Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h03
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   5.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.5  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 223 NLSRQRRNIVHIHLHSFSEPLFGLREQIPSATG*CGSH 110
           +L+R RR+I ++H     EP+  + +++ S+     +H
Sbjct: 14  SLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNH 51


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
 Frame = +2

Query: 44  NKIEKQFFFQSI*LNFYGNRIKMTSASSSSARNL---FAESKQRLAERVQVNMNNISSLA 214
           NKIE+      + +   GN  K  + SS+S RN    F  +  R +     + +      
Sbjct: 187 NKIEEHDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREYK 246

Query: 215 RQIQRGSKSNELLTKAAREMASTEHQIETSEENLK 319
           ++ +R  K +    K   E  S +    + E   K
Sbjct: 247 KKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQK 281


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 403 TNYSYAKMRNYWETVFVCDY 462
           TNYS   MR Y +  +  DY
Sbjct: 204 TNYSSKNMREYNDPEYKLDY 223


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 52  RKTIFFSINLI 84
           RKT+F+++NLI
Sbjct: 231 RKTLFYTVNLI 241


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 52  RKTIFFSINLI 84
           RKT+F+++NLI
Sbjct: 238 RKTLFYTVNLI 248


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 52  RKTIFFSINLI 84
           RKT+F+++NLI
Sbjct: 234 RKTLFYTVNLI 244


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 52  RKTIFFSINLI 84
           RKT+F+++NLI
Sbjct: 233 RKTLFYTVNLI 243


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 52  RKTIFFSINLI 84
           RKT+F+++NLI
Sbjct: 247 RKTLFYTVNLI 257


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 182 QVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQI 295
           +VN+  +   A  I+    ++ LLTK A +    E  I
Sbjct: 640 KVNLTRVDMYANMIETMELTSLLLTKVAEDRPLPEFYI 677


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 44  NKIEKQFFFQSI*LNFYGNRIKMTSASSSSARN 142
           NKIE+      + +   GN  K  + SS+S RN
Sbjct: 187 NKIEEHDTVLVVNIKKSGNESKKYATSSNSLRN 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,406
Number of Sequences: 438
Number of extensions: 3525
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)