Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h03
         (759 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    31   0.008
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    31   0.008
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   4.6  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 508 YKESFELIEPFAVRLCSHKQKQFPNNFSSLHSCNLFIYFCQHFCRLMNVFKLISNVD 338
           Y   F+LI  F       K + F   FSSL SC   I+ C    +++ VFK I  VD
Sbjct: 70  YHAIFDLIS-FKDSDLQQKLRYFEEVFSSLLSCCSVIFGCIFALKVIEVFKNIEEVD 125


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 508 YKESFELIEPFAVRLCSHKQKQFPNNFSSLHSCNLFIYFCQHFCRLMNVFKLISNVD 338
           Y   F+LI  F       K + F   FSSL SC   I+ C    +++ VFK I  VD
Sbjct: 70  YHAIFDLIS-FKDSDLQQKLRYFEEVFSSLLSCCSVIFGCIFALKVIEVFKNIEEVD 125


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 26/110 (23%), Positives = 44/110 (40%)
 Frame = +2

Query: 377 AKMLTEINEQITAMQR*EIIGKLFLFVTTQTNGKRFNQLKAFFIVVVTKLLCVRDFKLY* 556
           A +L  IN QIT +        LF+ + +     RF Q+      V ++ +      +  
Sbjct: 211 ALVLQTINLQITFIWT---YNDLFVMLISTALAYRFGQITRRIAAVASEKVTSEKSWIAL 267

Query: 557 ISKKNINCGHYLIICCRILDFVFSH*TIFLNG*YFM*FGI*D*IFVHDCT 706
               N  C H   +    L ++    T FLN  YF+ F + +  ++H  T
Sbjct: 268 NDDYNRLC-HLCFLLDEKLSYIIL--TSFLNNFYFIIFQVFESFYLHKAT 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,137
Number of Sequences: 336
Number of extensions: 3504
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)