQAQNPAPTPAPTQAQNPAPTPAPTQAQNPAPTPAPTQAQPPVPSPAPTQA 767
Query: 470 Q 472
Q
Sbjct: 768 Q 768
>SB_32746| Best HMM Match : Lentiviral_Tat (HMM E-Value=6.8)
Length = 171
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 169 SPTPRTNLPIALQSCKCSTSWPA*CTTKLSCAW 267
SP+P + C W CT LSCAW
Sbjct: 126 SPSPYIRSACGGRVCNWIVKWVFSCTPDLSCAW 158
>SB_29793| Best HMM Match : Trigger_N (HMM E-Value=3.3)
Length = 533
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 317 PAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNAS 481
P+ G PAP++P+G V+ Q P + T+ WV P AS
Sbjct: 124 PSKAHAEGEAPAPSSPQGEVS--DKLDPQRTPRTPLGLKAERTVHWVTLNPSTAS 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,342,514
Number of Sequences: 59808
Number of extensions: 595801
Number of successful extensions: 1644
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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