Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11h01
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.69 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   3.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.5  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 171 TGNNPFYLRIPHENYYRGHHLK 236
           TG  PF     H+ + R HHLK
Sbjct: 5   TGEKPFECPECHKRFTRDHHLK 26


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 388 VKLTPKCFW--SGFNVYNPDFIKLAISMGLDM 299
           +K+   C++  SG  +  PD   L + MGL M
Sbjct: 317 IKILGDCYYCISGAPIERPDHAVLCVYMGLSM 348


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 572 SWNSLTSFKKPLRIFQ 525
           SWN L   K+P+++F+
Sbjct: 432 SWNPLMQPKQPIKLFE 447


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 222 LYSNSHEEYEDKMGCFQ 172
           +Y ++ EE   K+GCF+
Sbjct: 40  MYESNSEEQMKKLGCFE 56


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 509 SQFIYIEKSSKVF*NWSSYSK 571
           S+F Y+ K +K    W SYS+
Sbjct: 530 SEFAYLGKPTKEDSEWPSYSR 550


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 PMTLLELQKLIDRNRVDISKPIDIA 323
           P T LE+QK I + + D+ + I  A
Sbjct: 157 PQTYLEIQKXIKKAKEDVIEVIQKA 181


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 509 RIIVGCSNNTTIFLNRCNNLFTCPLYFYINF 417
           +II   SN T    N  NN     LY+ IN+
Sbjct: 302 KIISSLSNKTIHNNNNYNNYNNKKLYYNINY 332


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 420 FLQQICQLHHQLN*HQNAFGQDSMCITQILSSWQYQW 310
           +LQQ  Q HHQ +  ++A  Q+       L   Q+Q+
Sbjct: 98  YLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQF 134


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 448 SLAHCTSILIFAANMSAP 395
           SL+H T  L+F  NM+ P
Sbjct: 152 SLSHTTQDLVFIWNMTDP 169


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 277 NFCNSKSVIGGYSLFK 230
           ++CNSK+  G YS  K
Sbjct: 217 DYCNSKTNTGEYSCLK 232


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 277 NFCNSKSVIGGYSLFK 230
           ++CNSK+  G YS  K
Sbjct: 217 DYCNSKTNTGEYSCLK 232


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 60  GSKITQKRGRGQHGGDKHGAGNKGSGQRQN 149
           G++    +  G    D    GN+ +G +QN
Sbjct: 472 GNRQNDNKQNGNRQNDNKQNGNRQNGNKQN 501


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 602 ILHQCCNTWLFSRSR 646
           ++  CC  W+FS S+
Sbjct: 72  LVGNCCVIWIFSTSK 86


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 602 ILHQCCNTWLFSRSR 646
           ++  CC  W+FS S+
Sbjct: 72  LVGNCCVIWIFSTSK 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,223
Number of Sequences: 438
Number of extensions: 4486
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)