Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11g23
(677 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 266 3e-70
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 238 1e-61
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 190 2e-47
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 184 2e-45
UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole... 179 7e-44
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 166 4e-40
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 163 4e-39
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 155 9e-37
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 153 4e-36
UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1; ... 146 3e-34
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 144 1e-33
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 144 1e-33
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 144 2e-33
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 143 3e-33
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 141 1e-32
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 138 9e-32
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 138 1e-31
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 136 6e-31
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 134 2e-30
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 134 2e-30
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 133 3e-30
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 133 4e-30
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 133 4e-30
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 132 1e-29
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 131 1e-29
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 131 2e-29
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 130 3e-29
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 129 5e-29
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 129 5e-29
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 128 9e-29
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 128 9e-29
UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor 4... 128 9e-29
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 128 1e-28
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 128 1e-28
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 128 1e-28
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 128 1e-28
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 128 2e-28
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 128 2e-28
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 128 2e-28
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 127 2e-28
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 126 4e-28
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 126 4e-28
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 126 5e-28
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 125 9e-28
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 125 9e-28
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 125 1e-27
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 124 2e-27
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 124 2e-27
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 124 2e-27
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 124 3e-27
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 123 3e-27
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 123 5e-27
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 123 5e-27
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 122 6e-27
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 122 6e-27
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 122 6e-27
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 122 6e-27
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 122 6e-27
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 122 8e-27
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 122 8e-27
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 122 8e-27
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 122 8e-27
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 122 1e-26
UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1; ... 122 1e-26
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 122 1e-26
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 121 1e-26
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 121 1e-26
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 121 1e-26
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 121 1e-26
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 121 1e-26
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 121 2e-26
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 121 2e-26
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 121 2e-26
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F... 121 2e-26
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 120 2e-26
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 120 2e-26
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 120 3e-26
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 120 3e-26
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 120 4e-26
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 119 6e-26
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 119 6e-26
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 119 8e-26
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 119 8e-26
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 119 8e-26
UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia intest... 119 8e-26
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 119 8e-26
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 118 1e-25
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 118 1e-25
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 118 2e-25
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 118 2e-25
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 117 2e-25
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 117 2e-25
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 117 2e-25
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 117 2e-25
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 117 2e-25
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 117 2e-25
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 117 3e-25
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 117 3e-25
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 117 3e-25
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 117 3e-25
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 116 4e-25
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 116 4e-25
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 116 4e-25
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 116 4e-25
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 116 5e-25
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 116 5e-25
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 116 5e-25
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 116 5e-25
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 116 5e-25
UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7; A... 116 5e-25
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 116 7e-25
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 116 7e-25
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 116 7e-25
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 116 7e-25
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 116 7e-25
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 115 9e-25
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 115 9e-25
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 115 9e-25
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 115 1e-24
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 115 1e-24
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 114 2e-24
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 114 2e-24
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 114 2e-24
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 114 2e-24
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 114 2e-24
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 114 2e-24
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 114 2e-24
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 114 2e-24
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 114 2e-24
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 114 2e-24
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 114 2e-24
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 113 3e-24
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 113 4e-24
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 113 4e-24
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 113 4e-24
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 113 4e-24
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 113 5e-24
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 113 5e-24
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 113 5e-24
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 113 5e-24
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 112 7e-24
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 112 7e-24
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 112 7e-24
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 112 7e-24
UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyosteli... 112 7e-24
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 112 9e-24
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 111 1e-23
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 111 1e-23
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 111 1e-23
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 111 1e-23
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 111 2e-23
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 111 2e-23
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 111 2e-23
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 111 2e-23
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 111 2e-23
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 111 2e-23
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 111 2e-23
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 111 2e-23
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 111 2e-23
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 111 2e-23
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 110 3e-23
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 110 3e-23
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 110 3e-23
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 110 3e-23
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 110 3e-23
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 110 3e-23
UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein; ... 110 3e-23
UniRef50_Q4S6B9 Cluster: Chromosome 9 SCAF14729, whole genome sh... 109 5e-23
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 109 5e-23
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 109 5e-23
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 109 5e-23
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 109 6e-23
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 109 6e-23
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 109 6e-23
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 109 8e-23
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 109 8e-23
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 109 8e-23
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 109 8e-23
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 109 8e-23
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 109 8e-23
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 108 1e-22
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 108 1e-22
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 108 1e-22
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 108 1e-22
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 108 1e-22
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 108 1e-22
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 108 1e-22
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 107 2e-22
UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2; Ostreo... 107 2e-22
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 107 2e-22
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 107 2e-22
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 107 2e-22
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 107 3e-22
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 107 3e-22
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 107 3e-22
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 107 3e-22
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 107 3e-22
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 107 3e-22
UniRef50_Q8SSD2 Cluster: ATP-DEPENDENT RNA HELICASE INVOLVED IN ... 107 3e-22
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 107 3e-22
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 106 4e-22
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 106 4e-22
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 106 4e-22
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 106 4e-22
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 106 4e-22
UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111... 106 4e-22
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 106 4e-22
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 106 6e-22
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 106 6e-22
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 106 6e-22
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 105 7e-22
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 105 7e-22
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 105 7e-22
UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein; ... 105 7e-22
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 105 1e-21
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 105 1e-21
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 105 1e-21
UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;... 105 1e-21
UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;... 105 1e-21
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 105 1e-21
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 105 1e-21
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 105 1e-21
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 105 1e-21
UniRef50_A7U5W6 Cluster: DEAD-box helicase 1; n=8; Aconoidasida|... 105 1e-21
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 104 2e-21
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 104 2e-21
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 104 2e-21
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 104 2e-21
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 104 2e-21
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 104 2e-21
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 104 2e-21
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 104 2e-21
UniRef50_Q1I3W1 Cluster: ATP-dependent RNA helicase RhlE, DEAD b... 104 2e-21
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 104 2e-21
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 104 2e-21
UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box fa... 104 2e-21
UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep... 104 2e-21
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 103 3e-21
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 103 3e-21
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 103 3e-21
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 103 3e-21
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 103 3e-21
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 103 3e-21
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 103 4e-21
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 103 4e-21
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 103 4e-21
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 103 4e-21
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 103 4e-21
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 103 5e-21
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 103 5e-21
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 103 5e-21
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 103 5e-21
UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 103 5e-21
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 103 5e-21
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 103 5e-21
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 103 5e-21
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 102 7e-21
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 102 7e-21
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 102 7e-21
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 102 7e-21
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 102 9e-21
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 102 9e-21
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 102 9e-21
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 102 9e-21
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 102 9e-21
UniRef50_Q2PZC2 Cluster: Vasa protein; n=3; Apidae|Rep: Vasa pro... 102 9e-21
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 102 9e-21
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 102 9e-21
UniRef50_UPI00015B61D8 Cluster: PREDICTED: similar to vasa-like ... 101 1e-20
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 101 1e-20
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 101 1e-20
UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma j... 101 1e-20
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 101 1e-20
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 101 1e-20
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 101 2e-20
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 101 2e-20
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 101 2e-20
UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1; ... 101 2e-20
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 101 2e-20
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 101 2e-20
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 101 2e-20
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 101 2e-20
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 101 2e-20
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 101 2e-20
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 101 2e-20
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 101 2e-20
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 100 3e-20
UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1; Ent... 100 3e-20
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 100 3e-20
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 100 3e-20
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 100 3e-20
UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia ... 100 3e-20
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 100 3e-20
UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;... 100 3e-20
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 100 4e-20
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 100 4e-20
UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=... 100 4e-20
UniRef50_A5K9H3 Cluster: Pre-mRNA splicing factor RNA helicase P... 100 4e-20
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 100 4e-20
UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1; ... 100 4e-20
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 100 4e-20
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 99 5e-20
UniRef50_Q9KNA4 Cluster: ATP-dependent RNA helicase, DEAD box fa... 99 5e-20
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 99 5e-20
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 99 5e-20
UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2; ... 99 5e-20
UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6; Plasmodiu... 99 5e-20
UniRef50_Q388E8 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 99 5e-20
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 99 5e-20
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 99 5e-20
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 99 5e-20
UniRef50_Q9Y7T7 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 99 5e-20
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 100 6e-20
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 100 6e-20
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 100 6e-20
UniRef50_Q3ZDP1 Cluster: Vasa-like protein; n=7; Neoptera|Rep: V... 100 6e-20
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 100 6e-20
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 99 9e-20
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 99 9e-20
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 99 9e-20
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 99 9e-20
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 99 1e-19
UniRef50_A7CSF3 Cluster: DEAD/DEAH box helicase domain protein; ... 99 1e-19
UniRef50_Q4JG17 Cluster: Vasa-like protein; n=1; Litopenaeus van... 99 1e-19
UniRef50_Q16JA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 99 1e-19
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 99 1e-19
UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 99 1e-19
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 99 1e-19
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 98 1e-19
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 98 1e-19
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 98 1e-19
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 98 1e-19
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 98 1e-19
UniRef50_Q4Y0X7 Cluster: DEAD-box RNA helicase, putative; n=2; P... 98 1e-19
UniRef50_A7APE7 Cluster: DEAD/DEAH box helicase domain containin... 98 1e-19
UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 98 1e-19
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 98 2e-19
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 98 2e-19
UniRef50_A5DU73 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 98 2e-19
UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellu... 97 3e-19
UniRef50_Q836U7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 97 3e-19
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 97 3e-19
UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3; Sphingo... 97 3e-19
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 97 3e-19
UniRef50_A4EAF2 Cluster: Putative uncharacterized protein; n=1; ... 97 3e-19
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 97 3e-19
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 97 3e-19
UniRef50_A0EIJ0 Cluster: Chromosome undetermined scaffold_99, wh... 97 3e-19
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 97 3e-19
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 97 3e-19
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 97 3e-19
UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, wh... 97 3e-19
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 97 5e-19
UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=... 97 5e-19
UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein; ... 97 5e-19
UniRef50_A4AFV6 Cluster: ATP-dependent RNA helicase; n=3; Actino... 97 5e-19
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 97 5e-19
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 97 5e-19
