Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h02
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.27 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.81 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 548 PYIRSRPGGSLDHNLVPDRRAP 483
           P  RSR  G L  NL+PD+  P
Sbjct: 180 PKSRSRKKGGLKDNLIPDKNDP 201



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 48  LAAILFGHYTRNN 10
           L +I+F HY RNN
Sbjct: 237 LVSIMFSHYDRNN 249


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 245 AASCGGGFTVTSTSPIAPTGITVTSENAIEGSLAVIGQLPFL 370
           A SCGGG T+ +T  +   GI +        + A     PFL
Sbjct: 367 APSCGGGPTILTTPGLDSDGIRLPCREVEAAATARNVVAPFL 408


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 599 ISNKFRTTRHIHIPDR 552
           + NKF+TTR++ + +R
Sbjct: 23  LENKFKTTRYLSVCER 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,130
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)