Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h03
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0274 - 2114076-2115506,2117897-2118114,2118251-2118371           31   1.3  
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087...    30   1.7  
10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839     30   2.3  
06_02_0293 + 13849250-13849341,13850044-13850112,13850257-138502...    29   4.0  
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381...    29   5.3  
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439...    29   5.3  
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205...    28   7.0  

>03_01_0274 - 2114076-2115506,2117897-2118114,2118251-2118371
          Length = 589

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 594 LFAVGF*ILFSATELFFLMDNILCNLGFEIEYLFMTVLYKYFI 722
           +F +   ILFS+T L +L DN+  ++G+ I  L + V    F+
Sbjct: 193 MFTIFVGILFSSTVLVYLQDNVSWSVGYGIPTLGLLVSISIFL 235


>05_06_0066 +
           25307863-25307871,25308431-25308570,25308712-25308754,
           25308994-25310022
          Length = 406

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 137 RNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIE 298
           R   A    R+AER++ +     +L  ++QRG   +E   KAA E A+    +E
Sbjct: 295 RESAAREAARVAERLRASERAREALEAELQRGRAQSEQWRKAAEEAAAVLAAVE 348


>10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839
          Length = 626

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 594 LFAVGF*ILFSATELFFLMDNILCNLGFEIEYLFMTVLYKYFI 722
           +F +   ILFS T L +L DN+   +G+ I  L + V    F+
Sbjct: 215 MFTIFLGILFSTTVLVYLQDNVSWTVGYGIPTLGLMVSVAVFL 257


>06_02_0293 +
           13849250-13849341,13850044-13850112,13850257-13850266,
           13850448-13850483,13850978-13851039,13851260-13851359,
           13851428-13851469,13851756-13851839,13851955-13852095
          Length = 211

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +2

Query: 140 NLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLK 319
           NL  E  Q  AER++  ++N+    RQ+     +++L      ++ S E+Q+ETS  N++
Sbjct: 65  NLCLEFWQAEAERLKQQLHNLEGSQRQL----LAHDLSGLEWNDLKSLENQLETSLHNVR 120

Query: 320 -KMQLIAVHIGYQFENIHKSAKMLTEINEQI 409
            K   I V    Q + + K   ++   N ++
Sbjct: 121 LKKDKIMVE---QIQELRKKENIMHRENMEL 148


>07_03_1198 +
           24734985-24735169,24737897-24737975,24738070-24738134,
           24738214-24738313,24738429-24738470,24739062-24739100,
           24739140-24739330,24739745-24739850
          Length = 268

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = +2

Query: 152 ESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENL--KKM 325
           E ++   +   +  + + +L +  QR     +L T   +E+   EHQ+E S +++  KK 
Sbjct: 86  EDQENWGDEYGILKSKLDALQKS-QRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKN 144

Query: 326 QLIAVHIGYQFENIHKSAKMLTEINEQIT 412
           QL+   I  + +   KS K    + ++IT
Sbjct: 145 QLLFESIS-ELQKKEKSLKNQNNVLQKIT 172


>01_06_1723 -
           39443176-39443505,39443615-39443710,39443834-39443902,
           39444381-39444443,39444521-39444598,39444725-39444838,
           39445727-39445804,39446457-39446522,39446739-39446804,
           39446896-39447003,39447355-39447432,39447951-39448010,
           39448087-39448191,39448407-39448595,39448922-39448985,
           39449244-39449385,39449494-39449654,39449952-39450076,
           39450230-39450300,39450410-39450560,39450713-39450769,
           39451049-39451143,39451331-39451379
          Length = 804

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +2

Query: 92  YGNRIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELL---TKA 262
           Y N++  T AS S    L  + +  +    +V+ + ++++ +Q   G+K+ E L   T A
Sbjct: 9   YINQMFPTEASLSGVEPLMQKIQSEIR---RVDASILAAVRQQSNSGTKAKEELAAATNA 65

Query: 263 AREMASTEHQIETSEENLKKM 325
            +E+    H+I+T  E  + M
Sbjct: 66  VQELMHKIHEIKTKAEQSESM 86


>01_01_0250 +
           2052599-2053358,2053581-2053604,2054813-2054848,
           2055047-2056284
          Length = 685

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 255 VNSSLDLEPL*ICLANDEILFIFTCTLSA 169
           V++SL L P     AN +++F+F CT S+
Sbjct: 118 VSASLTLAPFTASPANSQLVFLFNCTSSS 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,893
Number of Sequences: 37544
Number of extensions: 280246
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)