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 97 5e-19
UniRef50_Q238V7 Cluster: Type III restriction enzyme, res subuni... 97 5e-19
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 97 5e-19
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 97 5e-19
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 97 5e-19
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 97 5e-19
UniRef50_O54116 Cluster: Probable DEAD-box RNA helicase; n=10; S... 96 6e-19
UniRef50_A7SE71 Cluster: Predicted protein; n=1; Nematostella ve... 96 6e-19
UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1; ... 96 6e-19
UniRef50_Q03532 Cluster: ATP-dependent RNA helicase HAS1; n=70; ... 96 6e-19
UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;... 96 6e-19
UniRef50_Q0UMB6 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 96 6e-19
UniRef50_UPI0001555979 Cluster: PREDICTED: similar to ATP-depend... 96 8e-19
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 96 8e-19
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 96 8e-19
UniRef50_Q4UA43 Cluster: DEAD-family helicase, putative; n=3; Pi... 96 8e-19
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 96 8e-19
UniRef50_A2EQ41 Cluster: DEAD/DEAH box helicase family protein; ... 96 8e-19
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 96 8e-19
UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 96 8e-19
UniRef50_O74393 Cluster: ATP-dependent RNA helicase mak5; n=1; S... 96 8e-19
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 95 1e-18
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 95 1e-18
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 95 1e-18
UniRef50_Q4W7T7 Cluster: VASA RNA helicase; n=3; Daphniidae|Rep:... 95 1e-18
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 95 1e-18
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 95 1e-18
UniRef50_A0BDD2 Cluster: Chromosome undetermined scaffold_100, w... 95 1e-18
UniRef50_P21507 Cluster: ATP-dependent RNA helicase srmB; n=82; ... 95 1e-18
UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4; F... 95 1e-18
UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;... 95 1e-18
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 95 1e-18
UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1; F... 95 1e-18
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 95 1e-18
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 95 1e-18
UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5; Ent... 95 2e-18
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase... 95 2e-18
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 95 2e-18
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 95 2e-18
UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2; G... 95 2e-18
UniRef50_Q4IBS2 Cluster: ATP-dependent RNA helicase MAK5; n=2; S... 95 2e-18
UniRef50_Q8D3Y6 Cluster: ATP-dependent RNA helicase, DEAD box fa... 94 2e-18
UniRef50_Q014Y7 Cluster: RNA helicase-like protein; n=2; Ostreoc... 94 2e-18
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 94 3e-18
UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2; ... 94 3e-18
UniRef50_Q675R0 Cluster: ATP-dependent 61 kDa nucleolar RNA heli... 94 3e-18
UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2; ... 94 3e-18
UniRef50_Q9C551 Cluster: DEAD-box ATP-dependent RNA helicase 5; ... 94 3e-18
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 94 3e-18
UniRef50_A4R5B8 Cluster: ATP-dependent RNA helicase DBP10; n=2; ... 94 3e-18
UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=... 93 4e-18
UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2; ... 93 4e-18
UniRef50_Q4MYL1 Cluster: ATP-dependent RNA helicase, putative; n... 93 4e-18
UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1; ... 93 4e-18
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 93 4e-18
UniRef50_Q88XN5 Cluster: ATP-dependent RNA helicase; n=2; Lactob... 93 6e-18
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 93 6e-18
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 93 6e-18
UniRef50_Q5CX71 Cluster: Hca4p helicase DBP4 (Helicase CA4). EIF... 93 6e-18
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 93 6e-18
UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Re... 93 6e-18
UniRef50_Q53FI9 Cluster: Nucleolar protein GU2 variant; n=3; Eut... 93 6e-18
UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1; U... 93 6e-18
UniRef50_UPI0000498D2C Cluster: DEAD/DEAH box helicase; n=3; Ent... 93 7e-18
UniRef50_Q5FLW7 Cluster: RNA helicase; n=9; Lactobacillus|Rep: R... 93 7e-18
UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein; ... 93 7e-18
UniRef50_A0LD66 Cluster: DEAD/DEAH box helicase domain protein; ... 93 7e-18
UniRef50_Q16T16 Cluster: DEAD box ATP-dependent RNA helicase; n=... 93 7e-18
UniRef50_A2E5C2 Cluster: DEAD/DEAH box helicase family protein; ... 93 7e-18
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 93 7e-18
UniRef50_O00571 Cluster: ATP-dependent RNA helicase DDX3X; n=74;... 93 7e-18
UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helic... 92 1e-17
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 92 1e-17
UniRef50_A5BHG9 Cluster: Putative uncharacterized protein; n=1; ... 92 1e-17
UniRef50_A4RW46 Cluster: Predicted protein; n=2; Ostreococcus|Re... 92 1e-17
UniRef50_Q54CD8 Cluster: Putative RNA helicase; n=2; Dictyosteli... 92 1e-17
UniRef50_Q4JF01 Cluster: Vasa homlogue; n=2; Eukaryota|Rep: Vasa... 92 1e-17
UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=... 92 1e-17
UniRef50_P09052 Cluster: ATP-dependent RNA helicase vasa; n=5; E... 92 1e-17
UniRef50_A4RK80 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 92 1e-17
UniRef50_Q9NQI0 Cluster: Probable ATP-dependent RNA helicase DDX... 92 1e-17
UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=... 92 1e-17
UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=... 92 1e-17
UniRef50_Q4W7T8 Cluster: VASA RNA helicase; n=1; Artemia francis... 92 1e-17
UniRef50_UPI0000499ECF Cluster: DEAD/DEAH box helicase; n=1; Ent... 91 2e-17
UniRef50_Q92AT6 Cluster: Lin1833 protein; n=13; Listeria|Rep: Li... 91 2e-17
UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2; Corynebacte... 91 2e-17
UniRef50_A6FEC9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 91 2e-17
UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 91 2e-17
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 91 2e-17
UniRef50_Q6KZC2 Cluster: ATP-dependent RNA helicase; n=1; Picrop... 91 2e-17
UniRef50_Q5VRY0 Cluster: DEAD-box ATP-dependent RNA helicase 39;... 91 2e-17
UniRef50_Q6C7X8 Cluster: ATP-dependent RNA helicase DBP10; n=3; ... 91 2e-17
UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box A... 91 2e-17
UniRef50_A6DML6 Cluster: ATP-dependent RNA helicase; n=1; Lentis... 91 2e-17
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 91 2e-17
UniRef50_Q6C024 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 91 2e-17
UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51; Euteleo... 91 2e-17
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 91 3e-17
UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep: ... 91 3e-17
UniRef50_Q8SR49 Cluster: ATP-dependent rRNA helicase SPB4; n=1; ... 91 3e-17
UniRef50_Q1DMX8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 91 3e-17
UniRef50_UPI00004988F8 Cluster: DEAD/DEAH box helicase; n=1; Ent... 90 4e-17
UniRef50_Q6KI10 Cluster: DEAD-box ATP-dependent RNA helicase; n=... 90 4e-17
UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1; ... 90 4e-17
UniRef50_A7RKF5 Cluster: Predicted protein; n=1; Nematostella ve... 90 4e-17
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 90 4e-17
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 90 4e-17
UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter ... 90 5e-17
UniRef50_Q03GJ4 Cluster: Superfamily II DNA and RNA helicase; n=... 90 5e-17
UniRef50_A4S6M9 Cluster: Predicted protein; n=3; Ostreococcus|Re... 90 5e-17
UniRef50_Q9GNP1 Cluster: Vasa homolog; n=18; Eumetazoa|Rep: Vasa... 90 5e-17
UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma j... 90 5e-17
UniRef50_A2DSJ0 Cluster: DEAD/DEAH box helicase family protein; ... 90 5e-17
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 90 5e-17
UniRef50_Q9V3C0 Cluster: ATP-dependent RNA helicase abstrakt; n=... 90 5e-17
UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2; ... 89 7e-17
UniRef50_UPI00004994C0 Cluster: DEAD/DEAH box helicase; n=2; Ent... 89 7e-17
UniRef50_Q4RK69 Cluster: Chromosome 2 SCAF15032, whole genome sh... 89 7e-17
UniRef50_A7QRK7 Cluster: Chromosome undetermined scaffold_151, w... 89 7e-17
UniRef50_Q7K4L8 Cluster: LD33749p; n=1; Drosophila melanogaster|... 89 7e-17
UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG136... 89 7e-17
UniRef50_Q97WT0 Cluster: ATP-dependent RNA helicase; n=4; Sulfol... 89 7e-17
UniRef50_A3H9E9 Cluster: DEAD/DEAH box helicase-like; n=1; Caldi... 89 7e-17
UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87; ... 89 7e-17
UniRef50_A5DPU0 Cluster: ATP-dependent RNA helicase MAK5; n=1; P... 89 7e-17
UniRef50_Q0UZ59 Cluster: ATP-dependent RNA helicase DBP9; n=1; P... 89 7e-17
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 89 7e-17
UniRef50_UPI00015609AE Cluster: PREDICTED: similar to DEAD (Asp-... 89 9e-17
UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family pr... 89 9e-17
UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep... 89 9e-17
UniRef50_Q2Z064 Cluster: Probable ATP-dependent RNA helicase; n=... 89 9e-17
UniRef50_Q9SWV9 Cluster: Ethylene-responsive RNA helicase; n=5; ... 89 9e-17
UniRef50_A7P4J7 Cluster: Chromosome chr4 scaffold_6, whole genom... 89 9e-17
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 89 9e-17
UniRef50_O17157 Cluster: Putative uncharacterized protein; n=3; ... 89 9e-17
UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein; ... 89 9e-17
UniRef50_Q2GSC7 Cluster: Putative uncharacterized protein; n=6; ... 89 9e-17
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 89 9e-17
UniRef50_Q0U6X2 Cluster: ATP-dependent RNA helicase MAK5; n=2; P... 89 9e-17
UniRef50_Q5KC99 Cluster: ATP-dependent RNA helicase MAK5; n=2; F... 89 9e-17
UniRef50_Q6MHS8 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 89 1e-16
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 266 bits (652), Expect = 3e-70
Identities = 125/185 (67%), Positives = 156/185 (84%), Gaps = 3/185 (1%)
Frame = +2
Query: 89 NGPSKDQG-SYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQ 262
+G S D + GP GMDP G ++++W+++V+ FDDMNLKE LLRGIYAYGFEKPSAIQQ
Sbjct: 2 SGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQ 61
Query: 263 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 442
RAI+PCI+G DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQIQKV+
Sbjct: 62 RAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVI 121
Query: 443 IALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRVYDMITRRALHANTIKLFV 619
+ALGD++ A CHACIGGTNVR ++++L++ H+VVGTPGRV+DM+ RR L IK+FV
Sbjct: 122 LALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 181
Query: 620 LDEAD 634
LDEAD
Sbjct: 182 LDEAD 186
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 238 bits (582), Expect = 1e-61
Identities = 114/155 (73%), Positives = 131/155 (84%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI I+GRDVIAQ+QSGTGKTATFSIS
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 95
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+LQ +D +RE QALILAPTRELA QIQK ++ALGD++N +CHACIGGTNV EDIR+L+
Sbjct: 96 VLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G HVV GTPGRV+DMI RR+L IK+ VLDEAD
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 190
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 190 bits (464), Expect = 2e-47
Identities = 89/170 (52%), Positives = 124/170 (72%)
Frame = +2
Query: 149 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 328
L +W + VETF+D+ L ++LLRGI++YGFE+PSAIQQ+AI P I G+DV+AQAQSGTGK
Sbjct: 47 LQENWIEQVETFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGK 106
Query: 329 TATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
T TF+I LQ+ID + R+ Q +ILAP RELA+QI VV +G +LN + CIGGT+ +E
Sbjct: 107 TGTFTIGALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQE 166
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQRXS 658
+ + GVH+++ TPGR+ DM+ + L A ++L V+DEAD + Q S
Sbjct: 167 TREKCKQGVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFS 216
>UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 48;
n=5; Fungi/Metazoa group|Rep: DEAD (Asp-Glu-Ala-Asp) box
polypeptide 48 - Mus musculus (Mouse)
Length = 299
Score = 184 bits (448), Expect = 2e-45
Identities = 97/155 (62%), Positives = 114/155 (73%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI I+GRDVIAQ+QSGTGKTATFS+S
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVS 95
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+LQ +D IQ ++ALGD++N +CHACIGGTNV EDIR+L+
Sbjct: 96 VLQCLD--------------------IQG-LLALGDYMNVQCHACIGGTNVGEDIRKLDY 134
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G HVV GTPGRV+DMI RR+L IK+ VLDEAD
Sbjct: 135 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 169
>UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole
genome shotgun sequence; n=2; Euteleostomi|Rep:
Chromosome undetermined SCAF9757, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 179 bits (435), Expect = 7e-44
Identities = 85/108 (78%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
Frame = +2
Query: 119 DGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 295
+GP GMDP G ++T+WD VV+ FDDMNLKE LLRG+YAYGFEKPSAIQQRAI+PCI+G D
Sbjct: 10 NGPEGMDPDGVIETNWDTVVDNFDDMNLKESLLRGVYAYGFEKPSAIQQRAILPCIKGHD 69
Query: 296 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 439
VIAQAQSGTGKTATF ISILQ+IDTS++E QALILAPTRELAQQ K+
Sbjct: 70 VIAQAQSGTGKTATFVISILQRIDTSLKETQALILAPTRELAQQEWKL 117
>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
SCAF14542, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 366
Score = 166 bits (404), Expect = 4e-40
Identities = 80/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Frame = +2
Query: 98 SKDQGSYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIM 274
SKD G GP GM+P G ++++W ++ + FDDMNLKE LLRGIYAYGFEKPSAIQQRAI+
Sbjct: 11 SKDHG---GPDGMEPDGIIESNWTEITDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII 67
Query: 275 PCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 427
PCI+G DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQ
Sbjct: 68 PCIKGYDVIAQAQSGTGKTATFAISILQQLEIDQKETQALVLAPTRELAQQ 118
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 163 bits (396), Expect = 4e-39
Identities = 77/152 (50%), Positives = 103/152 (67%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF+D LK ELL GI+ GFEKPS IQ+ AI I GRD++A+A++GTGKTA F I L+
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
++ + + QALI+ PTRELA Q +VV LG H C GGTN+R+DI +L VH
Sbjct: 107 KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 166
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++VGTPGRV D+ +R+ + LF++DEAD
Sbjct: 167 ILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 198
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 155 bits (376), Expect = 9e-37
Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Frame = +2
Query: 107 QGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 286
QG P + P T D Q F+D L+ ELL GIY GFE+PS IQ++AI +
Sbjct: 14 QGLAAPPKDLRPQTEDVTATQG-SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALT 72
Query: 287 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 463
GRD++A+A++GTGKTA+F I L +I+TS+ QALIL PTRELA Q +V LG H+
Sbjct: 73 GRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP 132
Query: 464 NAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
N + GGT +R+DI +L+ VH++VGTPGR+ D+ ++ N +FV+DEAD
Sbjct: 133 NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEAD 189
>UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 395
Score = 153 bits (371), Expect = 4e-36
Identities = 68/159 (42%), Positives = 108/159 (67%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
+ TF+ M L++ELLRGI A+GF +P +QQRA++P IQGRDV+ Q TGKT S+S
Sbjct: 20 IQSTFESMKLRKELLRGINAFGFIRPLEVQQRALVPLIQGRDVVIQNFRSTGKTTVMSLS 79
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+L D S+++ Q LIL TR+L ++ +++ALG LN HAC G ++++DI ++
Sbjct: 80 VLSIFDLSVKKIQVLILQKTRKLTEENAGLIMALGKFLNVSIHACSEGNSIQDDISVVQQ 139
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVV 646
GV +V+GTP RV++++ R+ + +K+ +LDEAD ++
Sbjct: 140 GVQIVLGTPDRVFELVQRKEISFAHLKMIILDEADEMLI 178
>UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 377
Score = 147 bits (355), Expect = 3e-34
Identities = 65/108 (60%), Positives = 88/108 (81%)
Frame = +2
Query: 155 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 334
T+ +++ +FD M +K +LLRGIYAY FEKPSA+QQRA++P IQG DVIAQAQSGTGKT+
Sbjct: 269 TEGVELIMSFDQMGIKNDLLRGIYAYSFEKPSAVQQRAVLPIIQGHDVIAQAQSGTGKTS 328
Query: 335 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 478
F++++ Q +DTS RE QALI +PTRELA Q +KV++A+GD +N + H
Sbjct: 329 MFALTVYQMVDTSNREVQALISSPTRELASQTEKVILAIGDSVNIQAH 376
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 144 bits (350), Expect = 1e-33
Identities = 70/152 (46%), Positives = 99/152 (65%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF D+ L E++L+ + GFE+PS IQ +AI +QG+DVI QAQ+GTGKTA F + I++
Sbjct: 7 TFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIVE 66
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
++ R QAL+L PTRELA Q+ + + +G H K A GG ++ IR L GV
Sbjct: 67 RLVPGQRAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLRFGVD 126
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VV+GTPGR+ D + R L + +++ VLDEAD
Sbjct: 127 VVIGTPGRILDHLGRSTLDLSQVRMVVLDEAD 158
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 144 bits (350), Expect = 1e-33
Identities = 78/161 (48%), Positives = 101/161 (62%)
Frame = +2
Query: 152 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 331
D+ ++ +T++D LKE+LL+GIY+ GFE PS IQ+ AI P I GRD+ AQAQSGTGKT
Sbjct: 30 DSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKT 89
Query: 332 ATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 511
F+++ LQ D S Q L+LA TRE+A Q LG + A+ GG+ + D
Sbjct: 90 GAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAAD 149
Query: 512 IRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
LE H+VVGTPGRV MI L + IKLFV+DEAD
Sbjct: 150 KVALEKKPHIVVGTPGRVEHMININELSMDNIKLFVIDEAD 190
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 144 bits (348), Expect = 2e-33
Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
VE+F D+ L+EELL+ I GF +PS IQ AI ++GRDVI QAQ+GTGKTA F + +
Sbjct: 4 VESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPL 63
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLES 529
LQ+ID + R QAL+L PTRELA Q+ + AL HL + + GG + L
Sbjct: 64 LQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRR 123
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G VVVGTPGR+ D I R L +++ VLDEAD
Sbjct: 124 GAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEAD 158
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 143 bits (347), Expect = 3e-33
Identities = 75/153 (49%), Positives = 99/153 (64%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
FDD+ LKE LL+ I GFE+PS IQ +I ++G D+I QAQ+GTGKTA F +I+
Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65
Query: 362 IDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
D S ++ +ALILAPTRELA Q+ + ++ LG H GG + IR L++GV
Sbjct: 66 ADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNGV 125
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGRV D+I R++L N I VLDEAD
Sbjct: 126 DIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEAD 158
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 141 bits (342), Expect = 1e-32
Identities = 66/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+D LK ELL GI+ G+EKPS IQ+ +I + GRD++A+A++GTGK+ + I +L++
Sbjct: 91 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPMLER 150
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVH 538
ID QAL+L PTRELA Q+ ++ I + HL K A GGTN+R+DI +L+ VH
Sbjct: 151 IDLKKDHIQALVLVPTRELALQVSQISIQIAKHLGGVKVMATTGGTNLRDDIMRLDETVH 210
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDE 628
VV+ TPGR+ D++ + + +++ V+DE
Sbjct: 211 VVIATPGRILDLMKKGVAKVDKVQIMVMDE 240
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 138 bits (335), Expect = 9e-32
Identities = 67/151 (44%), Positives = 96/151 (63%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F MN+K E+L+ + GFEKP+ IQ+ + +G+D+I QAQ+GTGKTA F+I IL
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSN 62
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
+D SI Q L++APTRELA QI + LG + +K +GG + + L SGV++
Sbjct: 63 LDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAALNSGVNI 122
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VV TPGR+ D++ + + + IK F LDEAD
Sbjct: 123 VVATPGRLEDLLAQNKIDLSHIKTFTLDEAD 153
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 138 bits (334), Expect = 1e-31
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSIS 349
+E+F ++ L +E+L + GF P+ IQ++AI I+G RD++ QAQ+GTGKTA F I
Sbjct: 1 MESFKNLGLSDEILEALEKKGFTTPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
IL+ ID S R QALILAPTRELA Q+ + + ++ GG ++ IR+L
Sbjct: 61 ILETIDESSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR 120
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV +VVGTPGR+ D I+RR + + VLDEAD
Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEAD 155
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 136 bits (328), Expect = 6e-31
Identities = 61/152 (40%), Positives = 94/152 (61%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF ++ L + LL+ + + GFE+ + IQ I +QG+D+I QAQ+GTGKTA F + +L
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
++DT Q +++APTRELA Q+ + + +G H + GG ++ IR L+ H
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++VGTPGR+ D I R+ L ++ VLDEAD
Sbjct: 123 IIVGTPGRILDHINRKTLRLQNVETVVLDEAD 154
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 134 bits (324), Expect = 2e-30
Identities = 64/152 (42%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+D LK ELL GI+ G+E PS+IQ+ +I + GRD++A+A++GTGK+ + I +L++
Sbjct: 84 FEDYCLKRELLIGIFEMGWE-PSSIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 142
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVH 538
+D QA+++ PTRELA Q+ ++ I + H+ AK A GGTN+R+D+ +L+ H
Sbjct: 143 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDVMRLDDTGH 202
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VV+ TPGR+ D+I + + +++ VLDEAD
Sbjct: 203 VVIATPGRILDLIKKCLEKVDHVQMVVLDEAD 234
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 134 bits (323), Expect = 2e-30
Identities = 66/152 (43%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ L +L + GF P+ IQ AI ++GRD + +AQ+GTGKTA FS+ +L +
Sbjct: 28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 538
++ S + QA+++APTRELA Q+ + LG ++ K GG ++ + +R L+SG H
Sbjct: 88 LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGRV D+ITR LH + F+LDEAD
Sbjct: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEAD 179
>UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 389
Score = 133 bits (322), Expect = 3e-30
Identities = 65/156 (41%), Positives = 101/156 (64%)
Frame = +2
Query: 167 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 346
+V T++ M LK EL+ I G+EKPS IQQRAI QG++++ Q+Q+G+GKTATFSI
Sbjct: 17 EVYPTWESMKLKPELIEAIKKNGWEKPSPIQQRAIYIISQGKNIMFQSQNGSGKTATFSI 76
Query: 347 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
L ++ + + + +I++PTRELA Q + + +LG A AC+GG ++ D++ L+
Sbjct: 77 GTLARLRLTSKTTELIIVSPTRELAIQTENTLKSLG----ANTRACVGGNSLGADVKALQ 132
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G+H V GTPGR+ ++ + A ++ VLDEAD
