Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11h01
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64670.1 68418.m08127 ribosomal protein L15 family protein 82 3e-16
At3g25920.1 68416.m03231 50S ribosomal protein L15, chloroplast ... 37 0.015
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 32 0.42
At1g12490.1 68414.m01445 F-box family protein-related contains w... 31 0.73
At5g48380.1 68418.m05978 leucine-rich repeat family protein / pr... 30 1.3
At4g30460.1 68417.m04325 glycine-rich protein 30 1.7
At3g28958.1 68416.m03619 plastocyanin-like domain-containing pro... 29 2.2
At3g03305.1 68416.m00328 calcineurin-like phosphoesterase family... 29 2.2
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 29 2.9
At1g53370.1 68414.m06050 F-box family protein contains F-box dom... 29 2.9
At4g00780.1 68417.m00108 meprin and TRAF homology domain-contain... 28 5.1
At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein... 28 5.1
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni... 28 6.8
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 28 6.8
At4g01390.1 68417.m00179 meprin and TRAF homology domain-contain... 28 6.8
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 28 6.8
At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical ... 28 6.8
At5g23600.1 68418.m02769 tRNA 2'phosphotransferase, putative con... 27 9.0
At5g05740.2 68418.m00632 peptidase M50 family protein / sterol-r... 27 9.0
At5g05740.1 68418.m00631 peptidase M50 family protein / sterol-r... 27 9.0
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 27 9.0
>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
Length = 281
Score = 82.2 bits (194), Expect = 3e-16
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Frame = +3
Query: 12 LRSLPRITLANIRDNPGSKITQKRGRGQHGGDKHGAGNKGSGQR-QNYMRLGYETGNNPF 188
+R+ ++L ++RDN K+ ++GRG G AG GQ+ + M+ G+E G P
Sbjct: 58 IRAYSLLSLNDLRDNVPRKLKTRKGRGIGSGKGKTAGRGHKGQKARGTMKFGFEGGQTPL 117
Query: 189 YLRIPHENYYRGHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGLYTLNPDQK 368
R+P + + K + P+ L ++ KLI+ ++D + I + +L G Q
Sbjct: 118 RRRLPKRGFK--NKFKLHFQPVGLGKIAKLINAGKIDSHELITMKTLKDVGAIG---KQI 172
Query: 369 HFGVNLTDDGADIFAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLFILKNPQRFF 548
GV L GAD ++ EV + + +E GG + YY+ L L P+ F
Sbjct: 173 EDGVRLMGRGADDIKWPLHFEVSRVTVRAKEVVEAAGGSVRRVYYNKLGLRALLKPEWFE 232
Query: 549 ETGQAIPRRMIPPP 590
+ G+ +P+ PPP
Sbjct: 233 KKGRLLPKAARPPP 246
>At3g25920.1 68416.m03231 50S ribosomal protein L15, chloroplast
(CL15) identical to GB:P25873 from [Arabidopsis
thaliana]
Length = 277
Score = 36.7 bits (81), Expect = 0.015
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 5/160 (3%)
Frame = +3
Query: 27 RITLANIRDNPGSKITQKR-GRGQHGGD--KHGAGNKGSGQRQ--NYMRLGYETGNNPFY 191
R L N+ PGS+ QKR GRG G G G +G R MR G+E G Y
Sbjct: 80 RFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMR-GFEGGQTALY 138
Query: 192 LRIPHENYYRGHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGLYTLNPDQKH 371
R+P G R P L K I+ + + +L + GL +NP +
Sbjct: 139 RRLPKLRGIAGG--MRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGL--INPSGRE 194
Query: 372 FGVNLTDDGADIFAAKINIEVQWASEQVIAAIEKNGGVIT 491
