Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h02
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19) 34 0.084
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 31 0.78
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6) 30 1.8
SB_54949| Best HMM Match : Protamine_P1 (HMM E-Value=1.5) 29 3.2
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 28 5.5
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06) 27 9.7
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 27 9.7
>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
Length = 1341
Score = 34.3 bits (75), Expect = 0.084
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 254 CGGGFTVTSTSPIAPTGITVTSE---NAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVS 424
CG F+ +P+ P G + S N+ + + P + +T G +PSNG LV+
Sbjct: 397 CGVHFSGLPPTPMEPNGFPIPSLKYFNSPQNGICPTALTPPVSPEMTSGQYPSNGHALVT 456
Query: 425 Y 427
Y
Sbjct: 457 Y 457
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 459 ETIPIAPSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDP-SMAFSDVTVMP 301
ET P+ + +T PLP P TT+P+ + P T P + A + T +P
Sbjct: 2966 ETTPLPKTTAAPETTPLPKTTAAPETTTLPKTTAAPETTTLPKTTAAPETTTLP 3019
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 459 ETIPIAPSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDP-SMAFSDVTVMP 301
ET + + +T PLP P TT+P+ + P T P + A + T +P
Sbjct: 2894 ETTAVPKTTAAPETTPLPKTTAAPETTTLPKITAAPETTAVPKTTAAPETTSVP 2947
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = +1
Query: 256 WRRLH----CHQHFAHCSYR-HYCDVRERHRRI 339
W R H C++H+ H YR HYC R RH I
Sbjct: 40 WYRHHYHYPCYRHYYHRCYRHHYCCYRHRHNFI 72
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 266 SRLHTMLPGYRERDQ*IPQLPDLRIPDRRIRCHRTVPRDHMELLDHRSVDRD-PGIDLQH 90
+RLHT P R + + R+ RR R HR PR H LD+ VD D +DL +
Sbjct: 176 TRLHTRRPRLHTRRPRLHRRRP-RLHTRRPRRHRRRPRLHRHDLDYTDVDLDYTHVDLDY 234
Query: 89 S 87
+
Sbjct: 235 T 235
>SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)
Length = 147
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -3
Query: 502 SRTDGRPWSCHRRLGDNTDSTITTAVRHQTSTIRREGAFRDHSAQERKL---SNHSQRSF 332
S+TD RP S RL + + I TAV + RE E++L S++++R
Sbjct: 74 SQTDSRPSSSSSRLSETRSNNILTAVCALVKELDRESLEEVKLEVEKRLHDCSSNAERDS 133
Query: 331 DG 326
DG
Sbjct: 134 DG 135
>SB_54949| Best HMM Match : Protamine_P1 (HMM E-Value=1.5)
Length = 107
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -3
Query: 496 TDGRPWSCHRRLGDNTDSTITTAVRHQTSTIRREGAFRDHSAQ-ERKLSNHSQRSFD--G 326
T+GR + HRR +T+ IT RH T R +R H E +++ H + D G
Sbjct: 18 TEGRI-TRHRRHDIDTEGRITRYRRHDIDTEGRITRYRRHDIDTEGRITRHRRHDIDTEG 76
Query: 325 VL*RHSNAG 299
+ RH G
Sbjct: 77 RITRHRRHG 85
>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 396 KVPSVTTVPRNGSCPITAKDPSMAFSDVTVMP---VGAMGEVLVTVKPPPHDAARL 238
K S +TVPR+GS P+++ P+ + T +P + G + + K P A L
Sbjct: 192 KTHSSSTVPRSGSPPVSSSRPAQKPTSQTALPSTEISGTGSLPKSTKSRPAPAPPL 247
>SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 414 PLPLDGKVPSVTTVPRNG 361
P P GK+P+ T+PRNG
Sbjct: 375 PSPSGGKMPAACTIPRNG 392
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 438 SPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDPSMAFSDVT 310
SP P T P PL P ++ P S P+T+ P + S +T
Sbjct: 187 SPSPL-TSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSPLT 228
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 263 GFTVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGT 394
G VT P+ P G V + ++V +LP T VT+GT
Sbjct: 1061 GTAVTQGIPVTP-GRVVMQGTVVTQGMSVTQRLPITQTAVTQGT 1103
>SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06)
Length = 768
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 265 LHCHQHFAHCSYRH 306
LHC Q FA C++RH
Sbjct: 32 LHCFQAFARCAWRH 45
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 456 TIPIAPSPQP*DTRP-LPLDGKVPSVTTVPRNGSCPITAKDPSMAFSDVT 310
T P PS + P +P D VPS TVP + + P DP++ SD T
Sbjct: 387 TGPTVPSDPTVPSDPTVPSDPTVPSDPTVPSDPTDPTVPSDPTVP-SDPT 435
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 450 PIAPS--PQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDPSMAFSDV 313
P AP PQ ++ P+P+ G PSV TVP P K+ A+S V
Sbjct: 136 PPAPPIIPQAINSMPMPMAG--PSVPTVPVPTITPAEQKEWESAYSHV 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,719
Number of Sequences: 59808
Number of extensions: 434502
Number of successful extensions: 1366
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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