Sbjct: 133 KGIHCVSGTPGRILQLLKEHNIQAEKVQSVVLDEAD 168
>UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio
"Eukaryotic translation initiation factor 4A, isoform
1A.; n=1; Takifugu rubripes|Rep: Homolog of Brachydanio
rerio "Eukaryotic translation initiation factor 4A,
isoform 1A. - Takifugu rubripes
Length = 357
Score = 133 bits (321), Expect = 4e-30
Identities = 64/92 (69%), Positives = 79/92 (85%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V++F+ M L E LLRGI+AYGFEKPSAIQQ+AI+PCI+G DVIAQ+QSGTGKTAT+ I+
Sbjct: 20 VDSFEGMMLNENLLRGIFAYGFEKPSAIQQQAIVPCIKGFDVIAQSQSGTGKTATYVIAA 79
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIA 448
LQ+ID + QA+ILAPTRELA QIQKVV++
Sbjct: 80 LQRIDMMKEDTQAIILAPTRELANQIQKVVLS 111
Score = 36.3 bits (80), Expect = 0.69
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 515 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
R+L + + VV + RV+D++ RRA+ A I+L VLDEAD
Sbjct: 99 RELANQIQKVVLS--RVFDVLARRAVSAKAIRLLVLDEAD 136
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 133 bits (321), Expect = 4e-30
Identities = 63/152 (41%), Positives = 96/152 (63%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+FD++ L E + R I +G+E+P+ +Q P G+DVI ++++GTGKTA F+I IL+
Sbjct: 21 SFDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILE 80
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
+I R AL++ PTRELA Q+ + AL H + A GG ++ E +++LE+G
Sbjct: 81 RIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASMGEQLQKLEAGAE 140
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++VGTPGR+YD I RR L + + LDEAD
Sbjct: 141 IIVGTPGRIYDHIRRRTLKLDETMVCCLDEAD 172
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 132 bits (318), Expect = 1e-29
Identities = 63/152 (41%), Positives = 96/152 (63%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F ++ + +E + + GF P+ IQ +AI + GRDV+ Q+Q+GTGKTA FS+ IL+
Sbjct: 4 SFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILE 63
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
++D + QA++L PTRELA Q+ + + + A GG ++ + QL+ GVH
Sbjct: 64 RLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKRGVH 123
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGRV D++ R L + +K FVLDEAD
Sbjct: 124 IVVGTPGRVIDLLERGNLKLDQVKWFVLDEAD 155
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 131 bits (317), Expect = 1e-29
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+++FD+++L + R + GF PS IQ I + G+DVI QA++GTGKTA FSI I
Sbjct: 43 MDSFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPI 102
Query: 353 LQQIDT--SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
L+Q+D+ R+ QA+++ PTRELA Q+ L + + GG N+ +RQLE
Sbjct: 103 LEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLE 162
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+G +VVGTPGRV+D + R L N + VLDEAD
Sbjct: 163 NGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEAD 198
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 131 bits (316), Expect = 2e-29
Identities = 65/151 (43%), Positives = 94/151 (62%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+++ + EE+ + I GFE+PS IQ +AI + G DVI QAQ+GTGKTA F I ++++
Sbjct: 8 FNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVVEK 67
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
+ T R QALIL PTRELA Q+ + L H + GG ++ I+ L+ GV V
Sbjct: 68 VSTG-RHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALKQGVQV 126
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+GTPGR+ D + R+ L + + +LDEAD
Sbjct: 127 VIGTPGRIIDHLRRKTLILDHVNTVILDEAD 157
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 130 bits (314), Expect = 3e-29
Identities = 62/152 (40%), Positives = 93/152 (61%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF D NL +L++ I GFE+ + IQ + I + +DVI QAQ+GTGKTA F I +++
Sbjct: 4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
+I+ QA+++APTRELA Q+ + + +G AK GG ++ IR L+ +
Sbjct: 64 KINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPN 123
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++VGTPGR+ D I RR + N + V+DEAD
Sbjct: 124 IIVGTPGRLLDHINRRTIRLNNVNTVVMDEAD 155
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 129 bits (312), Expect = 5e-29
Identities = 64/151 (42%), Positives = 91/151 (60%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
FDDMNL E + + G+ P+ +Q RA P I+G+D+I ++++GTGKTA F + +L++
Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEK 90
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
I R +ALIL PTRELA Q+ + L H K A GG ++++ LE G +
Sbjct: 91 IPADERRVRALILCPTRELALQVADELKMLAKHKGLKIAAIYGGASMKQQEDALEEGTPI 150
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGRV+D I R L + VLDEAD
Sbjct: 151 IVGTPGRVFDHINRGNLKLDACDHAVLDEAD 181
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 129 bits (312), Expect = 5e-29
Identities = 68/154 (44%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI-QGRDVIAQAQSGTGKTATFSISIL 355
TFD + L LL+ I GFE PS IQ+ AI + + RD++A AQ+GTGKTA F +L
Sbjct: 2 TFDQLGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPLL 61
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESG 532
Q ID S + Q LI+APTREL QI + H+ + A GG+N++E R++ G
Sbjct: 62 QNIDASSKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSNIQEQAREISRG 121
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VV TPGR+ DM+ RR + + VLDEAD
Sbjct: 122 AQIVVATPGRMQDMMRRRMVDITKLSYCVLDEAD 155
>UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4;
Clostridiales|Rep: ATP-dependent RNA helicase -
Clostridium tetani
Length = 386
Score = 128 bits (310), Expect = 9e-29
Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
++E+FD + L + L+ G+ G KP+ IQ + I ++ +DVI Q+ +G+GKT + +
Sbjct: 1 MIESFDKLGLNQNLIEGLKQEGINKPTDIQIKTIPLALENKDVIGQSPTGSGKTLAYLLP 60
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH--LNAKCHACIGGTNVREDIRQL 523
I Q+IDTS RE QA+ILAPT ELA QI K + L + ++ IG NV+ I +L
Sbjct: 61 IFQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGNSKVSVTSTPIIGNANVKRQIEKL 120
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ HV+VG+ GR+ ++I ++ + A+TIK V+DE D
Sbjct: 121 KEKPHVIVGSSGRILELIKKKKISAHTIKTIVVDEGD 157
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 128 bits (310), Expect = 9e-29
Identities = 67/154 (43%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
+TF + + EELL+ I GFE+P+ IQ AI + G+DV QAQ+GTGKTA F I I+
Sbjct: 5 KTFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPII 64
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESG 532
+++D + QAL+L+PTRELA Q + L + GG + +R L+
Sbjct: 65 ERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALKGT 124
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V VV+GTPGRV D I R LH +++ +F+LDEAD
Sbjct: 125 VQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEAD 158
>UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor
4A-2; n=5; Oryza sativa|Rep: Putative eukaryotic
initiation factor 4A-2 - Oryza sativa subsp. japonica
(Rice)
Length = 416
Score = 128 bits (310), Expect = 9e-29
Identities = 78/194 (40%), Positives = 108/194 (55%), Gaps = 1/194 (0%)
Frame = +2
Query: 56 RRSEDWPEDSKNGPSKDQGSY-DGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAY 232
++S+D E +G +KD S ++ T D +V T + E L+
Sbjct: 10 QKSDD--ESGGDGNNKDSNSIAPSAIAINSKKKQTTKD-IVTTQGAQFISESLIGETQTK 66
Query: 233 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTR 412
+KPSA+ QR I+P G D+I Q+ GT T T ILQ++D + ECQAL+L PT
Sbjct: 67 DLDKPSAVHQRGIVPLCNGLDIIQQSLFGT--TVTLCCGILQRLDYASTECQALVLVPTH 124
Query: 413 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRAL 592
+LA + Q V+ LG L+AK HA GGT+ ED + L +GV V VGTP V M+ RAL
Sbjct: 125 DLAHETQNVIGVLGQFLSAKAHAFCGGTSAHEDQQILSTGVQVAVGTPCHVLGMLQGRAL 184
Query: 593 HANTIKLFVLDEAD 634
+ I++FVLDEAD
Sbjct: 185 CPDHIRMFVLDEAD 198
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 128 bits (309), Expect = 1e-28
Identities = 65/152 (42%), Positives = 92/152 (60%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F D NLK +L+ + GF +P+ IQ++AI + G D+I QAQ+GTGKTA F + +L
Sbjct: 56 SFTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLN 115
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
ID S + QAL+LAPTRELAQQ+ + GG++ + + L G
Sbjct: 116 NIDFSKKCVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRRGAR 175
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVVGTPGR+ D+I + +L + +K VLDEAD
Sbjct: 176 VVVGTPGRLLDLIRQGSLKLDQLKTLVLDEAD 207
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 128 bits (309), Expect = 1e-28
Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L LLR I G+E+PS IQ+++I ++G+DV+ AQ+GTGKTA F++ +L +
Sbjct: 8 FASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLAR 67
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQLESGVH 538
+RE Q L+LAPTRELAQQ+ V + H N K + GG++ R L+ G
Sbjct: 68 TQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQGPQ 127
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVGTPGRV D I R L I+ VLDEAD
Sbjct: 128 WVVGTPGRVMDHIRRGTLKLEGIRAVVLDEAD 159
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 128 bits (309), Expect = 1e-28
Identities = 62/154 (40%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSISIL 355
TF D+ L LL+ + PS IQQ+AI + ++V+ AQ+GTGKTA F + +L
Sbjct: 2 TFSDLGLNAALLQSLSENNISSPSEIQQKAIPVILNSTKNVVGVAQTGTGKTAAFGLPVL 61
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESG 532
QQI+ S+++ Q L+L PTREL QQ+ K + ++ A GG + E I++LE+
Sbjct: 62 QQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVRIHTEAVYGGKKIEEQIKKLETP 121
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H++V TPGR+ D+I R+A++ + +K +LDEAD
Sbjct: 122 KHILVATPGRLLDLIARKAVNLSNLKYLILDEAD 155
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 128 bits (309), Expect = 1e-28
Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 3/155 (1%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF ++ L + +L+ + G+EKPS IQ++AI P + GRDV+ AQ+GTGKT F+ ILQ
Sbjct: 2 TFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 359 QIDTSI---RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
++ I R ++LIL PTRELA QIQ+ A G HL + GG + + +L+
Sbjct: 62 RLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFGGVGQQPQVDKLKK 121
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV ++V TPGR+ D+ + + + +++FVLDEAD
Sbjct: 122 GVDILVATPGRLLDLQGQGFVDLSRLEIFVLDEAD 156
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 128 bits (308), Expect = 2e-28
Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L E LL + + GF + IQ I P + G+DV+ +AQ+GTGKTA F + L +
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTNVREDIRQLESGVH 538
IDTSI++ Q ++LAPTRELA Q+ + + + G D + GG + +QLE G
Sbjct: 77 IDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQ 136
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVVGTPGR+ D + R++L + +++ VLDEAD
Sbjct: 137 VVVGTPGRLMDHLRRKSLKLDELRVCVLDEAD 168
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 128 bits (308), Expect = 2e-28
Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF +++L +L + G+E PS IQ + I ++GRDV+ QAQ+GTGKTA F++ +L
Sbjct: 10 TFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLS 69
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGV 535
++D RE Q L+LAPTRELAQQ+ + G + + + GG RE + L G
Sbjct: 70 RLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRGA 129
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+VGTPGRV D + R +L + + VLDEAD
Sbjct: 130 QVIVGTPGRVIDHLDRGSLKLDGLNALVLDEAD 162
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 128 bits (308), Expect = 2e-28
Identities = 79/179 (44%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Frame = +2
Query: 113 SYDG-PPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPCI 283
SY+ P D +W V+ FD M+L LL+G+Y+YGF PS IQ AI +
Sbjct: 69 SYEAMTPAQDDPNFIPNWTTRVDDFDQMDLPPALLQGVYSYGFRAPSEIQAIAIGAIRDP 128
Query: 284 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 463
R VIAQAQSGTGKT FSI +L +ID S + QAL+LAPTRELA QI V +G +
Sbjct: 129 SNRHVIAQAQSGTGKTGAFSIGVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRI 188
Query: 464 NAKCHAC-IGGTNVREDIR-QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
A IGG D + + S H+ + TPGR D+I L K+ VLDEAD
Sbjct: 189 PGLDIAIFIGGAQRVVDAQARAASHPHICICTPGRALDLIVSGHLRVQNFKMAVLDEAD 247
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 127 bits (307), Expect = 2e-28
Identities = 65/154 (42%), Positives = 93/154 (60%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+E F + L LL+ + GFE P+ IQ+ AI ++G +++ QA +GTGKTA + + +
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
LQ+I ++ Q LI+ PTRELA Q+ V LG +L + A GG + IR L G
Sbjct: 61 LQRIQRG-KKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V V+VGTPGR+ D I R+ A IK+ +LDEAD
Sbjct: 120 VEVIVGTPGRILDHIGRKTFPAAEIKIVILDEAD 153
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 126 bits (305), Expect = 4e-28
Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ L E++ I + G+ + + IQ++ I + G+D+ QAQ+GTGKTA F I ++
Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 538
+D SI + Q+LIL PTRELA Q+ + L + A GG ++ IR L++G H
Sbjct: 63 VDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGAH 122
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGR+ D + RR L+A+ + +LDEAD
Sbjct: 123 IVVGTPGRIIDHLDRRTLNASHLSQIILDEAD 154
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 126 bits (305), Expect = 4e-28
Identities = 62/152 (40%), Positives = 92/152 (60%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF ++ L +E+++ I GFE+ + IQ + I +Q +DVI QAQ+GTGKTA F I I++
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
+++ QAL++APTRELA Q+ + + +G + GG ++ IR L+ H
Sbjct: 63 KVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPH 122
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+VGTPGR+ D I R L + VLDEAD
Sbjct: 123 VIVGTPGRIIDHINRGTLRLEHVHTVVLDEAD 154
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 126 bits (304), Expect = 5e-28
Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSIS 349
++ F+ + L + LL G+ GFE P+ IQQ++I ++ D I AQ+GTGKTA F +
Sbjct: 12 LKNFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLP 71
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 526
+L ID + RE QALILAPTRELAQQI + + HL GG N+ IR +
Sbjct: 72 LLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDIR 131
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G ++V TPGR+ D++ RR + + +K VLDEAD
Sbjct: 132 RGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEAD 167
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 125 bits (302), Expect = 9e-28
Identities = 68/153 (44%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF M L +++L G+ GF KPS IQ ++I G D+I +A+SGTGKTA F I L+
Sbjct: 25 TFSQMGLSQQVLNGLLNCGFHKPSPIQHKSIPLGRCGFDLIVRAKSGTGKTAVFGIIALE 84
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGV 535
ID I Q +ILAPTRE+A QI++V+ +LG + K + IGG + D ++L S
Sbjct: 85 MIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIKGLKVESFIGGVAMDIDRKKL-SNC 143
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+ +G PGRV +I + L + ++LFVLDEAD
Sbjct: 144 HIAIGAPGRVKHLIDKGYLKMDHVRLFVLDEAD 176
>UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Clostridiales|Rep: DEAD/DEAH box helicase domain
protein - Desulfotomaculum reducens MI-1
Length = 438
Score = 125 bits (302), Expect = 9e-28
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
+V +FD + + ++ G+ G + P+AIQ+ AI ++ +D+I Q+Q+G+GKT + +
Sbjct: 1 MVTSFDKLEIDADIAEGLSKQGIKNPTAIQKVAIPLALKNKDIIGQSQTGSGKTLAYLLP 60
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH--LNAKCHACIGGTNVREDIRQL 523
I Q+ID+S RE QALILAPT EL QI K + L + L IG N+ I +L
Sbjct: 61 IFQKIDSSKRETQALILAPTHELVMQIDKQIKTLSSNAGLTINSTVMIGEVNIVRQIEKL 120
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ H++VG+ GRV ++I R+ + ++TIK V+DEAD
Sbjct: 121 KEKPHIIVGSTGRVLELIKRKKISSHTIKTIVIDEAD 157
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 125 bits (301), Expect = 1e-27
Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ + L + L + + G+E + IQ I ++GRDV+ AQ+GTGKTA F++ IL
Sbjct: 11 FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 538
ID +R QAL+L PTRELAQQ+ + + G + + + GG ++R+ ++ L G H
Sbjct: 71 IDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGTH 130
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VV TPGR+ D I RR++ I VLDEAD
Sbjct: 131 IVVATPGRLLDHIERRSIDLTGINAVVLDEAD 162
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 124 bits (300), Expect = 2e-27
Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Frame = +2
Query: 164 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 343
+Q + F N L + + F PS IQ + I +QGRD IA AQ+GTGKTA F+
Sbjct: 2 NQEISNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFA 61
Query: 344 ISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQ 520
+ ILQ + I QALILAPTRELA Q+ + L + N GG ++Q
Sbjct: 62 LPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQ 121
Query: 521 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
L SG VVVGTPGR+ D I + L N +K F+LDEAD
Sbjct: 122 LRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEAD 159
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 124 bits (300), Expect = 2e-27
Identities = 67/164 (40%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Frame = +2
Query: 152 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 331
D D + V F ++ L+ ELLR + A G+E+P+ IQ+ A+ P + GRD++ QA +GTGKT
Sbjct: 49 DIDPAEDVAGFAELALRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKT 108
Query: 332 ATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
A F++ +L ++ T QAL+L PTRELA Q+ + + G L A+ GG +
Sbjct: 109 AAFALPLLHRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPI 168
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+R L GV VVV TPGR D + R L + + VLDEAD
Sbjct: 169 GRQVRALVQGVDVVVATPGRALDHMGRGTLRLDGLHTVVLDEAD 212
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 124 bits (300), Expect = 2e-27
Identities = 64/153 (41%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF D+ LK +L + G+EKPS IQ I + GRDV+ AQ+G+GKTA FS+ +LQ
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV 535
+D ++ Q L+LAPTRELA Q+ + + H+ A GG +R L G
Sbjct: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGR+ D + R L + + VLDEAD
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 124 bits (298), Expect = 3e-27
Identities = 61/162 (37%), Positives = 96/162 (59%), Gaps = 1/162 (0%)
Frame = +2
Query: 152 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 331
+T+ D+ E+F ++NL EL++ + KP+ IQ +AI P ++G D+I AQ+G+GKT
Sbjct: 73 NTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKT 132
Query: 332 ATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 511
A F+I IL ++ A ILAPTRELAQQI++ +LG + + +GG N+ +
Sbjct: 133 AAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQ 192
Query: 512 IRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 634
R L H+++ TPGR+ D + + +K V+DEAD
Sbjct: 193 ARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEAD 234
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 123 bits (297), Expect = 3e-27
Identities = 65/152 (42%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+N+ E+ + + GFE+ S IQ AI + +DV QAQ+GTGKTA F I +L+
Sbjct: 6 FKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLEN 65
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVH 538
ID+ QA+IL PTRELA Q+ + + L +L GG + I+ L+ GV
Sbjct: 66 IDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKGVQ 125
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+++GTPGRV D I R L N IK +LDEAD
Sbjct: 126 IIIGTPGRVMDHIDRGTLSLNNIKTVILDEAD 157
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 123 bits (296), Expect = 5e-27
Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+E+F ++L+ LL + G+E PS IQ I + G D++ +AQ+GTGKTA F++ +
Sbjct: 43 IESFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPL 102
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLES 529
L ++D +++ Q L+LAPTRELA Q+ + +L GG ++ +RQL
Sbjct: 103 LDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLAR 162
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G HV+VGTPGRV D I R++L+ +++ VLDEAD
Sbjct: 163 GAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEAD 197
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 123 bits (296), Expect = 5e-27
Identities = 53/152 (34%), Positives = 96/152 (63%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF+ L E++L+ + + G+ PS +Q+ I ++G++++ ++++G+GKTA+F+I + +
Sbjct: 4 TFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCE 63
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
I+ QALI+ PTRELA Q++ + +G +C A G ++++ I +L+ VH
Sbjct: 64 NINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQRVH 123
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VV TPGR+ D I R ++ +K V+DEAD
Sbjct: 124 IVVATPGRILDHINRGSIKLENVKYLVIDEAD 155
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 122 bits (295), Expect = 6e-27
Identities = 68/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L ELL + GFE + IQQ +I + G+D+I QA++G+GKTA FS+ IL +
Sbjct: 49 FSTLPLSPELLTVVQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAAFSLPILNK 108
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVH 538
I+ QALIL PTRELA Q+ + LG L K A GG + RE LE+GV
Sbjct: 109 INLDQPLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQADALENGVQ 168
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGR+ D + R + + +K VLDEAD
Sbjct: 169 IVVGTPGRLADFVGRNRIDLSAVKTVVLDEAD 200
>UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1;
Acidobacteria bacterium Ellin345|Rep: DEAD/DEAH box
helicase-like - Acidobacteria bacterium (strain
Ellin345)
Length = 423
Score = 122 bits (295), Expect = 6e-27
Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Frame = +2
Query: 152 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 331
D + Q + TF+DM L + L + + A F P+ +Q++AI P + GRD++A AQ+GTGKT
Sbjct: 19 DPERRQRLTTFNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKT 78
Query: 332 ATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
F I L+ + DT Q LIL PTRELA Q+ V L +GGT+ R
Sbjct: 79 LAFIIPALEMLRDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTSERN 138
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
I+ + SG VVV TPGR+ D + RR + + +++ VLDEAD
Sbjct: 139 QIQSIRSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEAD 180
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 122 bits (295), Expect = 6e-27
Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF D+ L LL+ + + G+E P+ IQ +AI+ + G DV+ AQ+GTGKTA FS+ +L
Sbjct: 6 TFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLS 65
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV 535
+IDT+ + QAL+L PTRELA Q+ + + N GG ++R +R L+
Sbjct: 66 RIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQNP 125
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+VGTPGRV D + R L + +K VLDEAD
Sbjct: 126 QVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEAD 158
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 122 bits (295), Expect = 6e-27
Identities = 61/156 (39%), Positives = 97/156 (62%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISI 352
F D+ L + +L+ + G+ P+ IQ++AI P ++GRD++ AQ+GTGKTA F SI
Sbjct: 4 FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 353 LQQIDTSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
L++ D I + C+ L+LAPTREL QI G K + +GGT+V +D +L
Sbjct: 64 LREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLH 123
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G +++ TPGR+ D+I ++A + ++++ VLDEAD
Sbjct: 124 RGTDILIATPGRLLDLIDQKAFNLGSVEVLVLDEAD 159
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 122 bits (295), Expect = 6e-27
Identities = 65/152 (42%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L + +L G+ A GF++PS IQ +AI G D+I QA+SGTGKT F+ L
Sbjct: 28 FSSLLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDLIVQAKSGTGKTCVFTTIALDS 87
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 538
+ Q L+LAPTRE+A QI VV+A+G + +CH IGG + +D + L+ H
Sbjct: 88 LILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGRPISQDKQHLKK-CH 146