+ L G + K+ + + S Q +E +G +T
Sbjct: 195 RKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLT 234
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 48 RDNPGSKITQKRGRGQHGGDKHGAGNKGSGQRQNYM 155
++N +K+G G GG K GNKG G+ N M
Sbjct: 206 KENGNENGEKKKGGGGDGGGKEKTGNKGGGEGVNMM 241
>At1g12490.1 68414.m01445 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain
Length = 352
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 261 LELQKLIDRNRVDISKPIDIASLIKSGLYTLNPDQKH 371
+E ++IDR + +K ID AS I+S NPD KH
Sbjct: 28 IETMEIIDRISILPTKTIDTASAIRSREDYFNPDLKH 64
>At5g48380.1 68418.m05978 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 620
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 234 SNGVLYSNSHEEYEDKMGCFQFHNLVSYNFDVVQNLYCLHHVCHPRV 94
+NG LY H E+ + + + + L LHH C+PR+
Sbjct: 379 ANGYLYDQLHPADEESFKPLDWPSRLKIAIGTAKGLAWLHHSCNPRI 425
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 60 GSKITQKRGRGQHGGDKHGAGNKGSGQR 143
G + RGRG GG HG G G G R
Sbjct: 108 GGRSGSGRGRGSGGGGGHGGGGGGGGGR 135
>At3g28958.1 68416.m03619 plastocyanin-like domain-containing
protein contains plastocyanin-like domain Pfam:PF02298
Length = 175
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 567 PRRMIPPPDAIEFYTSAATRGYLADPEKISQE 662
P R IPPP + Y ++G+ EKIS++
Sbjct: 75 PSRSIPPPPPSKIYKVGDSKGWSVSQEKISRD 106
>At3g03305.1 68416.m00328 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 743
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 306 KPIDIASLIKSGLYTLNPDQKHFGVNLTDDGA-DIFAAKINIEVQWAS-EQVIAAIEKNG 479
+ ID +++ L +NP +LTD + D+ K+N E +W E V+ + K
Sbjct: 76 RAIDFKNIVGPALALINPSLVLITGDLTDGKSKDMLTMKLN-EDEWLEYESVMQDVVKRS 134
Query: 480 GVITTAYYD 506
G+ + +YD
Sbjct: 135 GLNKSIFYD 143
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 45 IRDNPGSKITQKRG--RGQHGGDKHGAGNKGSG 137
IR+ P K+ QK+ HGGDK+G+ + SG
Sbjct: 800 IREAPPVKVNQKQNGTHENHGGDKNGSHSSPSG 832
>At1g53370.1 68414.m06050 F-box family protein contains F-box domain
Pfam:PF00646
Length = 355
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 246 DTLFSNGVLYSNSHEEYEDKMGCFQFH-NLVSY-NFDVVQNL 127
D + NGVLYS ++ + K+ CF F VS+ N D + NL
Sbjct: 201 DAICINGVLYSEAYYQGSSKIVCFDFKIEKVSFVNIDGMCNL 242
>At4g00780.1 68417.m00108 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein contains Pfam
profile PF00917: MATH domain
Length = 299
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 632 ITTCCSTGVKFNGIGRRNHSSWNSLTSFKKPL 537
I CC GVKF+GI N + + +KPL
Sbjct: 132 IGDCCMFGVKFHGIEPANPGTAECFSLIEKPL 163
>At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 530
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 81 RGRGQHGGDKHGAGNKGSGQR 143
RGRG G G GN+G G R
Sbjct: 507 RGRGNRGRGNRGRGNRGRGNR 527
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 24 PRITLANIRDNPGSKITQKRGRGQHGGDKHGAGNKGSG 137
P I I+ + ++ RGRG G G GN+G G
Sbjct: 493 PSIKAKEIQASSTTRGRGNRGRGNRGRGNRGRGNRGRG 530
>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
subunit-related / RAB geranylgeranyltransferase alpha
subunit-related low similarity to SP|Q08602 [Rattus
norvegicus]
Length = 687
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 249 EDTLFSNGVLYSNSHEEYEDKMGCFQFHN 163
E+T+ SNGV Y + Y D M +HN
