Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h02
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 28 0.98
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 28 1.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.0
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.2
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 6.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.9
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 25 9.1
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 28.3 bits (60), Expect = 0.98
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 260 GGFTVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSYGCGD 439
G T TST P G T + +E + I + G+V TFP+NG + +
Sbjct: 430 GSKTFTSTFPA--NGTTSGTVEVVEPTAGTITETIVSGSVGYTSTFPANGTTSGTVEVVE 487
Query: 440 GAIGIVSET 466
G ++ET
Sbjct: 488 PTAGTITET 496
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +2
Query: 260 GGFTVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSYGCGD 439
G T TST P + G T + +E + I + G+ TFP+NG + +
Sbjct: 500 GSKTFTSTFPAS--GTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVE 557
Query: 440 GAIGIVSET 466
G ++ET
Sbjct: 558 PTAGTITET 566
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 269 TVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSYGCGDGAI 448
+V TS +G T + +E + I + G+V TFP+NG + +
Sbjct: 221 SVGYTSTFPASGTTSGTVEVVEPTAGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTA 280
Query: 449 GIVSET 466
G ++ET
Sbjct: 281 GTITET 286
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 269 TVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSYGCGDGAI 448
+V TS G T + +E + I + G+V TFP+NG + +
Sbjct: 291 SVGYTSTFPANGTTSGTVEVVEPTAGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTA 350
Query: 449 GIVSET 466
G V+ET
Sbjct: 351 GTVTET 356
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 269 TVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSYGCGDGAI 448
+V TS G T + +E + I + G+V TFP+NG + +
Sbjct: 256 SVGYTSTFPANGTTSGTVEVVEPTAGTITETIVSGSVGYTSTFPANGTTSGTVEVVEPTA 315
Query: 449 GIVSET 466
G ++ET
Sbjct: 316 GTITET 321
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +2
Query: 269 TVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSYGCGDGAI 448
+V TS +G T + +E + I + G+ TFP+NG + +
Sbjct: 641 SVGYTSTFPASGTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPTA 700
Query: 449 GIVSET 466
G ++ET
Sbjct: 701 GTITET 706
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +2
Query: 260 GGFTVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSYGCGD 439
G TST P G T + +E + I + G+ TFP+NG + +
Sbjct: 675 GSKAFTSTFPA--NGTTSGTVEVVEPTAGTITETIVSGSKTFTSTFPANGTTSGTVEVVE 732
Query: 440 GAIGIVSET 466
G ++ET
Sbjct: 733 PTAGTITET 741
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.9 bits (59), Expect = 1.3
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = -3
Query: 457 DNTDSTITTAVRHQTSTIRREGAFRDHSAQERKLSNHSQRSFDGVL*RHSNAGRSNGRSA 278
+ T ST TT T T R A + S Q SN ++ ++A SNG
Sbjct: 147 NRTTSTPTTTTARTTRTTPRPTATTNTSNQST--SNSTRNG--------TSAATSNGTGT 196
Query: 277 GDSEAASTRCCQVTGSETNES 215
G AS R VT +TN +
Sbjct: 197 GAGTGASHRSSPVTNRQTNNT 217
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 465 VSETIPIAPS-PQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDPSM 328
V+ +P APS PQP P+ P V +VP+ + P+ + PS+
Sbjct: 594 VAPVVPEAPSVPQP------PVAPVAPEVPSVPQRPAVPVVPEAPSV 634
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 453 IPIAPS-PQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDPSM 328
+P APS PQP P VP V +VP+ + P+ + PS+
Sbjct: 628 VPEAPSVPQP------PAAPVVPEVPSVPQRPAVPVVPEAPSV 664
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 514 SRDPPGRLRI*GHRSGMWMWRVVLNLLLIS 603
SR+P R R R+ ++ W V+++ +++S
Sbjct: 341 SREPAARYRKISERNAVYDWNVIIDKIIVS 370
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -1
Query: 444 APSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDPSMAFSDVT 310
AP+P P P+ P+V VP P A+ P + + T
Sbjct: 1469 APAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPAT 1513
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 13 VSRVVTKQNGRQDRYLCQRLRIIV 84
+SR + +G +DRYLC+ L +++
Sbjct: 225 LSRRQNRTDGSKDRYLCKDLTVVM 248
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 271 CHQHFAHCSYRHYCDVRERHRRIFGCDWTASVPGH 375
C+ HF + + RE+H R + CD A P H
Sbjct: 250 CNTHF-YDDDELFKHCREKHERCYICDQVAGRPTH 283
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 173 CHRTVPRDHMELLDHRSVDRDPGIDL 96
CH V +H ELLD D + +DL
Sbjct: 565 CHVIVDPEHYELLDPPEEDEEDMLDL 590
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,165
Number of Sequences: 5004
Number of extensions: 47747
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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