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ +G+PGR+ +I AL ++I+LFVLDEAD
Sbjct: 147 IAIGSPGRIKQLIEMGALMVSSIRLFVLDEAD 178
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 122 bits (294), Expect = 8e-27
Identities = 66/152 (43%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ + L +L G+ A GFE+PS +Q +AI G D+I QA+SGTGKT FS L
Sbjct: 65 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 124
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 538
+ Q LILAPTRE+A QI V+ A+G + +CH IGGT + +D +L+ H
Sbjct: 125 LILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CH 183
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ VG+PGR+ +I L+ +I+LF+LDEAD
Sbjct: 184 IAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 215
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 122 bits (294), Expect = 8e-27
Identities = 68/152 (44%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ L E LLR + G+E PS IQ I + RDV+ QAQ+GTGKTA+F++ IL +
Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVH 538
ID QAL+LAPTRELA Q+ + ++ GG + + L GVH
Sbjct: 69 IDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGVH 128
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVVGTPGRV D + + +L + IK VLDEAD
Sbjct: 129 VVVGTPGRVIDHLEKGSLDLSRIKTMVLDEAD 160
>UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyostelium
discoideum|Rep: DEAD-box RNA helicase - Dictyostelium
discoideum AX4
Length = 465
Score = 122 bits (294), Expect = 8e-27
Identities = 63/155 (40%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSIS 349
V+TF+++ LK ELL+G+YA G+ KPS IQ+ A+ IQ ++IAQ+QSGTGKTA F++
Sbjct: 69 VKTFEELGLKPELLKGVYAMGYNKPSKIQEAALPIIIQSPNNLIAQSQSGTGKTAAFTLG 128
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+L +D SI QA+ ++PT+ELA Q +V+ +G N K I V +++
Sbjct: 129 MLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYISEIEVPKNVTN--- 185
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V++GTPG++ + + ++ L +K+ VLDEAD
Sbjct: 186 --QVIIGTPGKILENVIKKQLSVKFLKMVVLDEAD 218
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 122 bits (294), Expect = 8e-27
Identities = 66/152 (43%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ + L +L G+ A GFE+PS +Q +AI G D+I QA+SGTGKT FS L
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 538
+ Q LILAPTRE+A QI V+ A+G + +CH IGGT + +D +L+ H
Sbjct: 124 LVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CH 182
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ VG+PGR+ +I L+ +I+LF+LDEAD
Sbjct: 183 IAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 214
>UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: DEAD/DEAH box
helicase domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 422
Score = 122 bits (293), Expect = 1e-26
Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F ++ L +L + F +P+ IQ AI P + G+D++A AQ+GTGKT F + +Q
Sbjct: 4 FSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQL 63
Query: 362 IDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ T R+ +ALIL PTRELA QI + ++ + + +GG N R +R + G
Sbjct: 64 LSTEPRQPGVRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQLRDIRGGA 123
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++VV TPGR+YD ++R ++ T+++ +LDE+D
Sbjct: 124 NIVVATPGRLYDFMSRGLINLTTVRMLILDESD 156
>UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 339
Score = 122 bits (293), Expect = 1e-26
Identities = 59/97 (60%), Positives = 72/97 (74%)
Frame = +2
Query: 188 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID 367
D N+ L + G EKPSAIQQ+ I+P +G DVI QAQSGTGKTATF ILQQ++
Sbjct: 16 DSNMNGLCLLNVLCEGIEKPSAIQQKGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLN 75
Query: 368 TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 478
+ +CQAL+LAPTRELAQQI+KV+ ALGDHLN K +
Sbjct: 76 EELTQCQALVLAPTRELAQQIEKVMRALGDHLNVKIY 112
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 122 bits (293), Expect = 1e-26
Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+FD + L ++LR + G+ +P+ IQQ+AI ++GRD++A AQ+GTGKTA F++ +LQ
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 359 QIDT------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 520
+ T R +ALIL PTRELA QI + V +LN + GG ++ + +
Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121
Query: 521 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
L GV V+V TPGR+ D+ + A+ + +++ VLDEAD
Sbjct: 122 LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159
>UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=3; Clostridium perfringens|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
Length = 405
Score = 121 bits (292), Expect = 1e-26
Identities = 58/156 (37%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
++ F + L EE+L+ + G E+P+ IQ++AI ++G++VI +A++GTGKT + + I
Sbjct: 1 MDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPI 60
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA--CIGGTNVREDIRQLE 526
+++ID S E QA+IL+PT EL QI V+ L L K + +G N++ + +L+
Sbjct: 61 IEKIDDSKNEMQAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLK 120
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ H++VGT GR+ ++I ++ + NTIK V+DE D
Sbjct: 121 NKPHILVGTTGRILELINKKKITTNTIKTIVIDEGD 156
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 121 bits (292), Expect = 1e-26
Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 7/182 (3%)
Frame = +2
Query: 110 GSYDGPPG-MDPGTLDT---DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 277
G D PPG +D T + + TF+ + L L+ + A G+E+P+ IQ+ A+ P
Sbjct: 10 GRCDFPPGGIDGATSPSTVKETSAADNTFESLGLLPPLVEALSALGYEEPTPIQRAALPP 69
Query: 278 CIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIA 448
++G+D++ A +GTGKTA FS+ +LQ+I AL+L PTRELA Q+ + +
Sbjct: 70 LLEGKDLLGIAATGTGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHR 129
Query: 449 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDE 628
G L GG + + +R L+ GV VVV TPGR D + R+ L +++ VLDE
Sbjct: 130 YGQKLGISVVPLYGGQVISQQLRVLKRGVDVVVATPGRALDHLQRKTLKLEQVRVVVLDE 189
Query: 629 AD 634
AD
Sbjct: 190 AD 191
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 121 bits (292), Expect = 1e-26
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 2/155 (1%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISI 352
E F+D L EE+L I G+EKP+ IQ+ + + +D+IAQAQ+GTGKTA F I +
Sbjct: 18 ERFEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPL 77
Query: 353 LQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
L++ID + +A+I+ PTRELA QI + + +L K GG ++ + + LE
Sbjct: 78 LERIDFKANKFVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLEK 137
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV +VVGTPGR+ D + R L + ++ VLDEAD
Sbjct: 138 GVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEAD 172
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 121 bits (292), Expect = 1e-26
Identities = 57/151 (37%), Positives = 96/151 (63%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F ++NL ++R ++ GFE+ + IQ++AI ++G+D+I QA++GTGKTA F I +++
Sbjct: 4 FTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEA 63
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
I + + Q L++ PTRELA Q+ + + +G + A GG + R ++ LE H+
Sbjct: 64 IRPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALEELPHI 123
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVGTPGR+ + + R + + I++ VLDEAD
Sbjct: 124 VVGTPGRLLEHMRREYVRTSDIRIAVLDEAD 154
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 121 bits (292), Expect = 1e-26
Identities = 64/153 (41%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF+D+ L E +L+ + GFE PS IQQ I + G DV+ AQ+G+GKTA F++ +L
Sbjct: 6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV 535
QID S + Q L++APTRELA Q+ + + GG +R L+ G
Sbjct: 66 QIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGA 125
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVVGTPGR+ D I R L+ + ++ VLDEAD
Sbjct: 126 QVVVGTPGRILDHIRRGTLNLSELRFIVLDEAD 158
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 121 bits (291), Expect = 2e-26
Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Frame = +2
Query: 146 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 325
T D D+ + +F + L +++ +G+ GF+KPS IQ +AI G D+I +++SGTG
Sbjct: 15 TKDVILDENI-SFASLLLPDDIKQGLSVSGFKKPSPIQFKAIPLGRCGFDLIVKSKSGTG 73
Query: 326 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNV 502
KT FS L+ ++T+ Q LIL PTRE+A QI+ V+ ++G H+N K + IGG +
Sbjct: 74 KTLVFSTIALETVNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVNGLKIESFIGGRPL 133
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+D+++ S H+ VG PGRV ++ AL N +KLFVLDEAD
Sbjct: 134 EDDLKK-SSKCHIAVGAPGRVKHLLKMGALTTNLVKLFVLDEAD 176
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 121 bits (291), Expect = 2e-26
Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
FD E LL+ + G+ PS IQ+ A + GRD++ QAQ+GTGKTA F++ +L++
Sbjct: 73 FDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 132
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLESGVH 538
+++ + Q L+LAPTRELA Q+ A H + K A GGT+ R I L GV
Sbjct: 133 LESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVD 192
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVVGTPGRV D + + L + + VLDEAD
Sbjct: 193 VVVGTPGRVMDHMRQGTLDTSGLTSLVLDEAD 224
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 121 bits (291), Expect = 2e-26
Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
+ DM L E+ + A + +PS IQ I ++GRDV+ QA++GTGKTA F I I+++
Sbjct: 6 YADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPIIER 65
Query: 362 ID--TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
++ + R QALIL PTRELA Q++ + L A GG +R + +L+
Sbjct: 66 LEHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLKRAP 125
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+VVGTPGRV D++TRRAL ++ VLDEAD
Sbjct: 126 HIVVGTPGRVIDLMTRRALQLEMLRTVVLDEAD 158
>UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP5 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 546
Score = 121 bits (291), Expect = 2e-26
Identities = 65/164 (39%), Positives = 107/164 (65%), Gaps = 4/164 (2%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 346
V++F ++NL E+L++GI A GF+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 147 VQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTL 206
Query: 347 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
++L ++D +I QA+ +AP+RELA+QIQ+V+ +G I G+ R +++
Sbjct: 207 NMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQVGTFLAIPGSWSRNS--RID 264
Query: 527 SGVHVVVGTPGRVYDMITR--RALHANTIKLFVLDEADXNVVQR 652
+++GTPG + DM+ R R L I++ VLDEAD + Q+
Sbjct: 265 K--QILIGTPGTLVDMLMRGSRILDPRMIRVLVLDEADELIAQQ 306
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 120 bits (290), Expect = 2e-26
Identities = 63/152 (41%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ + L +L + + G+E PS IQ++ I + +D+I QAQ+GTGKTA F + +L +
Sbjct: 14 FERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLLDK 73
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 538
I+ +I Q LILAPTRELA Q+ + V + GG + +R L+ GVH
Sbjct: 74 INLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKRGVH 133
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGRV D I ++ L + +K FVLDEAD
Sbjct: 134 AIVGTPGRVMDHIEKKTLKLDNLKSFVLDEAD 165
>UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3;
Platyhelminthes|Rep: DEAD box polypeptide 19 protein -
Dugesia japonica (Planarian)
Length = 434
Score = 120 bits (290), Expect = 2e-26
Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 6/160 (3%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI--QGRDVIAQAQSGTGKTATFSI 346
V++F+D+ LK ELL GI + GF KPS+IQ+RA+ + Q +++IAQ+QSGTGKTATF +
Sbjct: 47 VKSFEDLQLKSELLNGISSMGFRKPSSIQERALPMLLENQPKNLIAQSQSGTGKTATFLL 106
Query: 347 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQL 523
++L +ID + CQ L +APTREL QI +V I + + N K I G + DI +
Sbjct: 107 TMLSKIDVNDPFCQCLCMAPTRELVNQIAEVAIIMSKFMNNVKITCAIKG--LSPDILEG 164
Query: 524 ESGVHVVVGTPGRVYDMIT-RRALHAN--TIKLFVLDEAD 634
+ +++GTPG + T +L+ N +K+FVLDEAD
Sbjct: 165 QINSQIIIGTPGTLKFWTTDNSSLYFNPKKLKVFVLDEAD 204
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 120 bits (289), Expect = 3e-26
Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR-DVIAQAQSGTGKTATFSISILQ 358
F+ + L E LLR I GFE P+ +Q++AI ++ D++A AQ+GTGKTA F ++Q
Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFPVIQ 63
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQLESGV 535
+ID + R QALIL+PTREL QI + + A GG ++ E R ++ G
Sbjct: 64 KIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIKRGA 123
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++V TPGR+ DMI RR + + I +LDEAD
Sbjct: 124 QIIVATPGRMQDMINRRLVDISQINYCILDEAD 156
>UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23;
Dikarya|Rep: ATP-dependent RNA helicase DBP5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 482
Score = 120 bits (289), Expect = 3e-26
Identities = 67/161 (41%), Positives = 103/161 (63%), Gaps = 2/161 (1%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSIS 349
++FD++ L ELL+GIYA F+KPS IQ+RA+ + R++IAQ+QSGTGKTA FS++
Sbjct: 92 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 151
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+L +++ QA+ LAP+RELA+Q +VV +G + + E +Q+ +
Sbjct: 152 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV--PDSFEKNKQINA 209
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQR 652
V+VGTPG V D++ R+ + IK+FVLDEAD + Q+
Sbjct: 210 --QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQ 248
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 120 bits (288), Expect = 4e-26
Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI-QGRDVIAQAQSGTGKTATFSIS 349
++TF+++ + E+ + I G+E P +Q+ I + + DV+A AQ+GTGKTA F +
Sbjct: 1 MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLE 526
+LQQID R Q+LIL PTREL QI + +++ K GG+++ IR L+
Sbjct: 61 LLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GVH++V TPGR+ D++ R+ + +T+ V+DEAD
Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEAD 156
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 119 bits (287), Expect = 6e-26
Identities = 63/154 (40%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF+++NL E +L+ + G+ P+ IQ+++I +QG+D++ AQ+GTGKTA FSI ILQ
Sbjct: 2 TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 359 QI-DTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
++ T R+ +AL+L PTRELA QI + A G + K GG + L SG
Sbjct: 62 KLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRSG 121
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ ++V TPGR+ D+I++ + +++ FVLDEAD
Sbjct: 122 IQILVATPGRLLDLISQGFISLSSLDFFVLDEAD 155
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 119 bits (287), Expect = 6e-26
Identities = 63/153 (41%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L L GI A G+ + +Q +++ P ++G DVIAQA +G+GKTA F + +LQ+
Sbjct: 28 FSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQK 87
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLES-GV 535
+D ++ QAL+L PTRELA Q+ K + L + N K GG + + LE+
Sbjct: 88 LDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDP 147
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
HVVVGTPGR+ ++ +RALH ++ VLDEAD
Sbjct: 148 HVVVGTPGRIQELARKRALHLGGVRTLVLDEAD 180
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 119 bits (286), Expect = 8e-26
Identities = 63/153 (41%), Positives = 92/153 (60%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
E F M LK +LL+ I GFEKP+ IQ ++I + G D++ QAQ+GTGKTA+F I IL
Sbjct: 4 ENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPIL 63
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
++ QAL+L PTRELA Q+ + + +L + + A GG ++ +R L
Sbjct: 64 NRVIKG-EGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSLRRNP 122
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++VGTPGR+ D + R + + +K VLDEAD
Sbjct: 123 EIIVGTPGRLMDHMNRGTISLSPLKYVVLDEAD 155
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 119 bits (286), Expect = 8e-26
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L ++++ + G+E P+ IQQ AI + GRDV+ QAQ+GTGKTA F++ ++
Sbjct: 9 FSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINN 68
Query: 362 IDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESG 532
+D + R+ Q L+LAPTRELA Q+ + A ++ ACI GG IR L+ G
Sbjct: 69 MDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQG 128
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V VVVGT GRV D I + L + ++ VLDEAD
Sbjct: 129 VKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEAD 162
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 119 bits (286), Expect = 8e-26
Identities = 59/155 (38%), Positives = 90/155 (58%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
+ F D L +ELL+ I FE P+ +QQ+ I ++ +D+I ++Q+G+GKTA F+I
Sbjct: 2 IKSNFSDYQLSDELLKSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIP 61
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
I Q +D + QAL+L PTRELA Q+++ + +G K A G ++L+
Sbjct: 62 ICQLVDWDENKPQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQ 121
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
HVVVGTPGR+ D + + + IK V+DEAD
Sbjct: 122 KTHVVVGTPGRIIDHMEKGTFDTSQIKYLVIDEAD 156
>UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia
intestinalis|Rep: GLP_15_13424_14974 - Giardia lamblia
ATCC 50803
Length = 516
Score = 119 bits (286), Expect = 8e-26
Identities = 73/158 (46%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D NL+EE+L+ I + GFE PS +Q AI P ++ +DVI QA+SG GKTA F +S+L
Sbjct: 130 FSDFNLREEVLQAIISNGFESPSDVQSMAIPPALEHKDVICQAKSGKGKTAVFVLSLLHM 189
Query: 362 ID--TSIRECQALILAPTRELAQQIQK----VVIALGDHLNAKCHACIGGTNVREDIRQL 523
ID + + QAL+L T ELA QI K I L D + K IGG V +R L
Sbjct: 190 IDPQAAPHKVQALVLCNTHELAMQIYKEFTRFAINLPD-IKDKILCAIGGVTVSLHVRAL 248
Query: 524 ES-GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+S V + VGT GRV D++ R AL + IK VLDE D
Sbjct: 249 KSKDVSIAVGTIGRVSDLVERGALDLSFIKYLVLDEFD 286
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 119 bits (286), Expect = 8e-26
Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 1/162 (0%)
Frame = +2
Query: 152 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 331
D D D TF+D+ + EL R G+++P+ IQ AI + G+D+I A++G+GKT
Sbjct: 33 DDDKDDDTPTFEDLGVCVELCRACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKT 92
Query: 332 ATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 511
A F+I ILQ++ + +LILAPTREL+ QI++ +I+LG + +GG ++
Sbjct: 93 AAFTIPILQKLLEKPQRLFSLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLDMVSQ 152
Query: 512 IRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 634
QL H++VG+PGR+ D + + TIK VLDEAD
Sbjct: 153 ALQLSKKPHIIVGSPGRIADHLQNTKGFSLETIKYLVLDEAD 194
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 118 bits (285), Expect = 1e-25
Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Frame = +2
Query: 152 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 331
+ D D V TF + L EE+L + GF P+ IQ AI P ++ RDV+ AQ+GTGKT
Sbjct: 39 EEDTDTV--TFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKT 96
Query: 332 ATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVRE 508
A F + +L +D R QAL+LAPTRELA Q Q + GG+
Sbjct: 97 AAFGLPLLAIVDADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGP 156
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
I L+ G VVVGTPGRV D+I + AL + +++ VLDEAD
Sbjct: 157 QIGALKRGAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEAD 198
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 118 bits (284), Expect = 1e-25
Identities = 61/152 (40%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQ 358
F M L + +L I G+E P+ IQ++ I + G++ VI QAQ+GTGKTA F I +++
Sbjct: 4 FQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLIE 63
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
++D + QAL+L PTRELA Q+ + +L + GG ++ IR L+ V
Sbjct: 64 RLDEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIRALKRRVD 123
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGR+ D + R L IK V+DEAD
Sbjct: 124 LVVGTPGRIIDHLNRGTLDITKIKYLVIDEAD 155
>UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1;
Pseudoalteromonas atlantica T6c|Rep: DEAD/DEAH box
helicase-like - Pseudoalteromonas atlantica (strain T6c
/ BAA-1087)
Length = 458
Score = 118 bits (283), Expect = 2e-25
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F+ + L++EL+ I G+ + IQ+ AI + D++A AQ+GTGKTA F++ +LQ
Sbjct: 2 SFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLLQ 61
Query: 359 QI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
++ T ++ ++LI+ PTRELA Q+ V LN + A GG + I QL+
Sbjct: 62 RLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQLQ 121
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV V++ TPGR+ D+ +RALH +++ V DEAD
Sbjct: 122 EGVDVLIATPGRLLDLYEQRALHFENLEILVFDEAD 157
>UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82;
Eukaryota|Rep: ATP-dependent RNA helicase WM6 -
Drosophila melanogaster (Fruit fly)
Length = 424
Score = 118 bits (283), Expect = 2e-25
Identities = 66/163 (40%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D LK E+LR I GFE PS +Q I + G D++ QA+SG GKTA F ++ LQQ
Sbjct: 43 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102
Query: 362 IDTSIRE-CQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV 535
++ S C L++ TRELA QI K ++ K GG +++D L+SG
Sbjct: 103 LEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGT 162
Query: 536 -HVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQRXSR 661
H+VVGTPGR+ +I + L+ +K FVLDE D + Q R
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMR 205
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 117 bits (282), Expect = 2e-25
Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F+D +LK++LLR + GFE+PS +Q + I I G+DV+ QA++GTGKTA F +S+L
Sbjct: 39 SFNDFSLKQDLLRSVKEAGFERPSEVQHQCIPNAIHGKDVLCQAKAGTGKTAVFVLSVLN 98
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES-GV 535
Q+ + L+L TRELA QI+ LG N K A GG DI L++
Sbjct: 99 QLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKFTNFKVKAVYGGVEESVDIHTLKTKKP 158
Query: 536 HVVVGTPGRVYDMITRR--ALHANTIKLFVLDEAD 634
H++V TPGR +I + + I+ F++DE D
Sbjct: 159 HILVATPGRCLSLIKAKPSVIETQNIEYFIIDECD 193
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 117 bits (282), Expect = 2e-25
Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF+ + L E +R I G+ P+ IQ I +QG+D++A AQ+GTGKTA F + I++
Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84
Query: 359 QIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ + + +L+L PTRELA Q++ A +L + A GG ++R +++L+
Sbjct: 85 LLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQ 144
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV ++V TPGR+ D+I ++ + + +K+ VLDEAD
Sbjct: 145 GGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEAD 180
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 117 bits (282), Expect = 2e-25
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F+ + L +L+ I G+ +PSAIQ +AI ++G+DV+A AQ+GTGKTA F++ +L+
Sbjct: 6 SFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLE 65
Query: 359 QI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ + + +AL+L PTRELA Q+ + V G HL+ K GG + + L
Sbjct: 66 ILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMALR 125
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G +++ TPGR+ D+ ++A+ + +++ VLDEAD
Sbjct: 126 RGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEAD 161
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 117 bits (282), Expect = 2e-25
Identities = 60/153 (39%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F+ N ++ G+ A G+++P+ IQ +AI P + G DVI AQ+GTGKTA +++ I+Q
Sbjct: 2 SFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPIIQ 61
Query: 359 QIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
++ ++ R + L++APTRELA QI +LG + + GG N+ + IR+L SGV
Sbjct: 62 KMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSGV 121
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVV PGR+ D I R + ++ ++DEAD
Sbjct: 122 DVVVACPGRLLDHIWRGTIDVCGVETLIIDEAD 154
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 117 bits (282), Expect = 2e-25