Sbjct: 463 EETMISNGVHYKEILQLYNDLMALDSWHN 491
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 378 VNLTDDGADIFAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLFILKN 533
V+ T +GA K++ V+ ++ V+ + E GV Y+ H L +L N
Sbjct: 487 VSGTHEGATGMVVKVDQHVRVFADHVVESSEVTTGVTKIGDYELHDLVLLDN 538
>At4g01390.1 68417.m00179 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 291
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 632 ITTCCSTGVKFNGIGRRNHSSWNSLTSFKKPL 537
I CC GVKF+GI + S + +KPL
Sbjct: 124 IGDCCMFGVKFHGIEPAKPGTAESFSLIEKPL 155
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 311 GFRYVYSVSIDQFL*LQKCHRRILSFQMVSSIVILMRNTKIKWVVSSFIT*SHIILTLSR 132
G RY+Y +FL ++ R + F+ S + ++ WVV +F + LTL+
Sbjct: 572 GSRYIYLEDFLRFLCEEEAERAMALFEGASESDKISKSCLKNWVVKAFRERRALALTLND 631
Query: 131 T 129
T
Sbjct: 632 T 632
>At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical to
cDNA glycine-rich protein 3 short isoform (GRP3S)
GI:4206766
Length = 116
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/60 (35%), Positives = 25/60 (41%)
Frame = +3
Query: 51 DNPGSKITQKRGRGQHGGDKHGAGNKGSGQRQNYMRLGYETGNNPFYLRIPHENYYRGHH 230
DN G + G G HG G G +G G R Y G G Y R H Y+G+H
Sbjct: 46 DNGGGRYQGGGGHGGHG----GGGYQGGGGR--YQGGGGRQGGGGSYCR--HGCCYKGYH 97
>At5g23600.1 68418.m02769 tRNA 2'phosphotransferase, putative
contains similarity to Swiss-Prot:Q12272 tRNA
2'phosphotransferase [Saccharomyces cerevisiae];
contains Pfam domain PF01885: RNA 2'-phosphotransferase,
Tpt1 / KptA family
Length = 212
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 315 DIASLIKSGLYTLNPDQKHFGVNLTDDGADIFAAKINIEV 434
++ S++ SGL +N HF L DG I + N+ V
Sbjct: 121 NLESILASGLKRMNRMHVHFSCGLPTDGEVISGVRRNVNV 160
>At5g05740.2 68418.m00632 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains Pfam PF02163:
Sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 527
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 393 DGADIFAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLFILKNPQRFFETGQAIPR 572
+G +F + + + E++ +E N G D + LF+L NP+ +PR
Sbjct: 177 EGGVLFKGNLRGKPATSYEKIKTRMENNFG-------DQYKLFLLTNPEDDKPVAVVVPR 229
Query: 573 RMI-PPPDAIEFYTSAATRGYLA 638
R + P A+ + +A + G +A
Sbjct: 230 RSLEPETTAVPEWFAAGSFGLVA 252
>At5g05740.1 68418.m00631 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains Pfam PF02163:
Sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 556
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 393 DGADIFAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLFILKNPQRFFETGQAIPR 572
+G +F + + + E++ +E N G D + LF+L NP+ +PR
Sbjct: 206 EGGVLFKGNLRGKPATSYEKIKTRMENNFG-------DQYKLFLLTNPEDDKPVAVVVPR 258
Query: 573 RMI-PPPDAIEFYTSAATRGYLA 638
R + P A+ + +A + G +A
Sbjct: 259 RSLEPETTAVPEWFAAGSFGLVA 281
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 546 FETGQAIPRRMIPPPDAIEFYTSAATRGYLADPEKISQER 665
F G+ P PPP +E+Y S T+ L++ + S E+
Sbjct: 322 FAGGEFHPPPPPPPPPPVEYYKSPPTKFRLSNERRKSSEQ 361
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,538
Number of Sequences: 28952
Number of extensions: 329936
Number of successful extensions: 1144
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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