Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h02
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0905 + 25843547-25844314 33 0.25
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 31 0.58
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148... 30 1.8
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 2.3
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810... 29 4.1
02_02_0403 - 9866122-9867231 29 4.1
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 5.4
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 28 5.4
05_07_0164 - 28099839-28099861,28100148-28100265,28100546-281007... 27 9.4
05_01_0131 + 888247-888771,889092-889154 27 9.4
>06_03_0905 + 25843547-25844314
Length = 255
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = -1
Query: 453 IPIAPSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDPSMAFSDVTVMPVGAMGEVLV 274
+P+ P+ TRP P+ P VTT P P+T P + V V P V
Sbjct: 85 VPVTHPPKGPVTRPPPVTYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPV 144
Query: 273 TVKPPP 256
T PP
Sbjct: 145 TYPTPP 150
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = -3
Query: 469 RRLGDNTDSTITTAVRHQTSTIRREGAFRDHSAQERKLSNHSQRSFDGVL*RHSNAGRSN 290
RRL D+ D R R G ++ + +R F G RHS+ GR
Sbjct: 124 RRLDDDDDGNPNPRSR------RNRGGENNNDDSSSSYNGRGKRKF-GAYSRHSDWGRDK 176
Query: 289 GRSAGDSEAAS 257
GRS G+S++ S
Sbjct: 177 GRSRGNSDSRS 187
>01_01_0172 +
1485170-1485176,1485480-1485511,1485622-1485870,
1486350-1487813,1487906-1487959
Length = 601
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = -1
Query: 459 ETIPIAPSPQP*DTRPLPLDGKVPSVTTVPRNGSCP---ITAKDPSMAFSDVTVMPVGAM 289
E + AP P P P PL+GKV P P T D + ++ VT +P M
Sbjct: 375 ELLNSAPYPFPTGAAPGPLNGKVMKFIVQPNGPLDPPDNSTVPDHEVPYASVTALPPTTM 434
Query: 288 GEVLV 274
+V
Sbjct: 435 TRYIV 439
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 371 GTVVTEGTFPSNGRGLVSYGCGDGAIGIV 457
G + + + S GRG V+ GC DG +G++
Sbjct: 21 GEIASRVSCCSGGRGRVAVGCDDGTVGLL 49
>03_05_0100 -
20779387-20779641,20779824-20780629,20780757-20781011,
20781107-20781221,20781301-20781353,20781517-20781777,
20782804-20782854,20783081-20783329,20784765-20784990,
20785968-20786132
Length = 811
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 164 TVPRDHM-ELLDHRSVDRDPGIDLQHSPTI 78
TVPRD + ELL+ R + R PG+ L ++ +
Sbjct: 546 TVPRDKVKELLERRDIQRVPGVGLFYTDLV 575
>02_02_0403 - 9866122-9867231
Length = 369
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -2
Query: 215 PQLPDLRIPDRRIRCHRTVPRD--HMELLDH--RSVDRDPGIDLQHSPT 81
P+LP +P RR R R +PRD H L H + R G HSP+
Sbjct: 313 PELPPESVPRRRRRQWRAMPRDFSHGRALVHGGHNNQRRGGAGAVHSPS 361
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = -1
Query: 444 APSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDPSM----AFSDVTVMPVGAMGEVL 277
AP PQ PLP VP+ P + P A P A D P A
Sbjct: 201 APPPQA----PLPPPAPVPAPAPPPPPAAAPAPAAQPEQRDRDAALDQFATPAPAPAPPP 256
Query: 276 VTVKPPPHDAA 244
VT PPP AA
Sbjct: 257 VTAPPPPPVAA 267
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 450 PIAPSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAK 340
P PQP +P+ + +P+ TT P S P A+
Sbjct: 108 PPPTQPQPEQQKPVTVQENLPAPTTAPARASQPAAAR 144
>05_07_0164 -
28099839-28099861,28100148-28100265,28100546-28100770,
28100843-28101015,28101292-28101385,28102957-28103048,
28103370-28103400
Length = 251
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 617 LKANLEISNKFRTTRHIHIPDRCPYIRSRP 528
L L I N+F T +H+ +CP + +RP
Sbjct: 196 LLPELRILNQFLTAHLLHLSVQCPSVSTRP 225
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = -1
Query: 465 VSETIPIAPSPQP*DTRPLPLDGKVPSVTTVPRN---GSCPITAKDPSMAFSDVTVMPVG 295
V +P P P D P P P+ +V R G PIT+ P S+ V+
Sbjct: 64 VLRKVPTGPDPITSDPPPPP-PPSTPTQFSVLRKVPTGPDPITSDPPPPPLSEFPVLREV 122
Query: 294 AMGEVLVTVKPPP 256
G +T PPP
Sbjct: 123 PSGPDPITSDPPP 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,040
Number of Sequences: 37544
Number of extensions: 403983
Number of successful extensions: 1302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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