Identities = 59/151 (39%), Positives = 88/151 (58%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + ++ ++ R + GFE + IQ + + G DV+ +AQ+GTGKTA F+I +L+
Sbjct: 6 FSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLEN 65
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
++ R QALI+ PTREL Q+ + + +G ++ K A GG ++ I QL GVHV
Sbjct: 66 LEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLRRGVHV 124
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+V TPGR+ D I R + I VLDEAD
Sbjct: 125 IVATPGRLIDHIERGTVDLGGISTVVLDEAD 155
>UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;
Eukaryota|Rep: ATP-dependent RNA helicase DDX39 - Homo
sapiens (Human)
Length = 427
Score = 117 bits (282), Expect = 2e-25
Identities = 73/197 (37%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Frame = +2
Query: 80 DSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET-FDDMNLKEELLRGIYAYGFEKPSAI 256
D + P Q S PP D + + + + F D LK ELLR I GFE PS +
Sbjct: 14 DEEEEPQAPQESTPAPPKKD---IKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEV 70
Query: 257 QQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQK 436
Q I I G DV+ QA+SG GKTA F ++ LQQI+ + L++ TRELA QI K
Sbjct: 71 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISK 130
Query: 437 VVIALGDHL-NAKCHACIGGTNVREDIRQLESGV-HVVVGTPGRVYDMITRRALHANTIK 610
++ + K GG ++++D L+ HVVVGTPGR+ ++ R+ +K
Sbjct: 131 EYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVK 190
Query: 611 LFVLDEADXNVVQRXSR 661
FVLDE D + Q R
Sbjct: 191 HFVLDECDKMLEQLDMR 207
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 117 bits (281), Expect = 3e-25
Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 8/160 (5%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF + L E+L + G+ P+ IQ + I + G+DV+A AQ+GTGKTA F++ +L
Sbjct: 6 TFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLLY 65
Query: 359 QI----DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 514
++ +TS+ + ALI+APTRELA QI + V G +L + GG N+ I
Sbjct: 66 RLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQI 125
Query: 515 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
L++GV ++V TPGR+ D++ ++A++ + ++ VLDEAD
Sbjct: 126 AALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEAD 165
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 117 bits (281), Expect = 3e-25
Identities = 56/155 (36%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSIS 349
V+ F+ L ++ + GF P+ IQ++A+ + G D I A +GTGKTA F I
Sbjct: 43 VDNFESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIP 102
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+++ ID+++++ QAL+L+PTRELA Q+ + + LG + GG + R I ++
Sbjct: 103 LIENIDSTVKDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIKR 162
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G H+VV TPGR+ D + ++ + ++K VLDEAD
Sbjct: 163 GAHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEAD 197
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 117 bits (281), Expect = 3e-25
Identities = 55/146 (37%), Positives = 92/146 (63%)
Frame = +2
Query: 227 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAP 406
A GF+KP+ +Q++A + G+DVIA++ +GTGKT +++ +L++I + QA+ILAP
Sbjct: 21 ASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAP 80
Query: 407 TRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRR 586
+REL QI +V+ + + IGG NV++ + +L+ H++VGTPGRV+++I +
Sbjct: 81 SRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAK 140
Query: 587 ALHANTIKLFVLDEADXNVVQRXSRT 664
L + +K VLDE D V+ T
Sbjct: 141 KLKMHEVKTIVLDETDQLVLPEHRET 166
>UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_12,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 471
Score = 117 bits (281), Expect = 3e-25
Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V F + LKEELLR + GFE P+ +Q ++ + G +I QA++GTGKTA F +++
Sbjct: 72 VSQFKNFGLKEELLRAVKEAGFEHPTRVQAESLTNALLGEQLICQAKAGTGKTAVFVLTV 131
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI--GGTNVREDIRQLE 526
L I+T + + L++ TRELAQQ + + LG + + C GG V +I+ +E
Sbjct: 132 LNTINTESNKVECLVITHTRELAQQARDEFLRLGKFMKSVKVECFYGGGEPVSVNIQTIE 191
Query: 527 S-GVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 634
+ +VVGTPGR+ D+I R+AL + +K F+LDEAD
Sbjct: 192 TVKPQIVVGTPGRLKDLICERKALKVDRLKYFILDEAD 229
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 116 bits (280), Expect = 4e-25
Identities = 63/161 (39%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
+ TF ++ L L + GF P+ IQQ+AI +QGRDV+A AQ+GTGKTA + +
Sbjct: 1 MTNTFIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLP 60
Query: 350 ILQQIDTSIRE------CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 511
++Q + RE +ALILAPTRELAQQ+ + H GGT++R
Sbjct: 61 LIQMLSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQ 120
Query: 512 IRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
QL GV +++ TPGR+ D + + N +++ VLDEAD
Sbjct: 121 QEQLAKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEAD 161
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 116 bits (280), Expect = 4e-25
Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F + L L++ + G+ KP+ IQ +AI ++G+D+ AQ+GTGKTA F++ +
Sbjct: 7 SFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPSIH 66
Query: 359 QIDTSI-----RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 523
+ T+ R C+ LIL+PTRELA QI + HL +A GG + +R L
Sbjct: 67 YLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRML 126
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ G ++V TPGR+ D+I +RAL +++FVLDEAD
Sbjct: 127 DRGTDILVATPGRLLDLIDQRALVLKDVEVFVLDEAD 163
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 116 bits (280), Expect = 4e-25
Identities = 56/151 (37%), Positives = 90/151 (59%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + + EE+ + +P+ +Q +AI P + RDV+AQAQ+GTGKT F + IL++
Sbjct: 5 FAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILER 64
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
++ QALI+ PTRELA QI L + A GG +V + +R+L+ +H+
Sbjct: 65 VNVEKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLKGSIHI 124
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++GTPGR+ D + R+ ++ + + VLDEAD
Sbjct: 125 IIGTPGRLLDHLRRKTINLGKLSMLVLDEAD 155
>UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;
Bigelowiella natans|Rep: Translation initiation factor
4A2 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 378
Score = 116 bits (280), Expect = 4e-25
Identities = 61/154 (39%), Positives = 89/154 (57%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V++F D+ LK + +G++ S IQ ++P ++GRD+I Q+ SGTGKT + I
Sbjct: 9 VKSFFDLKLKNSIKKGVFINAMYYCSKIQSITLIPLLKGRDIIYQSPSGTGKTTCYIIGT 68
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
Q+ SI Q LIL PTREL+ QI+ V L + +C GG + ED++ L+
Sbjct: 69 SNQLCQSINSPQCLILVPTRELSIQIRNVFNVLNIYTKNSITSCHGGRWLGEDLKNLKKN 128
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H +VGTPGRV ++ +L I+ FVLDEAD
Sbjct: 129 FHGIVGTPGRVLHLLQIGSLAITKIRTFVLDEAD 162
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 116 bits (279), Expect = 5e-25
Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F ++NL E+ I GFE+ S IQ AI ++G+D+I AQ+GTGKTA F+I ++
Sbjct: 11 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIEL 70
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVH 538
++ + QALIL PTREL Q+ + L + N + GG + +R L
Sbjct: 71 LEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKNPQ 130
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+V+ TPGR+ D + R ++H + IK+ VLDEAD
Sbjct: 131 IVIATPGRMMDHMRRGSIHLDEIKIVVLDEAD 162
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 116 bits (279), Expect = 5e-25
Identities = 58/153 (37%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F+DM L +L + A F P+ IQ +AI ++G+DV+ +AQ+GTGKTA F + L
Sbjct: 9 SFNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPALA 68
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGV 535
+ID S+++ Q L++ PTRELA Q+ + + + A + GG ++ L+ G
Sbjct: 69 KIDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKALKQGT 128
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGR+ D++ + L + +K+ VLDEAD
Sbjct: 129 AIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEAD 161
>UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2;
Treponema|Rep: ATP-dependent RNA helicase - Treponema
pallidum
Length = 649
Score = 116 bits (279), Expect = 5e-25
Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSISIL 355
+F+++ L E+ L + GF P+ IQ AI + G ++IA+A++GTGKTA F + ++
Sbjct: 47 SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 106
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
Q++ + AL+L PTRELA Q+ + +L + H GG ++ E +R LE G
Sbjct: 107 QELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGG 166
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++VGT GRV D I R +L + ++ F+LDEAD
Sbjct: 167 EIIVGTTGRVIDHIERGSLELSYLRYFILDEAD 199
>UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55;
Eukaryota|Rep: Spliceosome RNA helicase BAT1 - Homo
sapiens (Human)
Length = 428
Score = 116 bits (279), Expect = 5e-25
Identities = 65/162 (40%), Positives = 90/162 (55%), Gaps = 2/162 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D LK ELLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 47 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV- 535
++ + L++ TRELA QI K ++ N K GG ++++D L+
Sbjct: 107 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQRXSR 661
H+VVGTPGR+ + ++L+ IK F+LDE D + Q R
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMR 208
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 116 bits (279), Expect = 5e-25
Identities = 68/154 (44%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 532
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+VVGTPGRV + + L ++ F+LDE D
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 200
>UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7;
Ascomycota|Rep: ATP-dependent RNA helicase DBP5 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 504
Score = 116 bits (279), Expect = 5e-25
Identities = 78/208 (37%), Positives = 116/208 (55%), Gaps = 6/208 (2%)
Frame = +2
Query: 47 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWD-QVVETFDDMNLKEELLRGI 223
SS D D N + +YD + G DTD + +F ++ L + ++ G+
Sbjct: 54 SSTLAVPDGAADGANSSGLQESNYDVEVQL--GDPDTDSPLSSISSFSELGLPQGIIDGL 111
Query: 224 YAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSISILQQID-TSIRECQAL 394
A F+KPS IQ RA+ + R++IAQ+QSGTGKT F ++IL ++D + QAL
Sbjct: 112 LAMNFKKPSKIQARALPLMLSNPPRNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQAL 171
Query: 395 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV--HVVVGTPGRVY 568
LAP+RELA+QIQ V+ ++G C + + I + E+GV +VVVGTPG V
Sbjct: 172 ALAPSRELARQIQSVIQSIGQF----CTGLVVDAAIPGAISR-ETGVKANVVVGTPGTVM 226
Query: 569 DMITRRALHANTIKLFVLDEADXNVVQR 652
D+I RR + +KL V+DEAD + Q+
Sbjct: 227 DLIRRRQFDVSQLKLLVVDEADNMLDQQ 254
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 116 bits (278), Expect = 7e-25
Identities = 58/153 (37%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF ++ L +++L + F + + IQ RAI ++G+++ ++ +GTGKTA+F + IL+
Sbjct: 2 TFKELQLSDKVLVALEKANFNEATEIQARAIPLFLEGKNIFGKSSTGTGKTASFVLPILE 61
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV 535
+I+ + R QA+I+APTRELA QI + G + N IGG ++R+ I++L+
Sbjct: 62 KIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQIKRLKDS- 120
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGRV D + R+ L + ++ +LDEAD
Sbjct: 121 QIVVGTPGRVNDHLNRKTLKLDDVRTIILDEAD 153
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 116 bits (278), Expect = 7e-25
Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 8/160 (5%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TFD L E+L+ I G+ P+ IQ +AI + GRDV+ AQ+GTGKTA+FS+ I+Q
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 359 ----QIDTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 514
Q +TS + ALIL PTRELA Q+ V A H + GG ++ +
Sbjct: 72 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131
Query: 515 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+L GV +++ TPGR+ D + ++ + +++ VLDEAD
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEAD 171
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 116 bits (278), Expect = 7e-25
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L E+++ + G+ P+ IQ +AI + +D++ AQ+GTGKTA F++ ++QQ
Sbjct: 105 FSKLGLDAEIVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLIQQ 164
Query: 362 -----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
I R +A+IL+PTRELA QI + ++ G L IGG +R+ +R L
Sbjct: 165 LLMNPIAIKGRSARAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAPIRKQMRDLS 224
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV ++V TPGR+ D++ ++ L + K VLDEAD
Sbjct: 225 KGVDILVATPGRLEDLVDQKGLRLDETKFLVLDEAD 260
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 116 bits (278), Expect = 7e-25
Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
V TF + L EL + G++ P+AIQ + +QGRD+IA A++G+GKTA F +
Sbjct: 49 VSPTFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLP 108
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
ILQ++ + ALILAPTREL QI + ++A+G L +GG + L
Sbjct: 109 ILQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAK 168
Query: 530 GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
HVVVG+PGRV D + + + ++K+ VLDEAD
Sbjct: 169 KPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEAD 204
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 116 bits (278), Expect = 7e-25
Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF D+ + +LR I G+E P+AIQ I + G DV+ AQ+GTGKTA F+I +L
Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN-AKCHACIGGTNVREDIRQLESGV 535
+ID + + QAL+L PTRELA Q+ + G +L+ GG++ + L G
Sbjct: 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVVGTPGR+ D + R L + + VLDEAD
Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEAD 166
>UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=2;
Culicidae|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 1061
Score = 115 bits (277), Expect = 9e-25
Identities = 66/166 (39%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Frame = +2
Query: 140 PGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 319
P T D ++D ++ F M L E +LRG+ F PS IQ RAI G D++ QA+SG
Sbjct: 11 PRTADVEFDLSLQ-FSKMFLSEPVLRGLTRNNFTHPSPIQARAIPLAKLGLDLLVQAKSG 69
Query: 320 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 496
TGKT F++ I + + + Q+L + PTRE+A QI+ V+ +G + N + + IGG
Sbjct: 70 TGKTLVFTVLITENHNPDVMFPQSLTVVPTREIAVQIEDVLNRIGYSVPNFRAKSFIGGL 129
Query: 497 NVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++ +D + L+S VVGTPGR+ +I L+ + IK+ VLDEAD
Sbjct: 130 DISQDRKNLQS-CSAVVGTPGRINHLIKSNVLNTSQIKILVLDEAD 174
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 115 bits (277), Expect = 9e-25
Identities = 57/151 (37%), Positives = 90/151 (59%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F++ NL+ EL+ I G+ +P+ +Q AI + G D++ ++++G+GKTA + I I+
Sbjct: 4 FEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPIINN 63
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
+ +ALIL PTRELA Q+ KV ALG + GG ++ + I + G ++
Sbjct: 64 TAKE-KGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQIELILRGANI 122
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGR D+I R L+ + + FVLDEAD
Sbjct: 123 IVGTPGRTLDLIDRGILNFDKVSYFVLDEAD 153
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 115 bits (277), Expect = 9e-25
Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V++F + +L ELL I + + +P+ IQ AI +QG+D++ A++G+GKTA F+I I
Sbjct: 97 VQSFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPI 156
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
LQ + T+ + AL+LAPTRELA QI++ ALG + + IGG ++ E R L
Sbjct: 157 LQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRK 216
Query: 533 VHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
HV++ TPGR+ D + + ++ V+DE D
Sbjct: 217 PHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVD 251
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 115 bits (276), Expect = 1e-24
Identities = 60/152 (39%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ L + +++ + G+E PS IQ I + GRDV+ QAQ+GTGKTA F++ +L +
Sbjct: 17 FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 538
+ + Q L+LAPTRELA Q+ + ++ + GG + + + L+ GVH
Sbjct: 77 TVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVH 136
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+VGTPGRV D + R L + +K VLDEAD
Sbjct: 137 VIVGTPGRVIDHLERGTLDLSELKTLVLDEAD 168
>UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Acidiphilium cryptum JF-5|Rep: DEAD/DEAH box
helicase domain protein - Acidiphilium cryptum (strain
JF-5)
Length = 525
Score = 115 bits (276), Expect = 1e-24
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Frame = +2
Query: 158 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 337
D V+ F + L E LLR I +E P+ IQ R+I ++G D++ AQ+GTGKTA
Sbjct: 51 DESAVLTDFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAA 110
Query: 338 FSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
F + IL +I + R C+AL+LAPTRELA QI G IGG
Sbjct: 111 FVLPILHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKP 170
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
R++ESGV ++V TPGR+ D + + + ++ VLDEAD
Sbjct: 171 GPQARRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEAD 214
>UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellular
organisms|Rep: ATP-dependent RNA helicase - Bdellovibrio
bacteriovorus
Length = 505
Score = 114 bits (275), Expect = 2e-24
Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ L L + G+E P+ IQ AI ++G D++ AQ+GTGKTA FS+ ILQ
Sbjct: 6 FTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSLPILQN 65
Query: 362 IDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ R+ + LIL PTRELA QI + + A HLN K GG +R L+
Sbjct: 66 LSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRALQ 125
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV +++ TPGR+ D+ ++ L + +++FVLDEAD
Sbjct: 126 GGVDILIATPGRLMDLHGQKHLKLDRVEIFVLDEAD 161
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 114 bits (275), Expect = 2e-24
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
VET +++ + + + + G + S IQ +++ +QG+DVI QAQ+G+GKT F I
Sbjct: 3 VETVKQLDINPAITKALDSQGIHQLSPIQAQSLPDALQGKDVIGQAQTGSGKTLCFVIPA 62
Query: 353 LQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
L++I+ + QA++L PTRELA+Q+ Q+ A D N K GG + I+ L+
Sbjct: 63 LEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLKH 122
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H++VGTPGRV D + +R + +KL VLDEAD
Sbjct: 123 SPHIIVGTPGRVMDHVEKRRIDLRNVKLRVLDEAD 157
>UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n=7;
Trypanosomatidae|Rep: ATP-dependent RNA helicase,
putative - Leishmania major
Length = 803
Score = 114 bits (275), Expect = 2e-24
Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F NL++ LL I GF P+ IQ++AI P +QG DV+A A++G+GKTA F I +L
Sbjct: 24 FQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNT 83
Query: 362 IDT--SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ I + L+L+PTREL+ QI + AL L+ + A +GG ++ + L S
Sbjct: 84 LKAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASNP 143
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVV TPGR+ ++ +LH +++ VLDEAD
Sbjct: 144 DVVVATPGRLLHIMEEASLHLTSVRCLVLDEAD 176
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 114 bits (274), Expect = 2e-24
Identities = 64/176 (36%), Positives = 100/176 (56%)
Frame = +2
Query: 107 QGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 286
Q S + P L + Q + FD LK+ +L+GI GF PS +Q ++I +Q
Sbjct: 22 QQSEESPSVTIKQGLKSKHKQDTQGFDVFGLKDFVLKGIREAGFSTPSPVQSQSIPIILQ 81
Query: 287 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 466
G+D+IAQAQ+GTGKTA F+I IL ++ + ++ +ALI+ PTRELA QI + ++ LG
Sbjct: 82 GKDLIAQAQTGTGKTAAFAIPILNTLNRN-KDIEALIITPTRELAMQISEEILKLGRFGR 140
Query: 467 AKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
K GG +++ LE ++ TPGR+ D + + + ++ VLDE+D
Sbjct: 141 IKTICMYGGQSIKRQCDLLEKKPKAMIATPGRLLDHLQNGRIAHFSPQIVVLDESD 196
>UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=1;
Propionibacterium acnes|Rep: Putative ATP-dependent RNA
helicase - Propionibacterium acnes
Length = 561
Score = 114 bits (274), Expect = 2e-24
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Frame = +2
Query: 74 PEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSA 253
P+ + N ++ DGP + TL V +F D+ ++E++ + + G P
Sbjct: 19 PDVALNDVTRTTPGLDGPTHEEAKTLTETTVSVPTSFADLGVREDICQALEGVGIVSPFP 78
Query: 254 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID----------TSIRECQALILA 403
IQ +I ++G D+I QA++GTGKT F I+IL +I T+ + QAL++
Sbjct: 79 IQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGKPQALVMC 138
Query: 404 PTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR 583
PTRELA Q+ K + A+ GG I L++GV VVVGTPGR+ D+ R
Sbjct: 139 PTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVDVVVGTPGRLLDLSQR 198
Query: 584 RALHANTIKLFVLDEAD 634
+ L + +++ VLDEAD
Sbjct: 199 KDLDLSHVRIVVLDEAD 215
>UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=18;
Alphaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Jannaschia sp. (strain CCS1)
Length = 644
Score = 114 bits (274), Expect = 2e-24
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Frame = +2
Query: 158 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 337
DW + TF D++L ++ + I G+E P+ IQ AI P + GRDV+ AQ+GTGKTA+
Sbjct: 6 DWTPMT-TFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTAS 64
Query: 338 FS---ISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
F+ I++L + R ++L+L PTRELA Q+ + H+ IGG + +E
Sbjct: 65 FTLPMITMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKE 124
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ ++ GV V++ TPGR+ D R L N +K+ V+DEAD
Sbjct: 125 QEQAIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEAD 166
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 114 bits (274), Expect = 2e-24
Identities = 55/152 (36%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L E+L++ + + G+E+ + IQ+ ++ + G+D+IAQA++GTGKTA F + +L +
Sbjct: 6 FASLPLSEDLIKNVASLGYEEMTEIQELSLPAILDGKDLIAQAKTGTGKTAAFGLGVLSK 65
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVH 538
+ Q LIL PTREL +Q+ K + L + N K + GG R ++ + G H
Sbjct: 66 LVLDDYRIQVLILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQMKSVAHGAH 125
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGR+ + + +L + ++ VLDEAD
Sbjct: 126 IVVGTPGRILKHLNKSSLSLDHVRTLVLDEAD 157
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 114 bits (274), Expect = 2e-24
Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+FD ++ GI G+ P+ IQ++ I + GRDVI AQ+GTGKTA F + ILQ
Sbjct: 2 SFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQ 61
Query: 359 QIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
++ R +A+I+ PTRELA+QIQ V+ ALG + + GG + I++L GV
Sbjct: 62 RLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLRRGV 121
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ V PGR+ D + R L + + +LDEAD
Sbjct: 122 EIAVVCPGRLLDHLERGTLTLEHLDMLILDEAD 154
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 114 bits (274), Expect = 2e-24
Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSIS 349
+ TF + ++++ ++ I G KP+ IQ++AI ++ D I AQ+GTGKTA F +
Sbjct: 1 MSTFAGLGIRKDYIKSIKEIGITKPTDIQEKAIPVLLKSPTDFIGLAQTGTGKTAAFGLP 60
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK--CHACIGGTNVREDIRQL 523
+L ID + QALIL+PTREL QQI+K + +++ + A GG + + L
Sbjct: 61 VLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKIDRQMNNL 120
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ H+V+ TPGR+ D+I R A+ + +K +LDEAD
Sbjct: 121 KRTTHIVIATPGRLIDLIERGAVDISHVKTVILDEAD 157
>UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Rhodobacteraceae|Rep: DEAD/DEAH box helicase domain
protein - Dinoroseobacter shibae DFL 12
Length = 508
Score = 114 bits (274), Expect = 2e-24
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
