Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h03
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.18
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 29 0.95
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 1.7
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 28 1.7
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 2.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.9
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 26 5.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 6.7
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 6.7
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 6.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.9
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 8.9
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 25 8.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.9
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.1 bits (67), Expect = 0.18
Identities = 24/134 (17%), Positives = 60/134 (44%)
Frame = +2
Query: 17 ENYTLNCGPNKIEKQFFFQSI*LNFYGNRIKMTSASSSSARNLFAESKQRLAERVQVNMN 196
EN G +K+ K+ + L N ++ + +NL ++++R + +Q+ +
Sbjct: 806 ENKKDQSGTDKLMKKIYHCEQSLKEKTNSLETLVSEKKELKNLL-DAERRSKKAIQLELE 864
Query: 197 NISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGYQFENIHKS 376
N+SS A + S+ +RE+ + + +E +++ + +I +F ++
Sbjct: 865 NLSSQAFRRNLSGSSSPSERSQSRELKLLQASEKRLKEQVEERNSLIKNIVTRFTQLNTG 924
Query: 377 AKMLTEINEQITAM 418
+K + E +T +
Sbjct: 925 SKPVNTNVEALTTI 938
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 28.7 bits (61), Expect = 0.95
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +2
Query: 122 SSSSARNLFAESKQRLAER-VQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIE 298
SS+ A F ++ A+R +Q + + ++ +Q G +++ RE+ + Q+E
Sbjct: 415 SSNDAEEQFKQNVVNEAKRYLQETILRLQAIPYHLQVGQAWT---SESERELEKKKEQVE 471
Query: 299 TSEENLKKMQLIAVHIGYQFENIHKSAKMLTEINEQITAM 418
+E L + +++ + EN+ + AK + +E T +
Sbjct: 472 KKQEELMQTRIVLEEQVFLVENMIEDAKAKRKFSEVETLL 511
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 146 FAESKQRLAERVQVNMNNISSLARQI----QRGSKSNELLTKAAREMASTEHQIETSEEN 313
F+ K++ ++ + M + SL ++ Q+ K+NE+++K + H+I E+
Sbjct: 466 FSVEKEKAEQKYFLTMKSTDSLHAEVKLLRQKYQKTNEIISKMLNSQDTAVHRIIEFEDQ 525
Query: 314 LKKMQLI 334
L ++ +
Sbjct: 526 LARLSSV 532
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.9 bits (59), Expect = 1.7
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Frame = +2
Query: 245 ELLTKAAREMASTEHQIETSEENLKKMQLIA--VHIGYQFENIHKSAKMLT--EINEQIT 412
E+L A T + +S ENLK M ++ QFE H + E +E++
Sbjct: 231 EILLNRANRSVMTRYI--SSAENLKLMMILLRDKSKNIQFEAFHVFKLFVANPEKSEEVI 288
Query: 413 AMQR*---EIIGKLFLFVTTQTNGKRFNQLKAFFIVVVTKL 526
+ R ++I L F T + N ++FN +AF I + +L
Sbjct: 289 EILRRNKSKLISYLSAFHTDRKNDEQFNDERAFVIKQIERL 329
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 128 SSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQ 292
S +NL E V + + +L Q+Q + S ELL K ++ STE +
Sbjct: 957 SQLKNLTLSLVVNAEEGVFSTLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDE 1011
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 173 ERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGY 352
ER +V + L +I + + NELL K + + ++ + + ++ + +VH
Sbjct: 1502 ERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADT 1561
Query: 353 Q-FENIHKSAKMLT 391
+ EN+ K+ +ML+
Sbjct: 1562 KDLENLKKTEEMLS 1575
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +2
Query: 182 QVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGYQFE 361
Q ++ + I++GS + L++K + + + E KK+ I HIG
Sbjct: 16 QGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIA 75
Query: 362 NIHKSAKMLTEINEQ 406
+ A++L+ +Q
Sbjct: 76 GLAPDARVLSNYMKQ 90
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 6.7
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +2
Query: 92 YGNRIKMTSASSSSARNLFAESKQRLAER----VQVNMNNIS-SLARQIQRGSKSNELLT 256
+ N IK++ SS + ++ R +Q ++N + S + I+ SK +
Sbjct: 36 HSNHIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKHLNTETPSFSVSIENPSKPSAAFN 95
Query: 257 KAAREMASTEHQIETSEENLKKMQL 331
A+ STEHQI+ +Q+
Sbjct: 96 DASLGKKSTEHQIDGIRNGSSNLQM 120
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 256 KSSKRNGINRTSD*NQ*GKFEEDAINSSPHWIS 354
K K INR ++ +ED N+SPHW S
Sbjct: 208 KKRKHENINRGTNARP---LKEDRANTSPHWYS 237
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.8 bits (54), Expect = 6.7
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Frame = +2
Query: 8 NIFENYTLNCGP-NKIEKQFFFQSI*LNFYGNRIKMTSASSSSARNL--FAESKQRLAER 178
NI+ N CG N + F + S+ ++ + + SS F + AER
Sbjct: 374 NIYINGPKGCGKSNLVHSLFDYYSLNSIYFQMIVSCSEIDRSSFAKFQSFWNNVFIQAER 433
Query: 179 VQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLK-KMQLIAVHIGYQ 355
+ ++ + + I +++ EL RE+A +HQI NLK K ++I + G +
Sbjct: 434 YEPSIIYLDDVHCLISSSNENGELGFVEEREIAFLQHQI----INLKRKRKIIFIGFGEE 489
Query: 356 F 358
F
Sbjct: 490 F 490
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 92 YGNRIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLAR 217
+G R + S SS RNL +S++ L E + +N+S L R
Sbjct: 364 HGKRRNLKSLRSS--RNLHQQSRKSLDENKPNSFSNVSKLKR 403
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = -2
Query: 188 SLALFQRAFVWTPRTN------S*RYWMMRKSF*FYFHKNLIKLIEKKIVFLFC 45
+LALF +F+ RTN + Y ++K+F FHK+ I + +++LFC
Sbjct: 152 TLALFTYSFLMVWRTNPNIPPATSPYAAIQKAFPL-FHKDAIICMMLSVIWLFC 204
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 394 FCQHFCRLMNVFKLISNVD 338
F HF + NVF L SNVD
Sbjct: 54 FFIHFSKKSNVFSLFSNVD 72
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 593 LNNVHNLCSFLKSNTI*NLVHIKA 522
LN +H+ F+K N + N +H+ +
Sbjct: 154 LNKIHDPSRFIKDNDVENRIHVSS 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,117
Number of Sequences: 5004
Number of extensions: 56174
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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