Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h03
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_17310| Best HMM Match : Filament (HMM E-Value=0.31)                 32   0.58 
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        30   2.3  
SB_28378| Best HMM Match : DUF1542 (HMM E-Value=7.7)                   29   4.1  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       28   7.2  
SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_8578| Best HMM Match : DUF807 (HMM E-Value=6.7)                     28   7.2  
SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)                  28   9.5  

>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = +2

Query: 101  RIKMTSASSSSARNLFAESKQRLAE---RVQVNMNNISSLARQIQRGSKSNELLTK---- 259
            +++     +  A++L  E  ++LA     +    N I SL  +I    K N  L K    
Sbjct: 854  KVQRNKEETLMAQSLVQEKGRKLASYRSEMDEKENQIRSLLNRIDSVEKDNTKLKKEKVV 913

Query: 260  AAREMASTEHQIETSEENLKKMQLIAVHIGYQFENIHKSAKMLTE 394
               +  + +HQ+  +EEN KKM+     +      + K  +M+ E
Sbjct: 914  VQFQQGAMKHQLAEAEENSKKMKAQLHEMELAIAELQKEKEMVDE 958


>SB_17310| Best HMM Match : Filament (HMM E-Value=0.31)
          Length = 458

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
 Frame = +2

Query: 101 RIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQ----RGSKSNELLTKAAR 268
           R+K    +++++ +    S Q L ERV  +  ++S + +Q++     G +  E + +A  
Sbjct: 122 RLKDEEVAAATSAHAHTRSLQSLMERVMSSTRDVSDMRQQLETTHKSGMEERETVARARD 181

Query: 269 EMASTEH------QIETSEENLKKMQLIA---VHIGYQFENIHKSAKMLTEINEQITAMQ 421
           E  +  H      Q ET EE  +   LIA   +H+  Q   + +    L+    ++  +Q
Sbjct: 182 EYLAQLHDRLVRQQAETEEERTRLQGLIAKMELHLREQTRQLDQEKWRLSAEEARVKTLQ 241


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/90 (23%), Positives = 41/90 (45%)
 Frame = +2

Query: 98  NRIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMA 277
           N+++ T A    +    +ES ++L E  Q NM N  +    ++   K   L         
Sbjct: 339 NKMRRTIADLEESLKRKSESLRKLEEEYQANMKNSQNEVENMESKMKIENL--------- 389

Query: 278 STEHQIETSEENLKKMQLIAVHIGYQFENI 367
             EH+++T +  LK+ Q+   ++  + EN+
Sbjct: 390 --EHELQTKDALLKQTQVTVRNLRAKTENL 417


>SB_28378| Best HMM Match : DUF1542 (HMM E-Value=7.7)
          Length = 63

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 233 SKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGYQFENIHKSAKMLTEINEQIT 412
           SK++  +T   ++  S E Q+ET++E LKK +    H   Q E +    +M     E++ 
Sbjct: 2   SKADRQVTNIGKQKESIETQLETAKEELKKSK--ETHCDLQKELLEHQEQM-ANYKEELA 58

Query: 413 A 415
           A
Sbjct: 59  A 59


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 143  LFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKK 322
            L  E+K+ L E        +  L   ++ G+ S+E     A E+   + +    E+NLKK
Sbjct: 1603 LAQEAKKTLLEASDERDRELEHLKEMLEYGASSSEKSHVLACELGREKERAAHLEDNLKK 1662

Query: 323  MQ 328
            +Q
Sbjct: 1663 LQ 1664


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 92  YGNRIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAARE 271
           YGN  K  +A SSS+      S+ R  +    +    SS  R I++ S        ++  
Sbjct: 31  YGNNRKQRNAQSSSSTETSQRSRARKRQSSSSSSTTSSSPERNIKKKSSKAPKRQSSSSS 90

Query: 272 MASTEHQIETSEENLK 319
            +S + + +  +  LK
Sbjct: 91  SSSPKRKTKKKQHRLK 106


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
 Frame = +2

Query: 104 IKMTSASSSSARNL--FAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMA 277
           +KM  A +   R L    E  ++  +R + ++    +  ++++      E + K   EMA
Sbjct: 599 LKMKEAKTYRERELKKAEEDLKKAKKRAEQSIKETKTKQQEVEGMQLEIEEIVK---EMA 655

Query: 278 STEHQIETSEENLKKMQLIAVHIGYQFENIHKSAKMLTEINEQIT 412
           S E Q+   +EN+ K +        Q E   + AK    INE+++
Sbjct: 656 SIEEQVTKVDENIAKCE-------EQVEKCSEKAKQTQAINEKLS 693


>SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 120 HHPVALGICSRSPNKGSLKEC 182
           HHP+ L  CS + ++G++ EC
Sbjct: 186 HHPLTLNHCSSNESQGAVHEC 206


>SB_8578| Best HMM Match : DUF807 (HMM E-Value=6.7)
          Length = 139

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 120 HHPVALGICSRSPNKGSLKEC 182
           HHP+ L  CS + ++G++ EC
Sbjct: 109 HHPLTLNHCSSNESQGAVHEC 129


>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
          Length = 1185

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 152 ESKQRLAERVQVNMNNIS--SLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKM 325
           E+K+   E    N +  S  S A     G +++ LLT   + +A     I+  +  ++ +
Sbjct: 489 EAKRGSQEERTGNSSRTSRESEALNASEGKETSWLLTACVKAVAKQPRDIQPMQVRIEAI 548

Query: 326 QLIAVHIGYQFENIHKSAKMLTEI 397
           Q++   +   FE+     ++L++I
Sbjct: 549 QVLTAFVRNYFEHASSHVQLLSKI 572


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,248,716
Number of Sequences: 59808
Number of extensions: 349862
Number of successful extensions: 948
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)