FD + L L+ G+ A P+ IQ RAI + GRDV+ AQ+GTGKTA F + +L
Sbjct: 73 FDMLGLSPRLVAGLAAQNITDPTPIQTRAIPHGLNGRDVLGIAQTGTGKTAAFGLPLLDA 132
Query: 362 I-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ + R C+ LILAPTREL QI + + A + + K +GG + I++ E
Sbjct: 133 LMKAGTKPAPRTCRGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAE 192
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G ++V TPGR+ D++ R+AL + + VLDEAD
Sbjct: 193 RGADLIVATPGRLIDLLDRKALRLSETRFLVLDEAD 228
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 114 bits (274), Expect = 2e-24
Identities = 55/154 (35%), Positives = 92/154 (59%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
++ F ++ + + ++ + + GF++P+ IQ+ +I +QG D++ QAQ+GTGKT F I +
Sbjct: 1 MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
++++ + Q+LILAPTRELA Q+ + + + GG + I+ L+ G
Sbjct: 61 IEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKG 119
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGRV D + RR L + I +LDEAD
Sbjct: 120 PQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEAD 153
>UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable
ATP-dependent RNA helicase - Lentisphaera araneosa
HTCC2155
Length = 482
Score = 113 bits (273), Expect = 3e-24
Identities = 57/151 (37%), Positives = 90/151 (59%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ LK+ +L IY G++KP+ IQ +++ +QG+D + +A++GTGKTA F+I LQ
Sbjct: 7 FQDLGLKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAKTGTGKTAAFAIPALQH 66
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
+ ++ Q LIL P REL +QI + I LG L A + G +++ G V
Sbjct: 67 LRAEVQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVKKSLHGAQV 126
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ TPGR+ D+ + L++N I + V+DEAD
Sbjct: 127 ISATPGRLIDIKEQGLLNSNCINMLVIDEAD 157
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 113 bits (272), Expect = 4e-24
Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F ++ L +L + A G+E PS IQ ++I + G ++ AQ+GTGKTA F++ +L
Sbjct: 25 SFAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLLS 84
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV 535
+ID ++ E Q L+LAPTRELA Q+ + N GG + IR L+ G
Sbjct: 85 RIDANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKRGA 144
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+VGTPGR+ D + + L + +K VLDEAD
Sbjct: 145 QVIVGTPGRMLDHLRKGTLKLDGLKALVLDEAD 177
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 113 bits (272), Expect = 4e-24
Identities = 57/152 (37%), Positives = 86/152 (56%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF+++ + +L+ I GF+ P+ +Q +AI + D+I +++G+GKTA F +SILQ
Sbjct: 4 TFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQ 63
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
+ Q LIL P RELA Q+ + + +L K A G N+ + + L GV
Sbjct: 64 LTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQILNKGVS 123
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+V GTPGRV+D I+ L I+ VLDEAD
Sbjct: 124 IVTGTPGRVFDHISHGTLSTKNIRFLVLDEAD 155
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 113 bits (272), Expect = 4e-24
Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F + L + + + G++ PS IQ +AI + G+DV+A AQ+GTGKTA F++ +L+
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 359 QIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ + + +AL+L PTRELA Q+ + V G +L + GG + I++L
Sbjct: 62 LLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLR 121
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV V+V TPGR+ D+ ++A+ N +++ VLDEAD
Sbjct: 122 HGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEAD 157
>UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila
pseudoobscura|Rep: GA19670-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1007
Score = 113 bits (272), Expect = 4e-24
Identities = 60/164 (36%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Frame = +2
Query: 146 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 325
T D + Q+ + F ++L+ +++RG+ A F P+ IQ AI + G D++ Q++SGTG
Sbjct: 16 TSDVEAGQM-KHFSALHLRRQVMRGLAAENFRTPTKIQAAAIPIALTGMDLLVQSKSGTG 74
Query: 326 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNV 502
KT + ++ LQ S + + L++ PTRELA Q+ + LG+ L + K + +GGT+V
Sbjct: 75 KTLIYVVTALQMCSLSTQHPEVLVILPTRELALQVHDIFRFLGEKLRSFKVSSFMGGTDV 134
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
D +L + HV +GTPGR+ + + L+ + +KL VLDEAD
Sbjct: 135 TRDREKLRN-CHVAIGTPGRLLQLHEKGVLNMSMVKLLVLDEAD 177
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 113 bits (271), Expect = 5e-24
Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + + +L I A G+E+PS IQ +AI + G D+I QAQ+GTGKTA F++ +L +
Sbjct: 25 FAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPMLSR 84
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVH 538
ID + RE Q LILAPTRELA Q+ L A GG + ++ L G
Sbjct: 85 IDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQGAQ 144
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++V TPGR+ D + R +T+K VLDEAD
Sbjct: 145 ILVATPGRLCDHLRRDEQLLSTVKHLVLDEAD 176
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 113 bits (271), Expect = 5e-24
Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F + L + + + G++ PS IQ +AI + G+DV+A AQ+GTGKTA F++ +L+
Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 359 QIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ + + +AL+L PTRELA Q+ + V G +L + GG + I++L
Sbjct: 62 LLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLR 121
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV V+V TPGR+ D++ + + N +++ VLDEAD
Sbjct: 122 HGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEAD 157
>UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5;
Clostridium|Rep: DEAD/DEAH box helicase-like -
Clostridium cellulolyticum H10
Length = 437
Score = 113 bits (271), Expect = 5e-24
Identities = 55/155 (35%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
+ F+ M L++ L+ + P+ IQQ+AI ++ RDVI + +GTGKT + + +
Sbjct: 3 QLFESMELEKSLVEALKKESITVPTDIQQKAIPEALKNRDVILHSSTGTGKTLAYLLPLF 62
Query: 356 QQIDTSIRECQALILAPTRELAQQI--QKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
++ +E QALIL PT ELA Q+ Q +++ + A IG N+ I +L+
Sbjct: 63 MKLSAEKKEMQALILVPTHELAIQVVRQIELLSQNSEIKATSTPIIGDVNIMRQIDKLKL 122
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H++VGTPGR+ ++I +R + A+TIK ++DEAD
Sbjct: 123 KPHIIVGTPGRILELIQKRKISAHTIKTIIIDEAD 157
>UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1;
Methanospirillum hungatei JF-1|Rep: DEAD/DEAH box
helicase-like - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 531
Score = 113 bits (271), Expect = 5e-24
Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ +F D+ L +++ I G+E+P+ IQQ I + G DV QA +GTGKTA F I
Sbjct: 3 IPSFSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPA 62
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLES 529
++ + R Q ++L P+RELA Q+ + L H GG + I+ L
Sbjct: 63 IELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSR 122
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV +++GTPGRV D I R+ L + + L VLDEAD
Sbjct: 123 GVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEAD 157
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 112 bits (270), Expect = 7e-24
Identities = 58/157 (36%), Positives = 95/157 (60%), Gaps = 5/157 (3%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F + L + LLR + ++ P+ +Q +AI + G+DV+A AQ+GTGKTA F++ +LQ
Sbjct: 2 SFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQ 61
Query: 359 QI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 523
++ S + L+L PTRELA+Q+ + IA G L+ + A GG ++ + +L
Sbjct: 62 RLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMKL 121
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV V+V TPGR+ D+ + A+ + ++ VLDEAD
Sbjct: 122 RKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEAD 158
>UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=2;
Clostridium difficile|Rep: Putative ATP-dependent RNA
helicase - Clostridium difficile (strain 630)
Length = 381
Score = 112 bits (270), Expect = 7e-24
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ TF+ + + L+ G+ P+ +Q I IQ +D++ +Q+GTGKT + + I
Sbjct: 1 MNTFEQLKISSTLIDGLKKQDITSPTEVQSLVIGNIIQNKDLLINSQTGTGKTLAYLLPI 60
Query: 353 LQQIDTSIRECQALILAPTRELAQQI--QKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
++IDTS RE QALILAPT EL QI Q ++A L+ A IG N+++ I+ ++
Sbjct: 61 FEKIDTSKRETQALILAPTHELVMQITNQVELLAKNAELSVTSLALIGEVNIQKQIKNIK 120
Query: 527 S-GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ H+V+G+ GRV D+I ++ L ++ IK VLDE D
Sbjct: 121 AVKPHIVIGSCGRVLDLIKQKKLKSHNIKTIVLDEVD 157
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 112 bits (270), Expect = 7e-24
Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+E+F+DM L +++ I + + +PS+IQ +A+ + GRD++ A++G+GKTA F+I +
Sbjct: 117 IESFNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPM 176
Query: 353 LQQ--IDTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDI 514
LQ + IR AL+LAPTRELAQQI+K V A L + K +GGTN+ +
Sbjct: 177 LQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQR 236
Query: 515 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+L +GV + V TPGR D + + + I VLDEAD
Sbjct: 237 SELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEAD 276
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 112 bits (270), Expect = 7e-24
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V+TF+++ L LL G+ F P+ IQ AI + D+I Q++SGTGKT + I++
Sbjct: 24 VKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAV 83
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIAL-GDHLNAKCHACIGGTNVREDIRQLES 529
+Q + +I + A+I+ PTRELA Q+Q L + KC A IGGT+V +D +++
Sbjct: 84 VQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNE 143
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V++GTPGR+ + R + ++L VLDEAD
Sbjct: 144 S-RVIIGTPGRLLHLYENRVFDVSKLRLLVLDEAD 177
>UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyostelium
discoideum|Rep: Putative RNA helicase - Dictyostelium
discoideum AX4
Length = 834
Score = 112 bits (270), Expect = 7e-24
Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ T+ + NL E+L I G+EKPS IQ ++I + GRD++ A++G+GKT F I +
Sbjct: 412 IRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPM 471
Query: 353 LQQI--------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
L I DT AL++APTREL QQI+K H + + +GG ++ +
Sbjct: 472 LIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIED 531
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
Q+ G +++ TPGR+ D + +R L N VLDEAD
Sbjct: 532 QAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEAD 573
>UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=2;
Aurantimonadaceae|Rep: Superfamily II DNA and RNA
helicase - Fulvimarina pelagi HTCC2506
Length = 457
Score = 112 bits (269), Expect = 9e-24
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TFD L E L R + P+ IQ+RAI + GRD++ AQ+GTGKTA F++ +L
Sbjct: 5 TFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPLLH 64
Query: 359 QIDT-----SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 523
+ T + R +ALIL+PTRELA QI + + L + GG +VR I+ L
Sbjct: 65 HLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQAL 124
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV ++V TPGR+ D++ +RA+ + +LDEAD
Sbjct: 125 ARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEAD 161
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 111 bits (268), Expect = 1e-23
Identities = 57/156 (36%), Positives = 98/156 (62%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F ++ L EL + G+E+P+ IQ +AI ++G D++A+AQ+GTGKTA+F++ I++
Sbjct: 5 SFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPIIE 64
Query: 359 QIDTS----IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
++ + R +AL+LAPTRELA Q+ + G L + + GG V I++L+
Sbjct: 65 KLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLK 124
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G ++V TPGR+ D++ ++A+ ++ VLDEAD
Sbjct: 125 RGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEAD 160
>UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=7; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 542
Score = 111 bits (268), Expect = 1e-23
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ L + LL+ + G+ P+ IQ +AI + GRD++ AQ+GTGKTA F++ IL +
Sbjct: 67 FTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 126
Query: 362 I-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ R + L+L+PTRELA QI + G H+ GG ++ L
Sbjct: 127 LAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALA 186
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+GV VVV TPGR+ D + ++ H N +++FVLDEAD
Sbjct: 187 AGVDVVVATPGRLMDHLGEKSAHLNGVEIFVLDEAD 222
>UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 407
Score = 111 bits (268), Expect = 1e-23
Identities = 73/188 (38%), Positives = 98/188 (52%), Gaps = 10/188 (5%)
Frame = +2
Query: 101 KDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPC 280
+D S D G + G T +F D+ L E L R + A GF+ PS +Q +
Sbjct: 16 RDDTSTDARAGANVGERATS----SASFGDLQLDERLTRALRAAGFDAPSPVQLACVPLG 71
Query: 281 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL--- 451
G DVIAQA+SGTGKT TF + L+++D R QAL LAPTRE A Q + + +
Sbjct: 72 RFGCDVIAQAKSGTGKTMTFVVIALERVDAGRRRTQALALAPTRECAVQTHECFVEMIEK 131
Query: 452 -----GDHLNAKCHAC--IGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIK 610
GD C +GG V+ED +L S HVVVGTPGR M+ ++ + +
Sbjct: 132 FKDMDGD-ARGGIETCLLVGGLPVKEDRARLASQPHVVVGTPGRTRQMLEEGSMACDGAR 190
Query: 611 LFVLDEAD 634
L +LDEAD
Sbjct: 191 LLILDEAD 198
>UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 53 - Arabidopsis thaliana (Mouse-ear cress)
Length = 616
Score = 111 bits (268), Expect = 1e-23
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Frame = +2
Query: 188 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 364
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 365 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
R L+LAPTRELA+Q++K L+ C GGT + + +RQL+
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDY 225
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV V VGTPGRV D++ R AL+ + ++ VLDEAD
Sbjct: 226 GVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEAD 260
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 111 bits (267), Expect = 2e-23
Identities = 53/147 (36%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Frame = +2
Query: 197 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI 376
L EL + + G+++P+ IQ+ AI ++G D++ QA +GTGKT F+I I++++
Sbjct: 7 LSLELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVEKLQKGK 66
Query: 377 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGT 553
+ +AL+L PTRELA Q+++ + L + + GGT+V++++ L++ V +++GT
Sbjct: 67 PDVKALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDILQNKNVDILIGT 126
Query: 554 PGRVYDMITRRALHANTIKLFVLDEAD 634
PGR+ D+I R+AL+ + ++ VLDE D
Sbjct: 127 PGRIKDLIDRKALNLSKVEYLVLDEFD 153
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 111 bits (267), Expect = 2e-23
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR-DVIAQAQSGTGKTATFSISILQ 358
F D+ + L + + P+ IQ++ I + + D++A A++GTGKTA F + +LQ
Sbjct: 5 FSDLGINLALQQRLNDLKIITPTEIQEKVIPIVLNDKEDIVALAKTGTGKTAAFGLPLLQ 64
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGV 535
ID + QA+ILAPTREL QQI +I+ +H + A + GG ++ I +L+
Sbjct: 65 LIDVNNDAIQAIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGIPIKPQIERLKEAT 124
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNV 643
H++V TPGR+ D++ R A+ +I F+LDEAD V
Sbjct: 125 HIIVATPGRLADLVKREAIDIKSISYFILDEADEMV 160
>UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Algoriphagus sp. PR1|Rep: DEAD/DEAH box helicase-like
protein - Algoriphagus sp. PR1
Length = 399
Score = 111 bits (267), Expect = 2e-23
Identities = 55/152 (36%), Positives = 90/152 (59%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F ++L ++R + G+E + IQ+++I ++GRD++ + +G+GKT F I I++
Sbjct: 56 SFASLSLDSVMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIPIIE 115
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
+ + ALI+ PTRELA QI + +L + IGGTN+ D++ L +H
Sbjct: 116 HALKNPGQFTALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNINTDMKVLSRKLH 175
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+VGTPGR+ D+ R+ L N +K VLDE D
Sbjct: 176 VIVGTPGRLLDLTNRKLLKLNQVKTLVLDEFD 207
>UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent
RNA helicase; n=4; Bacteroidetes|Rep: RhlE-like DEAD box
family ATP-dependent RNA helicase - Gramella forsetii
(strain KT0803)
Length = 455
Score = 111 bits (267), Expect = 2e-23
Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F D+NL L + F+ P+ IQ++A + GRDV+ AQ+GTGKT + + +L+
Sbjct: 10 SFQDLNLNTPLRNALEDLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKTFAYLLPLLR 69
Query: 359 QIDTSIREC-QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ S ++ + LI+ PTREL Q+ + + L ++N + GG N+ + L G+
Sbjct: 70 MLKYSEQKNPRILIMVPTRELVVQVVEEIEKLAKYINLRVAGVYGGVNINTQHQDLMQGL 129
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VV TP R+YD++ RRA+ +I+ FV+DE D
Sbjct: 130 DIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVD 162
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 111 bits (267), Expect = 2e-23
Identities = 59/154 (38%), Positives = 90/154 (58%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+E+F + +++ +LR I FE+P+ IQ+ AI ++G+D+I A +G+GKT F I
Sbjct: 1 MESFKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGI 60
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
+Q+I+ +AL+L PTRELA+Q+Q + H + GG + IRQLE
Sbjct: 61 IQKIEKG-NGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQIRQLER- 118
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVV TPGR+ D I R + +++ VLDEAD
Sbjct: 119 ADVVVATPGRLLDHIERGTIDLGDVEILVLDEAD 152
>UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase
MJ0669; n=11; cellular organisms|Rep: Probable
ATP-dependent RNA helicase MJ0669 - Methanococcus
jannaschii
Length = 367
Score = 111 bits (267), Expect = 2e-23
Identities = 58/152 (38%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR-DVIAQAQSGTGKTATFSISILQ 358
F+++NL + +L I GFEKP+ IQ + I + +++AQA++G+GKTA+F+I +++
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
++ + +A+IL PTRELA Q+ + +L + N K GG + I+ L++ +
Sbjct: 68 LVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA-N 125
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VVGTPGR+ D I R L+ +K F+LDEAD
Sbjct: 126 IVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 111 bits (266), Expect = 2e-23
Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
++ F ++ + E + G + + IQ++AI + G+D+I QA++GTGKT F + I
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 353 LQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
L++ID + QALI+APTRELA QI ++ L + A GG +V + +R+L+
Sbjct: 64 LEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKG 123
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+VV TPGR+ D I R + + + VLDEAD
Sbjct: 124 NTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEAD 158
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 111 bits (266), Expect = 2e-23
Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D + +L + G++ P+ IQ+ AI + GRD++ QAQ+GTGKTA F++ ++++
Sbjct: 53 FLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112
Query: 362 I-DTSIRECQALILAPTRELAQQIQKVVIAL-GDHLNAKCHACIGGTNVREDIRQLESGV 535
+ D + L++ PTRELA Q+ + + + N K A GGT+ R I L+ V
Sbjct: 113 LADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKV 172
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVVGTPGR+ D I + N+I VLDEAD
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKVNSINCLVLDEAD 205
>UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=1; Hyphomonas neptunium ATCC 15444|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family -
Hyphomonas neptunium (strain ATCC 15444)
Length = 708
Score = 111 bits (266), Expect = 2e-23
Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 11/159 (6%)
Frame = +2
Query: 191 MNLKEEL---LRG-IYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
MNL E L LR I+ G+E + +Q A P ++GRD++ A++G+GKT F ++I
Sbjct: 1 MNLPETLPAALRAAIHERGYETLTEVQAAATAPELEGRDLLVSARTGSGKTVAFGLAIAN 60
Query: 359 QI----DTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 517
++ DT + LI+APTRELA Q+ + + L + NA+ C+GG ++R++ R
Sbjct: 61 ELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRWLYANTNAEIATCVGGMDMRDERR 120
Query: 518 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
LE G H+VVGTPGR+ D I R + + I+ VLDEAD
Sbjct: 121 ALERGAHIVVGTPGRLVDHINRGSFDTSAIRAVVLDEAD 159
>UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3;
Thermoprotei|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 434
Score = 111 bits (266), Expect = 2e-23
Identities = 60/151 (39%), Positives = 89/151 (58%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+++ +K+ +L + GFEK IQ+ AI + GRDV+ QA +GTGKT +SIS+LQ+
Sbjct: 4 FEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISMLQE 63
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
I Q LI+APTRELA QI + V + + A GG ++ + L+ G +
Sbjct: 64 IKEG-GGIQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQLDALKRGAEI 122
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+V TPGR+ D I R ++ + + VLDEAD
Sbjct: 123 LVATPGRLIDHIKRGSISIDRVTHLVLDEAD 153
>UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=23;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - Bradyrhizobium japonicum
Length = 530
Score = 110 bits (265), Expect = 3e-23
Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Frame = +2
Query: 152 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 331
D + ++ +F D L E + R + + P+ IQ + I + GRDV+ AQ+GTGKT
Sbjct: 8 DMERTHLLTSFQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKT 67
Query: 332 ATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 496
A+F++ IL + I + + L+L+PTREL+ QI A G H+ IGG
Sbjct: 68 ASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGV 127
Query: 497 NVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ +R L GV V+V TPGR+ D++ L +++ VLDEAD
Sbjct: 128 PMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEAD 173
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 110 bits (265), Expect = 3e-23
Identities = 60/151 (39%), Positives = 87/151 (57%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
FD L + L G+ G+E + +Q+ + QG DVI QA++G+GKTA F + IL++
Sbjct: 7 FDSWELPDALRTGLAQLGWEFATQVQRDTVPIARQGTDVIGQARTGSGKTAAFGLPILER 66
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
S + QAL+LAPTRELA Q+ + L + GGT++ + + L GV +
Sbjct: 67 CQPS-GKLQALVLAPTRELANQVAQEFELLQGNAGLSIVTVYGGTDLEKQAKTLAKGVDI 125
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGRV DM R + N+ K+ LDEAD
Sbjct: 126 IVGTPGRVMDMNERGHIDLNSPKMLCLDEAD 156
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 110 bits (265), Expect = 3e-23
Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ TF ++ L + + + ++ P+ IQ + I ++GRDV+ AQ+GTGKTA ++ I
Sbjct: 1 MNTFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPI 60
Query: 353 LQQIDTSIREC-----QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 517
L Q+ + R+ AL+LAPTRELA QI A G HL + GG ++
Sbjct: 61 LNQLGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQVK 120
Query: 518 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
L+ G H++V TPGR+ D++ + + N +++FVLDEAD
Sbjct: 121 ALKRGAHILVATPGRLLDLMNQGHIKLNQLEVFVLDEAD 159
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 110 bits (265), Expect = 3e-23
Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F ++ + E+ +GI GF + + IQ++A+ + G+DV QAQ+GTGKTATF ISI +
Sbjct: 3 FTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIFTK 62
Query: 362 IDTSIR-----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ + + +ALILAPTREL QI+K ALG + A GG + + L+
Sbjct: 63 LLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDALK 122
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+G +V+GTPGR+ D + ++ ++ V+DEAD
Sbjct: 123 AGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEAD 158
