Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h02
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 31 0.48
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote... 31 0.85
At1g41855.1 68414.m04833 hypothetical protein 30 1.1
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 2.6
At5g10620.1 68418.m01229 expressed protein contains Pfam profile... 29 3.4
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 28 4.5
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ... 28 6.0
At5g44120.2 68418.m05399 12S seed storage protein (CRA1) nearly ... 28 6.0
At5g44120.1 68418.m05398 12S seed storage protein (CRA1) nearly ... 28 6.0
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 28 6.0
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu... 28 6.0
At5g42240.1 68418.m05142 serine carboxypeptidase S10 family prot... 27 7.9
At1g34590.1 68414.m04299 hypothetical protein 27 7.9
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 272 VTSTSPIAPTGITVTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSY 427
+ + AP+ +TS+ E + ++G L V + F SNG LV Y
Sbjct: 407 IVTVKRFAPSKTAITSDLEFENQMEIVGGLKHPNLVPVKAYFQSNGERLVIY 458
>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
kinase, putative
Length = 669
Score = 30.7 bits (66), Expect = 0.85
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 311 VTSENAIEGSLAVIGQLPFLGTVVTEGTFPSNGRGLVSY 427
VTSE A E + ++G L V F SNG L+ Y
Sbjct: 430 VTSEEAFENHMEIVGGLRHTNLVPIRSYFQSNGERLIIY 468
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 424 RHQTSTIRREGAFRDHSAQERKLSNHSQRSFDGVL 320
R + S +R GA DH AQ LS + + FDG+L
Sbjct: 151 RRRRSVWKRPGASPDHKAQFGPLSFYGPKMFDGML 185
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 456 TIPIAPSPQP*DTRPLPLDGKVPS--VTTVPRNGSCP 352
TIP++P P+P PLP + P+ V++ P S P
Sbjct: 89 TIPVSPPPEPSPPPPLPTEAPPPANPVSSPPPESSPP 125
>At5g10620.1 68418.m01229 expressed protein contains Pfam profile
PF02590: Uncharacterized ACR, COG1576
Length = 193
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 510 MVQGSPRSASDIRASVRDVDVA 575
+V+ +PR+A D+RA V D +VA
Sbjct: 75 LVRSNPRNAQDVRAQVEDEEVA 96
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -1
Query: 456 TIPIAPSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDPSMA 325
T P++PS P + P P+ K S +T+P + S P+T+ SMA
Sbjct: 224 TSPVSPSSAPMTSPPAPMAPK--SSSTIPPS-SAPMTSPPGSMA 264
>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 472
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 156 QGPHGAPRPPISGSRPR 106
QGP G RPP+ G RP+
Sbjct: 252 QGPFGVIRPPLRGQRPQ 268
>At5g44120.2 68418.m05399 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 368
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 156 QGPHGAPRPPISGSRPR 106
QGP G RPP+ G RP+
Sbjct: 148 QGPFGVIRPPLRGQRPQ 164
>At5g44120.1 68418.m05398 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 285
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 156 QGPHGAPRPPISGSRPR 106
QGP G RPP+ G RP+
Sbjct: 65 QGPFGVIRPPLRGQRPQ 81
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 450 PIAPSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDP 334
P +P P P PLPL G PS + P S P+ + P
Sbjct: 186 PDSPLPSPGPDSPLPLPGPPPSPSPTPGPDS-PLPSPGP 223
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 450 PIAPSPQP*DTRPLPLDGKVPSVTTVPRNGSCPITAKDP 334
P +P P P PLPL G PS + P S P+ + P
Sbjct: 214 PDSPLPSPGPDSPLPLPGPPPSSSPTPGPDS-PLPSPGP 251
>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
putative similar to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846; contains Pfam
profiles PF01426: BAH domain, PF00145: C-5
cytosine-specific DNA methylase
Length = 1404
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 19 RVVTKQNGRQDRYLCQRLRIIVGECCKSIPGSRSTDRWSRSSMWSLG 159
R TK N + R+L ++ VG+ IP S DR R ++ G
Sbjct: 771 RSKTKLNDSKTRFLSNGIKYSVGDFVYQIPNYLSKDRGKRRPVFKYG 817
>At5g42240.1 68418.m05142 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II-3 precursor
(SP:P52711) (CP-MII.3. [Hordeum vulgare]
Length = 473
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 417 WCLTAVVMVLSVLSPRRRWQLQGRPSVRD*VMVQGSPRSASDIRASVRDVDV-AGCSKFV 593
W AV MV+ +LS +W +G P V + G P A DVDV AG S F
Sbjct: 6 WRAVAVAMVVVLLS--LQWFAKGYPEEDLVVRLPGQPTVGFKQYAGYVDVDVKAGRSLFY 63
Query: 594 TY 599
Y
Sbjct: 64 YY 65
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 542 IRSRPGGSLDHNLVPDRRAPLELPPA 465
+R P S D N++PD AP++ P+
Sbjct: 477 LRDAPEASRDGNVIPDAAAPVDAAPS 502
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,468
Number of Sequences: 28952
Number of extensions: 283253
Number of successful extensions: 883
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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