Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h03
(759 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41620.1 68418.m05057 expressed protein weak similarity to mi... 32 0.48
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 30 1.5
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 30 1.5
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote... 30 1.9
At3g45000.1 68416.m04848 SNF7 family protein contains Pfam profi... 29 3.4
At3g09970.1 68416.m01196 calcineurin-like phosphoesterase family... 29 3.4
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 29 4.4
At5g07970.1 68418.m00926 dentin sialophosphoprotein-related cont... 28 5.9
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 28 5.9
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p... 28 5.9
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 28 5.9
At5g46050.1 68418.m05663 proton-dependent oligopeptide transport... 28 7.7
At3g09960.1 68416.m01194 calcineurin-like phosphoesterase family... 28 7.7
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 28 7.7
>At5g41620.1 68418.m05057 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 (GI:2773363)
[Drosophila melanogaster]; weak similarity to
Synaptonemal complex protein 1 (SCP-1 protein)
(Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
DNA double-strand break repair rad50 ATPase.
(Swiss-Prot:P58301) [Pyrococcus furiosus]
Length = 543
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 161 QRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQL 331
+++A + +++S+ ++++RGSKSN+++ E A E LKK L
Sbjct: 216 RKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNL 272
>At5g07660.1 68418.m00877 structural maintenance of chromosomes
(SMC) family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 233 SKSNEL---LTKAAREMASTEHQIETSEENLKKMQLIAVHIGYQFENIHKSAK 382
S NEL + K +E+ E +E +++LK+ +L A + +EN+++SAK
Sbjct: 714 SSVNELHLEIMKFQKEIEEKESLLEKLQDSLKEAELKANELKASYENLYESAK 766
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Frame = +2
Query: 107 KMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNEL------LTKAAR 268
KM S +F E K+RL ++ MNN+ ++Q+ + EL K
Sbjct: 304 KMQELSREKINRIFRE-KERLTNELEAKMNNLKIWSKQLDKKQALTELERQKLDEDKKKS 362
Query: 269 EMASTEHQIETSEENL---KKMQLIAVHIGYQFENIHKSAKMLTEI-NEQITAMQR*EII 436
++ ++ Q+ + E+ + ++L+ H + E ++K ++ E+ ++Q M+ E+
Sbjct: 363 DVMNSSLQLASLEQKKTDDRVLRLVDEHKRKKEETLNKILQLEKELDSKQKLQMEIQELK 422
Query: 437 GKL 445
GKL
Sbjct: 423 GKL 425
>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
contains Pfam domain PF04100: Vps53-like, N-terminal
Length = 798
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/111 (21%), Positives = 52/111 (46%)
Frame = +2
Query: 92 YGNRIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAARE 271
Y N++ T AS + L + + + +V+ + +S++ +Q G+K+ E L A R
Sbjct: 9 YINQMFPTEASLTGVEPLMQKIQGEIR---RVDASILSAVRQQSNSGTKAKEDLADATRA 65
Query: 272 MASTEHQIETSEENLKKMQLIAVHIGYQFENIHKSAKMLTEINEQITAMQR 424
+ H+I+ + ++ + + I + + + K +T ITA+ R
Sbjct: 66 VEELSHKIQEIKSKAEQSEAMVQEICRDIKKLDFAKKNIT---TTITALHR 113
>At3g45000.1 68416.m04848 SNF7 family protein contains Pfam profile
PF03357: SNF7 family
Length = 200
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Frame = +2
Query: 215 RQIQRGSKSNELLT-KA-AREMASTEHQIETSEENLKKMQLIAVHIGYQFE------NIH 370
+ I+ K N+L+T KA ARE+ S+ ++ EN ++ I++H+G N+
Sbjct: 19 KAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLS 78
Query: 371 KSAKMLTEINEQITA 415
KS +++ +N + A
Sbjct: 79 KSGEVMKLVNSLMKA 93
>At3g09970.1 68416.m01196 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 Calcineurin-like
phosphoesterase
Length = 309
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 293 IETSEENLKKMQLIAVHIGYQ-FENIHKSAKMLTEINEQITAMQ 421
IET EE LK +LIAVH G + N+ + K+L + I+ +Q
Sbjct: 198 IET-EEGLKHCKLIAVHAGLEKGNNVEEQLKLLRAKDTSISKIQ 240
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/77 (22%), Positives = 31/77 (40%)
Frame = +2
Query: 101 RIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMAS 280
++K + +N + +Q RVQ S L ++ + E KA +AS
Sbjct: 412 KLKSELETVKEEKNRALKKEQDATSRVQRLSEEKSKLLSDLESSKEEEEKSKKAMESLAS 471
Query: 281 TEHQIETSEENLKKMQL 331
H++ + LK+ L
Sbjct: 472 ALHEVSSEGRELKEKLL 488
>At5g07970.1 68418.m00926 dentin sialophosphoprotein-related contains
weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1097
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 194 NNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKK 322
NN++ L+ + + S++ ++KAA + S ++ET L+K
Sbjct: 989 NNLNPLSERTETEKMSDQYISKAAEDFISRTKKLETDFAGLEK 1031
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 161 QRLAERVQVNMNNISSLARQIQR-GSKSNELLTKAAREMASTEHQ-IETSEENLKKMQLI 334
+ + + V + S+ ++ G + +E++ K S E + E E K+M+L
Sbjct: 177 ESIRNELNVTQGKLESIENDLKAAGLQESEVMEKLKSAEESLEQKGREIDEATTKRMELE 236
Query: 335 AVHIGYQFENIHKSAKMLTEINEQ 406
A+H ++ H+ K + E +
Sbjct: 237 ALHQSLSIDSEHRLQKAMEEFTSR 260
>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 909
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 285 SVDAISLAAFVNSSLDLEPL*ICLANDEILFIFTCTLSASLCLDSANKF-LALLDDAEVI 109
SV+A + + + L+PL CL D ++ +FT L L +NK+ L L +
Sbjct: 191 SVEAPPEDSLPQADISLQPLVQCLDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESIC 250
Query: 108 LILFP 94
+++P
Sbjct: 251 HLIYP 255
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 285 SVDAISLAAFVNSSLDLEPL*ICLANDEILFIFTCTLSASLCLDSANKF-LALLDDAEVI 109
SV+A + + + L+PL CL D ++ +FT L L +NK+ L L +
Sbjct: 191 SVEAPPEDSLPQADISLQPLVQCLDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESIC 250
Query: 108 LILFP 94
+++P
Sbjct: 251 HLIYP 255
>At5g46050.1 68418.m05663 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 582
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 594 LFAVGF*ILFSATELFFLMDNILCNLGFEIEYLFMTVLYKYFII 725
+F++ F LF+ T L ++ DN+ LG+ + L + + F++
Sbjct: 194 MFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLL 237
>At3g09960.1 68416.m01194 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 311
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 293 IETSEENLKKMQLIAVHIGYQFE-NIHKSAKMLTEINEQITAMQ 421
IET EE L +LIAVH G + + N+ + K+L + + I +Q
Sbjct: 200 IET-EEGLTHCKLIAVHAGLETKNNVEEQLKLLRDKDTSIPRIQ 242
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 427 SSLHSCNLFIYFCQHFCRLMNVFKLISNVD 338
S+ C F Y C C+L ++ K++S D
Sbjct: 608 SNTSMCRPFCYVCNSQCKLPSIVKVVSKAD 637
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,745
Number of Sequences: 28952
Number of extensions: 260955
Number of successful extensions: 645
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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