Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g24
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.96 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.9  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 267 FPSPFAASYPHEETVNK 317
           FP  F  SYP EE +N+
Sbjct: 312 FPIKFVPSYPFEEDINE 328


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 229 YQPQQLHRNTKLHFRAPS 282
           +QP  +H+ T + FR P+
Sbjct: 273 FQPVHVHKQTAIAFRTPT 290


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 229 YQPQQLHRNTKLHFRAPS 282
           +QP  +H+ T + FR P+
Sbjct: 273 FQPVHVHKQTAIAFRTPT 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,299
Number of Sequences: 438
Number of extensions: 4485
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)