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 110 bits (264), Expect = 3e-23
Identities = 61/149 (40%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Frame = +2
Query: 191 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT 370
M +++L G+ GF++PS IQ +AI G D+I +A+SGTGKT F I L+ ID
Sbjct: 1 MGFSQKILDGLSVCGFQRPSPIQLKAIPLGRCGFDLIMRAKSGTGKTLVFCIISLEMIDI 60
Query: 371 SIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGVHVVV 547
I Q LILAPTRE+A QI +V ++G + + K IGG + D +++ + + V
Sbjct: 61 DISSVQVLILAPTREIAVQIAQVFSSVGCEIKDLKVEVFIGGLAIENDKKKV-NNCQIAV 119
Query: 548 GTPGRVYDMITRRALHANTIKLFVLDEAD 634
G PGR+ +I + L ++LFVLDEAD
Sbjct: 120 GAPGRIRHLIDKGFLKVENVRLFVLDEAD 148
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 110 bits (264), Expect = 3e-23
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + + E +L+ I G++ P+ IQ AI + G D++ AQ+GTGKTA F+I +LQ
Sbjct: 84 FRSLAIIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVLQL 143
Query: 362 IDT-----SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
++ R+ ++LI+ PTRELA QI + A G H GG N L+
Sbjct: 144 LNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTASLQ 203
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G+ +++ TPGR+ D++ + LH I+ FVLDEAD
Sbjct: 204 KGIDILIATPGRLLDLMNQGHLHLRNIEFFVLDEAD 239
>UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Kineococcus radiotolerans SRS30216|Rep: DEAD/DEAH
box helicase domain protein - Kineococcus radiotolerans
SRS30216
Length = 590
Score = 110 bits (264), Expect = 3e-23
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
Frame = +2
Query: 86 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVE-TFDDMNLKEELLRGIYAYGFEKPSAIQQ 262
++GP + S+ P + + +V E TF ++ L EEL+ + G P AIQ
Sbjct: 116 RSGPPRSPRSF-APSATEQALTAAEQIEVAESTFAELGLPEELVAALERRGMTAPFAIQS 174
Query: 263 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC-----QALILAPTRELAQQ 427
R + I GRD++ +A++G+GKT F + +L ++ R + L+L PTRELA Q
Sbjct: 175 RTLPDGIAGRDILGRARTGSGKTLGFGLPMLARLAQQKRPRITGAPRGLVLVPTRELAMQ 234
Query: 428 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTI 607
+ + LGD L+ + +GG I L+ G+ V++ TPGR+ D+I R A+ +
Sbjct: 235 VADALRPLGDSLDLRLSVVVGGVPYGRQIAALQRGIDVLIATPGRLVDLIDRDAVSLAEV 294
Query: 608 KLFVLDEAD 634
+ VLDEAD
Sbjct: 295 DVAVLDEAD 303
>UniRef50_Q4S6B9 Cluster: Chromosome 9 SCAF14729, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 9 SCAF14729, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 457
Score = 109 bits (263), Expect = 5e-23
Identities = 64/171 (37%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPCIQGRDVIAQAQSGTGKTATFSI 346
V++F+++ LK ELL+G+Y GF +PS IQ+ A+ M +++IAQ+QSGTGKTA F +
Sbjct: 37 VKSFEELRLKPELLKGVYQMGFNRPSRIQENALPLMMAQPAQNLIAQSQSGTGKTAAFCL 96
Query: 347 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQL 523
++L ++ + + Q L +APT ELA QI +V+ +G + + + G + +R
Sbjct: 97 AMLGIVNPADKWPQCLCIAPTYELALQIGQVLEQMGRFCADVRLVYAVRGNRI---VRGT 153
Query: 524 ESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADXNVVQRXSRTRSM 673
+ +VVGTPG VYD + + L I +FVLDEAD + + R +S+
Sbjct: 154 KVQEQIVVGTPGTVYDWCAKQKVLDPKKITMFVLDEADVMISMQGHRDQSI 204
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 109 bits (263), Expect = 5e-23
Identities = 53/153 (34%), Positives = 89/153 (58%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
++F + L +E+ R + G+E P+ +Q I +Q +D++ ++Q+G+GKTA+F I +
Sbjct: 4 KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ ++ + QAL+L PTRELA Q+++ + +G K A G + +L+
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKT 123
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+VVGTPGRV D I + L +K V+DEAD
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERLKYLVIDEAD 156
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 109 bits (263), Expect = 5e-23
Identities = 63/161 (39%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
Frame = +2
Query: 164 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 343
D+ TF D+N+ + +L + G+ P+ IQ AI +QGRD++ AQ+G+GKTA F
Sbjct: 40 DENKVTFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFV 99
Query: 344 ISILQQID--TSI-RECQALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTNVRED 511
I +L ++ TS + +ALIL PTRELAQQ+ V D C +GG
Sbjct: 100 IPVLDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQ 159
Query: 512 IRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
I L+ GV V+V TPGR+ D I + +++++ VLDEAD
Sbjct: 160 ITALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEAD 200
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 109 bits (263), Expect = 5e-23
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 7/158 (4%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D NL ++R I GF S IQ A+ + GRD+I +AQ+GTGKTA F I++LQ+
Sbjct: 100 FHDFNLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQK 159
Query: 362 I------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 523
+ + E +ALILAPTRELA QI K L + + +GG + + QL
Sbjct: 160 LLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQL 219
Query: 524 ESG-VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
E+ V VVV TPGR+ D + + ++ + +++ V+DEAD
Sbjct: 220 ENEVVDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEAD 257
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 109 bits (262), Expect = 6e-23
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F M L ++ L G+ G+ P+ IQ++AI ++G D+IA A++G+GKTA + + I+ +
Sbjct: 15 FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINR 74
Query: 362 IDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
++T E ++LI+ PTRELA Q KV LG N K IGG+ + + L SG
Sbjct: 75 LETHSTEGVRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSGPD 134
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++V TPGR+ ++ + N +++ DEAD
Sbjct: 135 IIVATPGRLTFILEGANISLNRVEMVCFDEAD 166
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 109 bits (262), Expect = 6e-23
Identities = 59/152 (38%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ +NL L R I G+ + IQ++AI + +D+I ++ +GTGKT F + ILQ
Sbjct: 3 FNTLNLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQN 62
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVH 538
++T +++ QA+IL PT ELA QI + V +L I GG++++ I L +
Sbjct: 63 LNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS-N 121
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++VGTPGR+ D I R+ L + IK VLDEAD
Sbjct: 122 IIVGTPGRIADHINRKTLRLDKIKTIVLDEAD 153
>UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocystis
pacifica SIR-1|Rep: DEAD/DEAH box helicase -
Plesiocystis pacifica SIR-1
Length = 1390
Score = 109 bits (262), Expect = 6e-23
Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 4/161 (2%)
Frame = +2
Query: 164 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 343
D ET+D+M L E + + A G+ P+ +Q R IQG DV+ Q+Q+G+GKT F
Sbjct: 152 DPAPETWDEMALPEHVRNAVDAAGWTAPTKVQARTYETMIQGTDVLVQSQTGSGKTGAFC 211
Query: 344 ISIL----QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 511
+ L Q D + Q ++L PTRELA+Q+ ++ L GGT +
Sbjct: 212 LPWLANRFQPGDAAETGVQLIVLLPTRELAKQVCNELVRLAIETPVDVLPVYGGTAMNPQ 271
Query: 512 IRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ L GVH VVGTPGRV D I R++L + ++ VLDE D
Sbjct: 272 LDALARGVHAVVGTPGRVLDHIRRKSLDLSKVRTVVLDECD 312
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 109 bits (261), Expect = 8e-23
Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR--DVIAQAQSGTGKTATFSI 346
++TF + + ++++G+ GF + +Q++ I+P + R D++ AQ+GTGKTA F I
Sbjct: 1 MKTFAEFEINTDIMKGLDGLGFSVMTPVQEK-IIPIVLNRQTDLVGLAQTGTGKTAAFGI 59
Query: 347 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQL 523
++Q DT ++ QAL+L PTREL Q+ + +G ++ K GG ++ +L
Sbjct: 60 PLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEEL 119
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G VVV TPGR++D+I R A+ + + VLDEAD
Sbjct: 120 RKGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEAD 156
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 109 bits (261), Expect = 8e-23
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ NL+ L+ + FEKP+ IQ R I ++ ++I Q+Q+GTGK+ F + ++Q
Sbjct: 6 FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGD-HLNAKCHACIGGTNVREDIRQLESGVH 538
ID+ I+E QA+++APTRELAQQ+ L IGGT++ +D ++ +
Sbjct: 66 IDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNAQPQ 125
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+++GTP R+ D+ LH + V+DEAD
Sbjct: 126 LIIGTPTRINDLAKTGHLHVHLASYLVIDEAD 157
>UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;
Sulfurovum sp. NBC37-1|Rep: ATP-independent RNA helicase
DbpA - Sulfurovum sp. (strain NBC37-1)
Length = 453
Score = 109 bits (261), Expect = 8e-23
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Frame = +2
Query: 194 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 373
N+ E LL + GF + IQQ++I P ++G+D++AQ+++G+GKT F I + D
Sbjct: 9 NIPEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIPAVMGTDVK 68
Query: 374 IRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQLESGVHVVVG 550
+ Q +++ PTRELA+Q+ + + + N K GG +R L G H+++G
Sbjct: 69 SNKPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLAKGAHILIG 128
Query: 551 TPGRVYDMITRRALHANTIKLFVLDEAD 634
TPGR+ D + + L +IK VLDEAD
Sbjct: 129 TPGRIQDHLAKGTLTLESIKTLVLDEAD 156
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 109 bits (261), Expect = 8e-23
Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D +L +L + ++ P+ IQQ AI +QG+D++A A++GTGKTA F++ IL++
Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62
Query: 362 IDTSIR-----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ + R + + L+L PTRELA Q+ + + + L K GG + I+ L+
Sbjct: 63 LSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQALK 122
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
SG+ +VV TPGR+ D+ + AL I V DEAD
Sbjct: 123 SGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEAD 158
>UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3;
Piroplasmida|Rep: DEAD box RNA helicase, putative -
Theileria parva
Length = 501
Score = 109 bits (261), Expect = 8e-23
Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR--DVIAQAQSGTGKTATFSISIL 355
+ + L +LL+GI GF KPS IQQ A+ P I G ++IAQA++G+GKTATF++++L
Sbjct: 101 WSQLPLSPDLLKGIQNMGFAKPSKIQQCAL-PLILGSCTNIIAQAKNGSGKTATFALAML 159
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+++ ++ QAL + PTRELA Q +V+ LG KC + ED Q
Sbjct: 160 SKVNVNVPLVQALCICPTRELATQNVQVIQKLGQFTQIKCFLGVPQCPRYEDNDQ----Y 215
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQR 652
H+ VGTPG+ D + +R ++ + + VLDEAD + Q+
Sbjct: 216 HLYVGTPGKTMDFLKKRIMNVTNVVMLVLDEADELINQQ 254
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 109 bits (261), Expect = 8e-23
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 1/196 (0%)
Frame = +2
Query: 50 SERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYA 229
S+ +D P K+ P+ D+ + T+ D +V F D+ + +++
Sbjct: 68 SDHDDDDDPSADKDSPAADEEQDE----KKVATIADDGKKV--EFSDLGVIPQIVEACTN 121
Query: 230 YGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 409
GF+ P+ IQ +AI +Q RDVI AQ+G+GKTA F+I ILQ + + + A +LAPT
Sbjct: 122 MGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPT 181
Query: 410 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRR 586
RELA QI + V ALG + + +GG ++ L HV+V TPGR+ D + +
Sbjct: 182 RELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLENTK 241
Query: 587 ALHANTIKLFVLDEAD 634
++ V+DEAD
Sbjct: 242 GFSLRGLQYLVMDEAD 257
>UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellular
organisms|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 793
Score = 108 bits (260), Expect = 1e-22
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ L E ++R I G+E P+ IQ +AI ++G DV+ AQ+GTGKTA+F++ +LQ+
Sbjct: 293 FADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQK 352
Query: 362 IDTS---IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
+ S R ++LIL PTRELA Q+ + G +L IGG ++ E L G
Sbjct: 353 LAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGGESMAEQRDVLNRG 412
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V V++ TPGR+ D+ R L V+DEAD
Sbjct: 413 VDVLIATPGRLLDLFGRGGLLLTQTSTLVIDEAD 446
>UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_383_7421_6129 - Giardia lamblia ATCC
50803
Length = 430
Score = 108 bits (260), Expect = 1e-22
Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + LK+ELL G+ GF++ + +Q+ AI + RDV+A+A++GTGKT +F I ILQ
Sbjct: 23 FSSLGLKQELLMGLTQEGFQQLTPVQELAIPHILARRDVVARAKNGTGKTGSFLIPILQM 82
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL---NAKCHACIGGTNVREDIRQLESG 532
++ + QAL+L TRELA Q KV L ++ + IGG ++ ED +
Sbjct: 83 VNPAKDHIQALVLLHTRELAMQTAKVAKTLSKNMPDVTGRIMCAIGGVSIAEDRERAREK 142
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQRXSRT 664
VV+ TPGR+ +I L+ + VLDEAD + Q R+
Sbjct: 143 PLVVLATPGRLQQLIDEEILNFRDCSIVVLDEADMLLSQNFIRS 186
>UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD
(Asp-Glu-Ala-Asp) box polypeptide 21a; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a -
Strongylocentrotus purpuratus
Length = 657
Score = 108 bits (259), Expect = 1e-22
Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Frame = +2
Query: 86 KNGPSKDQGSY-DGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQ 262
KNG + G + P G +D + + + F + ++ + + ++A G + IQ
Sbjct: 71 KNGEVQQNGIVKEKPSSSKQGEVDEETQEKIGAFSNFGIRPKTIEKLHAKGVKYLFPIQA 130
Query: 263 RAIMPCIQGRDVIAQAQSGTGKTATFSISIL---QQI-DTSIRECQALILAPTRELAQQI 430
+ P G DVIAQA++GTGKT +F + ++ QQ S R+ L LAPTRELA+QI
Sbjct: 131 QTFKPIDDGFDVIAQARTGTGKTLSFVLPLVEKWQQFPQKSGRQPIILALAPTRELAKQI 190
Query: 431 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIK 610
+ A+G HL+ C GGT+ + G+ VVVGTPGR+ D I + L + +K
Sbjct: 191 SEYFEAIGPHLSTTC--IYGGTSYWPQESAIRRGLDVVVGTPGRILDYIRKNTLDLSKLK 248
Query: 611 LFVLDEAD 634
VLDE D
Sbjct: 249 HVVLDEVD 256
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 108 bits (259), Expect = 1e-22
Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F E+++ + G+EK + IQQ+AI +G D+ A AQ+GTGKTA FS+ ++Q
Sbjct: 2 SFASQGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLIQ 61
Query: 359 QI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 523
Q+ S + +ALI APTRELA+QI + A + N A GG + R L
Sbjct: 62 QLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERML 121
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
E+GV ++V TPGR+ + I + I+ V DEAD
Sbjct: 122 ENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEAD 158
>UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 473
Score = 108 bits (259), Expect = 1e-22
Identities = 57/152 (37%), Positives = 86/152 (56%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF +MNL LL + KP+ +Q +AI + G D+IA AQ+G+GKT F++S+L
Sbjct: 34 TFQEMNLAPVLLPALTKMKISKPTPVQSQAIPASLDGSDIIAIAQTGSGKTLAFALSLLT 93
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
+ E + LIL P+RE+AQQI KV + L + IGGT + QL+
Sbjct: 94 TLQKK-PEARGLILVPSREMAQQIYKVFLELCAEMPVSVCLAIGGTTGSKQANQLKKNPR 152
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+++ TPGR+ D ++ L +++ VLDEAD
Sbjct: 153 LIIATPGRMNDHLSGNKLLLQNVEVIVLDEAD 184
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 108 bits (259), Expect = 1e-22
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI-QGRDVIAQAQSGTGKTATFSIS 349
++ F + L+ + + + A GF++PS IQ++AI + Q D+I QAQ+GTGKTA F +
Sbjct: 1 MDKFTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLP 60
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
I+Q+I+ +++ QALIL PTRELA Q+ + + + GG + + R L+
Sbjct: 61 IVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKK 120
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV +VV TPGR I L ++++ VLDEAD
Sbjct: 121 GVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEAD 155
>UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqfR;
n=12; Bacillaceae|Rep: Probable ATP-dependent RNA
helicase yqfR - Bacillus subtilis
Length = 438
Score = 108 bits (259), Expect = 1e-22
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ LK ++ ++ GF +P+ IQ+R I ++ VI Q+Q+GTGKT + + +L +
Sbjct: 6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNK 65
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIAL-----GDHLNAKCHACIGGTNVREDIRQLE 526
ID + Q +I APTRELA QI + + + G + +KC IGGT+ ++ I +L+
Sbjct: 66 IDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCF--IGGTDKQKSIDKLK 123
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+VVGTPGR+ D+I +AL + + V+DEAD
Sbjct: 124 IQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEAD 159
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 107 bits (258), Expect = 2e-22
Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ + E+LR I G++ + +QQ+AI +G DV+A AQ+GTGKTA F++ ILQ+
Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62
Query: 362 IDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+ Q ALIL PTRELA Q+ + A H+N GG + ++L+
Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQKLK 122
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G ++V TPGR+ + I L + ++ VLDEAD
Sbjct: 123 QGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEAD 158
>UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2;
Ostreococcus|Rep: ATP-dependent RNA helicase -
Ostreococcus tauri
Length = 683
Score = 107 bits (257), Expect = 2e-22
Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 8/158 (5%)
Frame = +2
Query: 185 DDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI 364
D+ + E ++ + G + IQQ + P + G+DV+ +A++GTGKT FS+ +++++
Sbjct: 28 DNFGMSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIEKL 87
Query: 365 DTS--------IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 520
++ R + ++LAPTRELA+Q++ + L+ C GGT + + +
Sbjct: 88 LSNGRGSGGRGYRNPKCIVLAPTRELAKQVENEIFITAPTLDTAC--VYGGTPIGQQESK 145
Query: 521 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
L GV +VVGTPGR+ D++ RRAL + I+ VLDEAD
Sbjct: 146 LRRGVDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEAD 183
>UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;
Fungi/Metazoa group|Rep: ATP-dependent RNA helicase
drs-1 - Neurospora crassa
Length = 829
Score = 107 bits (257), Expect = 2e-22
Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ +F +M+L +LRG+ + GF KP+ IQ + I + G+DV+ A +G+GKTA F + I
Sbjct: 292 MSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPI 351
Query: 353 LQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 523
L+++ + + +IL PTRELA Q V + L H + K +GG +++ +L
Sbjct: 352 LERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAEL 411
Query: 524 ESGVHVVVGTPGRVYDMITRRALHA-NTIKLFVLDEAD 634
VV+ TPGR D + A A +TI++ VLDEAD
Sbjct: 412 RLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEAD 449
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 107 bits (257), Expect = 2e-22
Identities = 52/151 (34%), Positives = 94/151 (62%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
++ + L LL+ I G++ PS +Q +I + G++++ ++++GTGKTA++ + +L
Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNM 169
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
I++S Q +IL P RELA QI + V + + +GGT++++DI ++ +GVHV
Sbjct: 170 INSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHV 229
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGR+ D++ +R + + V DEAD
Sbjct: 230 MVGTPGRIVDLVEKRVGTLSKRVILVFDEAD 260
>UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4;
Protostomia|Rep: ATP-dependent RNA helicase bel -
Drosophila melanogaster (Fruit fly)
Length = 798
Score = 107 bits (257), Expect = 2e-22
Identities = 64/169 (37%), Positives = 92/169 (54%), Gaps = 15/169 (8%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ +FDD+ L E + + ++KP+ +Q+ AI I GRD++A AQ+G+GKTA F + I
Sbjct: 294 ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 353
Query: 353 LQQI--------DTSIRECQ-------ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 487
L Q+ S R+ L+LAPTRELA QI + +
Sbjct: 354 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 413
Query: 488 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GG N E +R+L+ G H++V TPGR+ DMITR + I+ VLDEAD
Sbjct: 414 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEAD 462
>UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: ATP-dependent RNA
helicase - Entamoeba histolytica HM-1:IMSS
Length = 450
Score = 107 bits (256), Expect = 3e-22
Identities = 54/154 (35%), Positives = 85/154 (55%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ TFD + +K+ LL + +G KP+ IQQ I P + +V+ A++G+GKTA F++ I
Sbjct: 29 LNTFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPI 88
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
+ + T AL+L PTRELA QI A G +N + +GG +V + L
Sbjct: 89 IHHLSTDPYTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVDVIRILHHLSGS 148
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
HV++ TPG++ +I ++ K +LDEAD
Sbjct: 149 PHVIIATPGKLVSLIDHLPFSFDSAKFLILDEAD 182
>UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28;
Alphaproteobacteria|Rep: Cold-shock dead-box protein A -
Bradyrhizobium japonicum
Length = 650
Score = 107 bits (256), Expect = 3e-22
Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Frame = +2
Query: 209 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ 388
L R + +++P+ +Q + GRD++ AQ+G+GKT + +++ + + I +
Sbjct: 10 LARALAERNYDRPTPVQLAVLTEEAAGRDLLVSAQTGSGKTLAYGLALAKDLLDGIERFE 69
Query: 389 ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 550
ALI+APTRELA Q+Q+ + L +H + + +C+GG + R + R+L +G H+VVG
Sbjct: 70 RAGAPLALIVAPTRELALQVQRELAWLYEHADGRVVSCVGGMDPRREQRELAAGAHIVVG 129
Query: 551 TPGRVYDMITRRALHANTIKLFVLDEAD 634
TPGR+ D + R L + +K VLDEAD
Sbjct: 130 TPGRLCDHLRRGRLDISELKAVVLDEAD 157
>UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=2; Alteromonadales|Rep: ATP-dependent RNA
helicase, DEAD box family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 399
Score = 107 bits (256), Expect = 3e-22
Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F +L E ++ + G+++P+ IQ+ I I G D++ AQ+GTGKTA FS+ I+ +
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 362 -----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
ID + ++LIL PTRELA QI + + D L K GG + + +E
Sbjct: 64 FGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIE 123
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G+ ++V TPGR+ D+I ++ +++FVLDEAD
Sbjct: 124 LGLDILVATPGRLLDLIETGDINFKALEVFVLDEAD 159
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 107 bits (256), Expect = 3e-22
Identities = 54/155 (34%), Positives = 94/155 (60%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F +L ++ + +KP+ IQ R I ++GRD+I Q+Q+GTGKT +F + I+Q
Sbjct: 4 FSHFDLHPFVVEALEDARIKKPTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLPIVQN 63
Query: 362 IDTSIRECQALILAPTRELAQQI----QKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
++ ++E QA+I+APTRELA QI + +++ D++ K GG + I +++
Sbjct: 64 VNPELQEMQAIIVAPTRELAWQIHEELKSILVKQPDYI--KTSLITGGMDRERQIGRVKV 121
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+V+GTPGR+ D+ +AL + +K +++DEAD
Sbjct: 122 SPQIVIGTPGRILDLFKEQALKPHFVKHYIIDEAD 156
>UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13;
Proteobacteria|Rep: DEAD/DEAH box helicase-like -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 422
Score = 107 bits (256), Expect = 3e-22
Identities = 57/147 (38%), Positives = 83/147 (56%), Gaps = 6/147 (4%)
Frame = +2
Query: 212 LRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT----SIR 379
LR I G+ P+AIQ +AI + GRDV+ AQ+G+GKTA F++ +LQQ+ + R
Sbjct: 17 LRAIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFALPMLQQLANAPTGTPR 76
Query: 380 ECQALILAPTRELAQQIQKVVIALGDHL--NAKCHACIGGTNVREDIRQLESGVHVVVGT 553
+ LIL PTRELA Q+ + + +L K GG ++ + L G +VV T
Sbjct: 77 PTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSINPQMMNLRGGADIVVAT 136
Query: 554 PGRVYDMITRRALHANTIKLFVLDEAD 634
PGR+ D++ AL + + VLDEAD
Sbjct: 137 PGRLLDLLEHNALKISEVSTLVLDEAD 163
>UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 783
Score = 107 bits (256), Expect = 3e-22
Identities = 54/161 (33%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
Frame = +2
Query: 164 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 343
