Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h01
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|... 87 3e-18
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 30 0.36
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 28 1.1
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 27 2.6
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 27 3.4
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 27 3.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 4.5
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 26 4.5
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.9
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 7.8
>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 86.6 bits (205), Expect = 3e-18
Identities = 73/213 (34%), Positives = 105/213 (49%), Gaps = 5/213 (2%)
Frame = +3
Query: 36 LANIRDNPGSKITQKR-GRGQHGG--DKHGAGNKGSGQRQNY-MRLGYETGNNPFYLRIP 203
+ N +N + ++KR GRG G G G+KGSGQR+ ++ G+E G P P
Sbjct: 1 MLNDLNNSANYQSKKRVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQTPITKLFP 60
Query: 204 HENYYRGHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGLYTLNPDQKHFGVN 383
+ GH LK+ + L +Q+ IDR R+D SK I + L+ S KH GV
Sbjct: 61 KVGHSTGH-LKKPLR-LGLGRVQEWIDRGRLDASKTITMKDLLDSRCCR---GIKH-GVE 114
Query: 384 LTDDGADIFAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLFILKNPQRFFETGQA 563
LT D + I+IEV A+ Q I I+ GG ITT Y+ P +L +P F +
Sbjct: 115 LTADEPGLLKTAISIEVSKATVQAIQQIKNAGGSITTVYFSPLALRAHLHPSSF----RT 170
Query: 564 IPRRMIP-PPDAIEFYTSAATRGYLADPEKISQ 659
PR +P I +YT+ GYLA+ + I +
Sbjct: 171 PPRPPLPVSKKDIRYYTNPHFAGYLANVKNIRE 203
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 29.9 bits (64), Expect = 0.36
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 605 LHQCCNTWLFSRSRKNISRKIK 670
L +CCN +LFS ++K + +KI+
Sbjct: 122 LTECCNIYLFSENKKPVDQKIR 143
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 579 IPPPDAIEFYTSAATRGYLADPEKISQERLKL 674
+P P+ + Y A GY DP +IS+ER KL
Sbjct: 161 VPEPETKDSYGFGARYGYPTDP-RISRERAKL 191
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = +2
Query: 578 DSSARCH*ILHQC----CNTWLFSRSRKN 652
D++A +L QC CN+WL SR+ KN
Sbjct: 142 DTNASREIVLQQCAQEFCNSWLQSRAHKN 170
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 249 PMTLLELQKLIDRNRVDISKPIDIASLIK 335
P L+ +LID+NR DI+K A+LI+
Sbjct: 148 PKFLIMFPELIDKNREDIAKAAAEAALIE 176
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 521 YIEKSSKVF*NWSSYSKKNDSSARC 595
Y EKSSK + S +K +DSS+ C
Sbjct: 17 YFEKSSKSSKKYGSQNKDSDSSSTC 41
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 54 NPGSKITQKRGRGQHGGDKHGAGNKGSGQRQNYMRLGYE 170
N G I H H G+KG R NYM + YE
Sbjct: 1720 NYGFSIIDIVKHNPHSITIHFGGSKGKKIRDNYMAMAYE 1758
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 222 GHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGL 344
GH++ ++Y P+ L E + L +N+ S + L KS L
Sbjct: 51 GHYVSKDYQPINLSEWKNLTSQNQGAYSLDALVDFLAKSPL 91
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 412 LQKLI*KYSGQVNKLLQRLRKMVVLLLQPTMILTVYLY 525
LQ LI KYS +L++ + +Q +IL++Y Y
Sbjct: 290 LQSLIKKYSFYSERLVKSADNFTIESIQCLLILSIYRY 327
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 513 SLFILKNPQRFFETGQAIPRRMIPPPDAIEFYTSAATR 626
S + LKN F +GQ P +P P + + T++ R
Sbjct: 564 SKYYLKNINHMFVSGQTFPVTDVPGPHSRKVTTASKNR 601
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,610
Number of Sequences: 5004
Number of extensions: 64540
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -