Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h01
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)                    101   4e-22
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.7  
SB_14326| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   29   2.7  
SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)                   29   3.6  
SB_17468| Best HMM Match : Ycf9 (HMM E-Value=2.7)                      29   4.8  
SB_14614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     29   4.8  
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)                      28   6.3  

>SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)
          Length = 203

 Score =  101 bits (243), Expect = 4e-22
 Identities = 59/149 (39%), Positives = 85/149 (57%)
 Frame = +3

Query: 225 HHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGLYTLNPDQKHFGVNLTDDGAD 404
           H  ++ Y P+ L  LQ LID  R++  + I +  L K+G      D    GV L   G +
Sbjct: 51  HGFEKVYEPLNLNRLQYLIDSGRLNPKEQITMHELWKTGAVGKIKD----GVKLLGTGNE 106

Query: 405 IFAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLFILKNPQRFFETGQAIPRRMIP 584
            F AK++IEV  AS+  I AIE+ GG IT A+Y+   L +L  P++F   G+ IPRR  P
Sbjct: 107 WFQAKVDIEVSKASKTAIEAIERQGGKITCAHYNKLGLRVLLKPEKF--EGKPIPRRAHP 164

Query: 585 PPDAIEFYTSAATRGYLADPEKISQERLK 671
           P   + +Y+S   RGYLAD E++ + RL+
Sbjct: 165 PSKLLPYYSSVEHRGYLADAEQVEKARLE 193



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 3  LSMLRSLPRITLANIRDNPGSKIT 74
          L  L+ LPR+ L NIRD P + IT
Sbjct: 10 LDALKKLPRVALNNIRDLPEAFIT 33


>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 51  DNPGSKITQKRGRGQHGGDKHGAG 122
           DNPG + T+KRGR ++  DK  +G
Sbjct: 576 DNPGKRGTRKRGRKRNSVDKQESG 599


>SB_14326| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 450

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 491 SNNTTIFLNRCNNLFTCPL 435
           SNNTT F++RCNN    PL
Sbjct: 133 SNNTTSFIHRCNNRGISPL 151


>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
          Length = 566

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +1

Query: 358 LTKSILVLI*LMMELTYLLQKLI*KYSGQVNKLLQRLRKMVVL---LLQPTMILTVYLY* 528
           LTK +L L   ++ LT  L  L  K      KLL   +K++ L   LL  T  L + L  
Sbjct: 186 LTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKL-LSLTK 244

Query: 529 KILKGFLKLVKLFQEE*FLRPMPLNFTPVLQ 621
           K+L    KL+ L ++   L   PL+ T  LQ
Sbjct: 245 KLLSLTKKLLSLTKKPLSLTKKPLSLTKKLQ 275



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 26/87 (29%), Positives = 39/87 (44%)
 Frame = +1

Query: 358 LTKSILVLI*LMMELTYLLQKLI*KYSGQVNKLLQRLRKMVVLLLQPTMILTVYLY*KIL 537
           LTK +L L   ++ LT  L  L  K      KLL   +K++ L  +P  +       K+L
Sbjct: 362 LTKKLLSLTKKLLSLTKKLLSLTKKLQSLTKKLLSLTKKLLSLTKKPLSLTK-----KLL 416

Query: 538 KGFLKLVKLFQEE*FLRPMPLNFTPVL 618
               KL+ L ++   L   PL+ T  L
Sbjct: 417 SLTKKLLSLTKKLLSLTKKPLSLTKKL 443


>SB_17468| Best HMM Match : Ycf9 (HMM E-Value=2.7)
          Length = 426

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = +3

Query: 243 YPPMTLLELQKLIDRNRVDISKPIDIASLIKSGLYTLNPDQKHFGVNLTDDGADIFAAKI 422
           YP + LL L KLI     ++   I+ +S        L+  +  FG +      D+F    
Sbjct: 214 YPELQLLYLPKLIAGKTCNLILQIEGSSSSDLQSVFLDAGRGSFGYSTITHIPDVFGTSF 273

Query: 423 NIEVQWASEQVIAAIEKN 476
           N+ V   +E    A+  N
Sbjct: 274 NLPVNLVAEGTALAVVPN 291


>SB_14614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 363 GQDSMCITQILSSWQYQWV*ICLLGFYRSIF 271
           G+   C+  +LS W Y ++  C L FY  +F
Sbjct: 212 GRKMACMRYMLSFWGYPFIGACGLTFYAGVF 242


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 255 TLLELQ-KLIDRNRVDISKPIDIASLIKSGLYTLNPDQKHFGVNLTDDGADIFAAKINIE 431
           TL EL   +ID   V+ ++   +         T+NP+     V +TD+ A+I   K +  
Sbjct: 152 TLKELSIPIIDDKDVEPTETFTVILSSTEPTLTINPETAT--VTITDNDANIGFVKPSDS 209

Query: 432 VQWASEQVIAAIEKNG 479
           V  ++ QV+  IE+ G
Sbjct: 210 VDESAGQVVVEIERTG 225


>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 513  SLFILKNPQRFFETGQAIPRRMIPPPDAIEFYTSAATRGYLADPEKISQERLKLS 677
            S F     +RF    + I  R +P P  + F     + GY+ D    S+E +++S
Sbjct: 1690 SSFSGSTERRFLHNIEDIIVRSLPLPKLMNFKAKEVSTGYILDQVTFSEEMIQVS 1744


>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
          Length = 800

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  GRGQHGGDKHGAGNKGSG 137
           G G HGG  HG G+ G G
Sbjct: 361 GGGDHGGGDHGGGDHGDG 378



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  GRGQHGGDKHGAGNKGSG 137
           G G HGG  HG G+ G G
Sbjct: 376 GDGDHGGGDHGGGDHGGG 393



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  GRGQHGGDKHGAGNKGSG 137
           G G HGG  HG G+ G G
Sbjct: 381 GGGDHGGGDHGGGDHGGG 398



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  GRGQHGGDKHGAGNKGSG 137
           G G HGG  HG G+ G G
Sbjct: 386 GGGDHGGGDHGGGDYGDG 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,408,950
Number of Sequences: 59808
Number of extensions: 445871
Number of successful extensions: 1194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)