Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h04
(739 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family... 33 0.15
At4g31090.1 68417.m04413 expressed protein 32 0.46
At2g28580.1 68415.m03472 hypothetical protein contains Pfam prof... 31 0.60
At4g39980.1 68417.m05662 2-dehydro-3-deoxyphosphoheptonate aldol... 31 1.1
At4g19420.1 68417.m02857 pectinacetylesterase family protein con... 31 1.1
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 29 4.3
At3g14370.1 68416.m01818 protein kinase family protein contains ... 28 5.6
At3g11810.1 68416.m01447 expressed protein 28 7.4
At1g30780.1 68414.m03763 F-box family protein 28 7.4
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 27 9.8
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 27 9.8
At1g66060.1 68414.m07498 hypothetical protein contains Pfam PF04... 27 9.8
At1g53700.1 68414.m06110 protein kinase, putative similar to cuc... 27 9.8
At1g22570.1 68414.m02818 proton-dependent oligopeptide transport... 27 9.8
>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
protein Contains similarity to pre-mRNA processing
protein PRP39 gb L29224 from S. cerevisiae. ESTs
gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
from this gene
Length = 768
Score = 33.5 bits (73), Expect = 0.15
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 287 FQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPT 463
+ P Y GQQ A +Y G TAP+ A Y +YP T PTQSY +
Sbjct: 689 WNPAY--GQQAAYGAYGGYPAGYTAPQAPTPVPQAAAYGAYPAQTYPTQSYAPPV--AAA 744
Query: 464 TPQNASILSEKAVVA 508
P A + A VA
Sbjct: 745 APAAAPVQQPAAAVA 759
>At4g31090.1 68417.m04413 expressed protein
Length = 250
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 380 PHGAFGYQSYPYVTPTQSYDTTIEWVP-TTPQNASILSEKAVVAGYEGHDGSPLWVIR 550
PHG+ G S + + T E P TT QN +L E GY HDGS W+ R
Sbjct: 87 PHGS-GSTSTHHSDDESHHSGTSERFPGTTEQNQQMLVEHYSPQGYAAHDGS--WISR 141
>At2g28580.1 68415.m03472 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 468
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 407 YPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGYEGHDGS 532
YP T Y + ++++ T Q+ +L++K +V + GH GS
Sbjct: 333 YPRTTFVCDYISFLDFLINTDQDVDLLAKKGIVKNWLGHQGS 374
>At4g39980.1 68417.m05662 2-dehydro-3-deoxyphosphoheptonate aldolase
1 / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
1 / DAHP synthetase 1 (DHS1) nearly identical to
SP|P29965
Length = 525
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 556 LRPDHPKGTTIVTFITSHHCLLAKY-RSILR--SCRNPFNCCIIALGWC 419
L DHP TT F TSH CLL Y +S+ R S + C + WC
Sbjct: 288 LGTDHPLMTT-TDFYTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMVWC 335
>At4g19420.1 68417.m02857 pectinacetylesterase family protein
contains Pfam profile: PF03283 pectinacetylesterase
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 475 ILRSCRNPFNCCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDS 338
+++ R F +I LG R I C C + SW W+DS
Sbjct: 304 VMQDFRLEFLSAVIGLGRSSSRGMFIDSCYTHCQTETQTSWFWQDS 349
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = -1
Query: 445 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 266
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 33 CSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVE 92
Query: 265 RHR 257
+ R
Sbjct: 93 QER 95
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = -1
Query: 445 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 266
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 33 CSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVE 92
Query: 265 RHR 257
+ R
Sbjct: 93 QER 95
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = -1
Query: 445 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 266
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 33 CSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVE 92
Query: 265 RHR 257
+ R
Sbjct: 93 QER 95
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +2
Query: 356 TAPRGHVTPHGAFGYQSYPY---VTPTQSYDTTIEWVPTTPQNASILSEKAVVAGYEGHD 526
T P VT GA Y S P P+Q+ T + + TT +N + + V G D
Sbjct: 151 TNPTSGVTM-GASTYSSIPSEASAAPSQTLLTKVSSISTTDENKASVVRSHEVPGKSSTD 209
Query: 527 GSPL 538
G PL
Sbjct: 210 GRPL 213
>At3g14370.1 68416.m01818 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 480
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -3
Query: 626 FLPTEHMQRNVSRITCLGLDLLGTET*SPKGDYHRDLHNQP--PLPSR*VSKHFEEL*EP 453
FLPT + + + S TCL +D +P GD H L QP LP + V E+
Sbjct: 147 FLPTLYARIDESHYTCLLIDY------APNGDLHSLLRKQPGNRLPIQPVRFFAAEVLVA 200
Query: 452 IQLLYHSSGLV 420
++ L H+ G+V
Sbjct: 201 LEYL-HAMGIV 210
>At3g11810.1 68416.m01447 expressed protein
Length = 348
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 313 LSETIPGLE*MLNIITRHRIIWWYIRLARRWSICRIVERWVNWSLGWGIIWV-SVW 149
L ETIPG+E + + + ++ L SI V+ +VNW L W ++ V S W
Sbjct: 168 LIETIPGVE--FDYASSY--FQGFVTLVTIISIAIAVKLYVNWILAWVVVVVESAW 219
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 347 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 469
P P P P F QS PY +D + W+P+TP
Sbjct: 105 PVPVWPSLPEYPPFPFVDQSAPYQGFAPRFDESANWMPSTP 145
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 281 HSFQPGYSLGQQPAAMSYPGITPAPTAPRGHVTP 382
+S P +SL P++ SYP T +P+ H TP
Sbjct: 343 YSSSPSFSLN--PSSSSYPTSTSSPSFLHSHYTP 374
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 621 EEKKMPFKTLRCAVPVLKGSGGWK 692
+E+K P K +R VP G G WK
Sbjct: 868 QERKEPVKPVRSIVPQNSGIGSWK 891
>At1g66060.1 68414.m07498 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577); common family
comprised of At4g09440, At1g66000, At1g66060
Length = 315
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +2
Query: 350 APTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGYEG 520
+P P AF + P+V PT + + P P++ I + VA Y G
Sbjct: 6 SPKQPTSQDFTKAAFKLLANPHVEPTVEFIAALTKPPENPEDKDIKFFRFCVANYPG 62
>At1g53700.1 68414.m06110 protein kinase, putative similar to
cucumber protein kinase CsPK3 [Cucumis sativus]
gi|7416109|dbj|BAA93704
Length = 476
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 626 FLPTEHMQRNVSRITCLGLDLLGTET*SPKGDYHRDLHNQP 504
FLPT + + + S TCL +D P GD H L QP
Sbjct: 153 FLPTLYARIDASHYTCLLIDY------CPNGDLHSLLRKQP 187
>At1g22570.1 68414.m02818 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 565
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = -1
Query: 250 WWYIRLARRWSICRIVERW----VNWSLGWGI 167
WW++ L+ SI IV + VNW+ G+GI
Sbjct: 192 WWFLSLSAGISISIIVVAYVQENVNWAFGFGI 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,201
Number of Sequences: 28952
Number of extensions: 400205
Number of successful extensions: 1101
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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