++ + TF++++L LL+ + GF +P+ IQ +AI + G+D++A A +G+GKTA F
Sbjct: 186 EEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFL 245
Query: 344 ISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 514
+ +L+++ D+ R + LIL PTRELA Q Q V+ L N +GG + +
Sbjct: 246 LPVLERLLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQE 305
Query: 515 RQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEAD 634
+L VV+ TPGR+ D ++ + + +++ +LDEAD
Sbjct: 306 VELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEAD 346
>UniRef50_Q8SSD2 Cluster: ATP-DEPENDENT RNA HELICASE INVOLVED IN
mRNA EXPORT FROM THE NUCLEUS; n=1; Encephalitozoon
cuniculi|Rep: ATP-DEPENDENT RNA HELICASE INVOLVED IN
mRNA EXPORT FROM THE NUCLEUS - Encephalitozoon cuniculi
Length = 425
Score = 107 bits (256), Expect = 3e-22
Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Frame = +2
Query: 170 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS 349
V E F DM L +ELL+ IY GFEKPS IQ+ AI ++G +V+ Q++SGTGKT ++
Sbjct: 49 VAEHFSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCG 108
Query: 350 ILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+L +T I E Q +++ PTREL+ Q+ +V+ L L K + + + + I
Sbjct: 109 VLG--NTKIGERTQVMVVTPTRELSTQVTEVISGLAGPLGIKVFSAL-KNKITDSI---- 161
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G VVVG+PG + ++ L+ +K+ VLDEAD
Sbjct: 162 -GEEVVVGSPGTILKLMELGKLNYKGVKMIVLDEAD 196
>UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;
n=34; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
10 - Arabidopsis thaliana (Mouse-ear cress)
Length = 456
Score = 107 bits (256), Expect = 3e-22
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 13/170 (7%)
Frame = +2
Query: 164 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 343
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 344 ISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 487
I ILQ + + + + A +L+PTRELA QI + ALG ++ +C +
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLV 124
Query: 488 GGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEAD 634
GG + + L HV+V TPGR++D M + ++K VLDEAD
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEAD 174
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 106 bits (255), Expect = 4e-22
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR-DVIAQAQSGTGKTATFSISILQ 358
F NL +L+ + F++PS IQ AI P IQ + D+IA +Q+G+GKTAT +I I
Sbjct: 17 FITFNLDPLILKALDKMNFKEPSRIQTEAI-PLIQKKQDLIALSQTGSGKTATCAIPICN 75
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
+++T + + QALI+ PTRELA Q +G + K A GG + +L+ GV
Sbjct: 76 RVNTELTDIQALIIVPTRELALQYATETQKIGKYKGVKAFAIFGGEDSALQQSKLKHGVQ 135
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+V TPGR+ D I R + + ++ +LDEAD
Sbjct: 136 VLVATPGRLIDFIYSRQIDLSHVETLILDEAD 167
>UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3;
Sphingomonadales|Rep: DNA and RNA helicase - Zymomonas
mobilis
Length = 492
Score = 106 bits (255), Expect = 4e-22
Identities = 60/155 (38%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SIS 349
+F D+ L +ELL+ + G+E+P+ +Q AI + RD+IA AQ+GTGKTA+F I
Sbjct: 2 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMID 61
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
IL R ++LIL PTRELA Q+ + G + IGG + E LE
Sbjct: 62 ILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEK 121
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV V++ TPGR+ D+ R + ++ ++ V+DEAD
Sbjct: 122 GVDVLIATPGRLLDLFERGKILLSSCEMLVIDEAD 156
>UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1;
Thiomicrospira crunogena XCL-2|Rep: ATP-dependent RNA
helicase - Thiomicrospira crunogena (strain XCL-2)
Length = 401
Score = 106 bits (255), Expect = 4e-22
Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 3/155 (1%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF++++L +LL I + KP+ IQ AI + +DV+A A +GTGKTA F + LQ
Sbjct: 2 TFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPALQ 61
Query: 359 QI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+ R+ + LILAPTRELA QI KVV LG H + + GG + + L+S
Sbjct: 62 FLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVTGGFASDKQLEILQS 121
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ ++V TPGR+ +++++ + + I+L ++DEAD
Sbjct: 122 KIDILVATPGRLLNIMSKEFIDLSDIELLIIDEAD 156
>UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein;
n=22; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain ANA-3)
Length = 491
Score = 106 bits (255), Expect = 4e-22
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + L L++ + G+ P+ IQ +AI + G++V+A AQ+GTGKTA+F + +L +
Sbjct: 3 FSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 362 IDTS--IR--ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+ IR +A+IL PTRELA Q+++ + +L A GG + ++L
Sbjct: 63 FADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV ++V TPGR+ DM T+RA+ + + + VLDEAD
Sbjct: 123 GVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEAD 157
>UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX27;
n=34; Bilateria|Rep: Probable ATP-dependent RNA helicase
DDX27 - Homo sapiens (Human)
Length = 796
Score = 106 bits (255), Expect = 4e-22
Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Frame = +2
Query: 131 GMDPGTLDTDWDQVVE--TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIA 304
G + G D Q E +F DMNL LL+ I A GF++P+ IQ+ I + G+D+ A
Sbjct: 201 GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICA 260
Query: 305 QAQSGTGKTATFSISILQQIDTSIREC---QALILAPTRELAQQIQKVVIALGDHLNAKC 475
A +GTGKTA F++ +L+++ R+ + L+L PTREL Q+ V L N
Sbjct: 261 CAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITT 320
Query: 476 HACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
+GG +V+ L + +++ TPGR+ D + + H ++I++ +LDEAD
Sbjct: 321 CLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEAD 374
>UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111;
Eumetazoa|Rep: ATP-dependent RNA helicase DDX25 - Homo
sapiens (Human)
Length = 483
Score = 106 bits (255), Expect = 4e-22
Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPCIQGRDVIAQAQSGTGKTATFSI 346
V+TF+++ LKEELL+GIYA GF +PS IQ+ A+ M +++IAQ+QSGTGKTA F +
Sbjct: 96 VKTFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVL 155
Query: 347 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQL 523
++L +++ Q L LAPT ELA Q +VV +G ++ + I G + R
Sbjct: 156 AMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIP---RGT 212
Query: 524 ESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
+ +++GTPG V D + + + I++FVLDEAD
Sbjct: 213 DITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEAD 250
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 106 bits (255), Expect = 4e-22
Identities = 51/151 (33%), Positives = 89/151 (58%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F + + ++LR + G+ +P+ +QQ I ++ +D++ ++Q+G+GKTA+F I + +
Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
+ + QALIL PTRELA Q+++ + +G K A G ++ + +L+ H+
Sbjct: 64 ANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHI 123
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVGTPGRV D I + L + + V+DEAD
Sbjct: 124 VVGTPGRVLDHIEKGTLPLDRLSYLVIDEAD 154
>UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 393
Score = 106 bits (254), Expect = 6e-22
Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+++ L LL + G ++PS IQ +AI P ++G+DV+ +Q+G+GKTA F + +LQ+
Sbjct: 22 FEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQK 81
Query: 362 IDTS--IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ + +ALIL PTRELA Q V LG L+ K GGT+ + ++ + GV
Sbjct: 82 LTEAGPAPGPRALILEPTRELAAQTAAVCRQLGRRLSLKTRVICGGTSREQQVQSVSDGV 141
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++V T GR+ D++ + L + VLDEAD
Sbjct: 142 DIIVATHGRLLDLVMQADLVLEHLTYLVLDEAD 174
>UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4;
Bacteria|Rep: ATP-dependent RNA helicase protein -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 413
Score = 106 bits (254), Expect = 6e-22
Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ +L + + + GF +P+ IQ ++I P + G DV+A AQ+GTGKTA F I +L
Sbjct: 3 FESYDLAPGIKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPVLNT 62
Query: 362 I----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+ + + L++APTRELA QI +V +G + + GG I +
Sbjct: 63 LINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAYTRLRTVCITGGVEQEAQIAAADY 122
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G+ ++V TPGR++D+I ++ + +K+ VLDEAD
Sbjct: 123 GIDILVATPGRMFDLIYQKHIKITRVKILVLDEAD 157
>UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein;
n=19; Alteromonadales|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 487
Score = 106 bits (254), Expect = 6e-22
Identities = 54/154 (35%), Positives = 92/154 (59%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
FD + L +L I G+ + + +QQ+ I ++G+D++A AQ+GTGKTA+F++ +L+Q
Sbjct: 24 FDTLGLSSPILNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVLEQ 83
Query: 362 IDTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
+ + +AL++ PTRELA Q+ + L K A GG N+ + +E G
Sbjct: 84 LSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 143
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V ++V TPGR++D+I + L +++ V+DEAD
Sbjct: 144 VDILVATPGRLFDIIGQFHLDLSSVTTLVIDEAD 177
>UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: DEAD/DEAH
box helicase-like - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 432
Score = 105 bits (253), Expect = 7e-22
Identities = 57/156 (36%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F+ + + + LL I G+EKP+ IQ RAI + DV A AQ+GTGKTA F + +LQ
Sbjct: 2 SFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQ 61
Query: 359 QI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
++ D R + L++APTREL+ QI + + + ++ +GG ++ + L+
Sbjct: 62 RLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKILK 121
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV +V+ TPGRV + + + L + +++FVLDEAD
Sbjct: 122 EGVDIVIATPGRVLEHVD-KGLSLSHVEIFVLDEAD 156
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 105 bits (253), Expect = 7e-22
Identities = 60/152 (39%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F ++L LL+ + GF +P+ IQ AI P + GRDV+A A +G+GKTA F + IL Q
Sbjct: 3 FSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPILHQ 62
Query: 362 -IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
ID +AL++ PTRELA QI + + L H A GG ++R GV
Sbjct: 63 LIDRPRGTTRALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAFRRGVD 122
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V++GTPGR+ D ++ VLDEAD
Sbjct: 123 VLIGTPGRLLDHFRAPYAKLAGLEHLVLDEAD 154
>UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2;
Cryptosporidium|Rep: DEAD-box RNA helicase -
Cryptosporidium hominis
Length = 518
Score = 105 bits (253), Expect = 7e-22
Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQ 358
+ D+NL +LL+GIY GF +PS IQ A+ + ++IAQA +G+GKTATF++++L
Sbjct: 114 WSDLNLSPDLLKGIYNKGFNRPSKIQAAALPLILNSPMNLIAQAHNGSGKTATFALAMLG 173
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
++DT I Q + L PTRELA+Q Q VV LG + + D G
Sbjct: 174 KVDTRIIHPQCMCLCPTRELARQNQDVVNELGKFTGITTWLVV----AQGDKYDKTIGSQ 229
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQR 652
+++ TPG++ D + +R+ +KL V+DEAD + R
Sbjct: 230 IIICTPGKMQDFLKKRSFPTEFMKLMVIDEADEMIDHR 267
>UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 475
Score = 105 bits (253), Expect = 7e-22
Identities = 55/84 (65%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +2
Query: 215 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQAL 394
+ + +YGFEKPS IQQ I+P I+G+D IAQAQSGTGKTATFSI+ LQ IDTS QAL
Sbjct: 47 QNVLSYGFEKPSPIQQCGIIPIIKGKDTIAQAQSGTGKTATFSIATLQVIDTSSPHTQAL 106
Query: 395 ILAPTRELAQQ-IQKVVIALGDHL 463
ILAPTRELAQQ I ++ LG +L
Sbjct: 107 ILAPTRELAQQTITRIFFILGVNL 130
Score = 79.8 bits (188), Expect = 6e-14
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +2
Query: 431 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIK 610
+KV++ LG+ L +AC GGT+ +ED ++L GV VVVGTPGRV D+I ++ L + +K
Sbjct: 186 KKVIMYLGEFLKVSAYACTGGTDPKEDRKRLREGVQVVVGTPGRVLDLIQKKTLVTDHLK 245
Query: 611 LFVLDEAD 634
LF+LDEAD
Sbjct: 246 LFILDEAD 253
>UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2;
Streptomyces|Rep: ATP-dependent RNA helicase -
Streptomyces coelicolor
Length = 740
Score = 105 bits (252), Expect = 1e-21
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF D+ L E ++R + G P IQ I + G+D++ + ++G+GKT +F + L
Sbjct: 62 TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 121
Query: 359 QID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+ T + +A+IL PTRELA Q+ + GD L K GGT++ I LE
Sbjct: 122 TLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALER 181
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV V+V TPGR+ D+I R A +++ VLDEAD
Sbjct: 182 GVDVLVATPGRLRDIINRGACSLENVQIAVLDEAD 216
>UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12;
Alphaproteobacteria|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 763
Score = 105 bits (252), Expect = 1e-21
Identities = 59/154 (38%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI---SI 352
F D+ L E + R I G+ P+ IQ +AI + GRDV+ AQ+GTGKTA+F++ I
Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
L R ++LIL PTRELA Q+ + + G +L IGG ++ + L G
Sbjct: 285 LSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSKG 344
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V V++ TPGR+ D+ R L ++ V+DEAD
Sbjct: 345 VDVLIATPGRLIDLFDRGGLLLTDTRILVIDEAD 378
>UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Blastopirellula marina DSM 3645
Length = 447
Score = 105 bits (252), Expect = 1e-21
Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Frame = +2
Query: 191 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID- 367
M L E + + + P+ IQ +AI ++G D+I AQ+GTGKTA F++ IL Q+D
Sbjct: 1 MQLSEAIQEALATEKYHTPTPIQGQAIPHLLEGSDLIGCAQTGTGKTAAFALPILNQLDL 60
Query: 368 --TSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ C Q L+L+PTRELA QI + G ++ + GG +R L+ GV
Sbjct: 61 DRSRADACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIFGGVGQNPQVRALKRGV 120
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
HV + TPGR+ D++ + + + K FVLDEAD
Sbjct: 121 HVAIATPGRLLDLMDQGYVDLSQAKTFVLDEAD 153
>UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;
n=6; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 41 - Arabidopsis thaliana (Mouse-ear cress)
Length = 505
Score = 105 bits (252), Expect = 1e-21
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 353 LQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
+ + T R A++LAPTREL Q++ LG L K +GG +
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQRXSRTRSM 673
+ +++ GV +++GTPGRV D++++ + + I FVLDE D ++QR R + M
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDC-MLQRGFRDQVM 282
>UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;
n=8; Viridiplantae|Rep: DEAD-box ATP-dependent RNA
helicase 21 - Arabidopsis thaliana (Mouse-ear cress)
Length = 733
Score = 105 bits (252), Expect = 1e-21
Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 353 LQQID-----TSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
L I + E + A+++APTRELAQQI++ + +L + + +GG ++ E
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++ G +V+ TPGR+ D + RR N VLDEAD
Sbjct: 432 QGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 473
>UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase dbp10 - Schizosaccharomyces pombe (Fission
yeast)
Length = 848
Score = 105 bits (252), Expect = 1e-21
Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 362 IDTSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ +++ +ALIL+P RELA Q KVV + + A +GG ++ E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VV TPGR + L ++I+ V DEAD
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEAD 223
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 105 bits (251), Expect = 1e-21
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Frame = +2
Query: 290 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 469
+D+I QA+SGTGKT FS+ L+ ID + Q LILAPTRE+A QIQ + A+G +
Sbjct: 4 QDLIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEMEG 63
Query: 470 -KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ H IGGT D ++L+ H+ VGTPGR+ +I L TI+LFVLDEAD
Sbjct: 64 LRSHVFIGGTLFGPDRQKLKK-CHIAVGTPGRIKQLIEYEVLKTGTIRLFVLDEAD 118
>UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=3;
Thermus thermophilus|Rep: Heat resistant RNA dependent
ATPase - Thermus thermophilus
Length = 510
Score = 105 bits (251), Expect = 1e-21
Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D LK E+L ++ G P+ IQ A+ ++G+D+I QA++GTGKT F++ I ++
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 362 IDTSI---RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
+ S R+ +AL+L PTRELA Q+ + A+ HL K A GGT + L G
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQKEALLRG 120
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VV TPGR D + + L + +++ VLDEAD
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 105 bits (251), Expect = 1e-21
Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V + D+ L E+++ I G+ + + +Q AI ++ +DVIA+A +GTGKT F I +
Sbjct: 11 VVNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPM 70
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLES 529
++ ID QAL+LAPTRELA QIQ + L + C+ GG + + I L+
Sbjct: 71 VEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKK 130
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VV TPGR+ D + RR + + ++ VLDEAD
Sbjct: 131 HPQIVVATPGRLMDHMKRRTVKLDKVETVVLDEAD 165
>UniRef50_A7U5W6 Cluster: DEAD-box helicase 1; n=8;
Aconoidasida|Rep: DEAD-box helicase 1 - Plasmodium
falciparum
Length = 457
Score = 105 bits (251), Expect = 1e-21
Identities = 68/174 (39%), Positives = 93/174 (53%), Gaps = 23/174 (13%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D LK ELLR I GFE PS +QQ I I G D++ QA+SG GKTA F +SILQQ
Sbjct: 57 FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ 116
Query: 362 IDTSIRE--------------------CQALILAPTRELAQQIQKVVIALGDHL-NAKCH 478
+DT+ + + L LA TRELA QI+ +L N +C
Sbjct: 117 LDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCE 176
Query: 479 ACIGGTNVREDIRQL-ESGV-HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GG ++ + I+ E + H+++GTPGR+ +I + L + I+ FVLDE D
Sbjct: 177 VVYGGISMNKHIKLFKEDNIPHIIIGTPGRILALIREKYLITDKIQHFVLDECD 230
>UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena
thermophila SB210|Rep: CLN3 protein - Tetrahymena
thermophila SB210
Length = 1138
Score = 104 bits (250), Expect = 2e-21
Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPC-IQGRDVIAQAQSGTGKTATF--- 340
+ +F + EEL+R I GFEKP+ IQ +A +PC + GRD++ A++G+GKT ++
Sbjct: 61 IVSFGHLGFDEELMRQITKLGFEKPTQIQCQA-LPCGLSGRDIVGVAKTGSGKTVSYLWP 119
Query: 341 -SISILQQIDTSIRECQ-ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 514
I IL Q + E LILAPTREL QQ+ N A +GG N E
Sbjct: 120 LLIHILDQRELEKNEGPIGLILAPTRELCQQVYTESKRYAKIYNISVGALLGGENKHEQW 179
Query: 515 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ L++GV +++ TPGR+ +MI ++A + V+DEAD
Sbjct: 180 KMLKAGVEILIATPGRLMEMIQKKATNLRRCTYVVIDEAD 219
>UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=20; Bacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 436
Score = 104 bits (250), Expect = 2e-21
Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
+TF + K L+ + F +P+ IQQ+ +G VI Q+Q+G+GKT + + L
Sbjct: 4 QTFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTL 63
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIAL------GDHLNAKCHACIGGTNVREDIR 517
+I+ E Q +I APTRELAQQI + ++ L + A+C IGGT+ + I
Sbjct: 64 NRINPGREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARC--LIGGTDKQRSIE 121
Query: 518 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+L+ H+VVGTPGR+ D++ +AL + ++DEAD
Sbjct: 122 KLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEAD 160
>UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein;
n=37; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 427
Score = 104 bits (250), Expect = 2e-21
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V +F ++ + L + + P+ IQ I + GRDV+A A +G+GKTA F++ +
Sbjct: 8 VASFAELGIIAPLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPL 67
Query: 353 LQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNA--KCHACIGGTNVRE 508
LQ++ + S + + L+L PTRELAQQ+ ++ H N K A GG +V
Sbjct: 68 LQRLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++ L +G V+V TPGR+ D++ AL N + VLDEAD
Sbjct: 128 QMQSLRAGADVLVATPGRLLDLLASNALKLNRVLALVLDEAD 169
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 104 bits (250), Expect = 2e-21
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
+TF+++ L L+ GF+ PS IQ I ++GRD+IA A++G+GKTA+F+I IL
Sbjct: 4 KTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPIL 63
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
Q+ A+IL PTRELA QI + A+G +N C IGG + L+
Sbjct: 64 NQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRP 123
Query: 536 HVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
H++V TPGR+ + + K VLDEAD
Sbjct: 124 HIIVATPGRLASHLNNGLKIALKFCKFLVLDEAD 157
>UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Type III restriction enzyme, res subunit family protein
- Tetrahymena thermophila SB210
Length = 440
Score = 104 bits (250), Expect = 2e-21
Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Frame = +2
Query: 233 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTR 412
G++ P+ IQ+ AI P ++ + VIA A++G+GKTATF+ ILQ + A++L R
Sbjct: 21 GYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPILQDLAKDPFGVFAIVLTANR 80
Query: 413 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRAL 592
ELA QI + G LN + +GG + + + +LE H+VVGTPGR DMI + +
Sbjct: 81 ELAMQISEQFTIFGSSLNLRVSTLVGGVDFNKQLSELERIPHIVVGTPGRTLDMIDKSPV 140
Query: 593 ---HANTIKLFVLDEAD 634
+ +K VLDEAD
Sbjct: 141 LKEYIENVKYLVLDEAD 157
>UniRef50_UPI0000DAE40A Cluster: hypothetical protein
Rgryl_01000266; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000266 - Rickettsiella
grylli
Length = 433
Score = 104 bits (249), Expect = 2e-21
Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Frame = +2
Query: 167 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 346
+++ F + N ++L GI G+ + IQ +AI +QGRDV+ AQ+GTGKTA +++
Sbjct: 10 ELLVNFTEFNFNTQILSGIQTQGYRTATPIQIKAIPAILQGRDVVGLAQTGTGKTAAYAL 69
Query: 347 SILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVREDIRQ 520
+LQQ+ + + +ALIL+PTR+LA QI + G + +C GG N +
Sbjct: 70 PLLQQLTEGPPGQLRALILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQL 129
Query: 521 LESGVHVVVGTPGRVYDMIT-RRALHANTIKLFVLDEAD 634
L GV ++V PGR+ D++ ++ +K VLDEAD
Sbjct: 130 LTGGVDIIVACPGRLLDLLQGKKNNFLQQVKHLVLDEAD 168
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 104 bits (249), Expect = 2e-21
Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F + L E L + G+ + + +Q + + G DV A+A++G+GKTA F I +L
Sbjct: 5 SFSSLALPAEQLSNLNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLD 64
Query: 359 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV 535
+I S QAL+L PTRELA Q+ K + L N K GG + + + L
Sbjct: 65 RIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHAP 124
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+VVGTPGR+ D + +++L +++K+ VLDEAD
Sbjct: 125 HIVVGTPGRIQDHLRKQSLALDSLKVLVLDEAD 157
>UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 432
Score = 104 bits (249), Expect = 2e-21
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 5/158 (3%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
+ F D+ L LLR + G+ KP+ IQ ++I ++GRD++ AQ+GTGKTA+F++ +L
Sbjct: 7 QAFADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPLL 66
Query: 356 QQIDTSIREC-----QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 520
++ + R + L+LAPTREL QI + H + GG + ++
Sbjct: 67 HRLAATPRPAPKNGARVLVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQVKA 126
Query: 521 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
LE GV ++V PGR+ D+I + + ++ VLDEAD
Sbjct: 127 LEEGVDIIVAAPGRLLDLIEQGLCDLSQLETLVLDEAD 164
>UniRef50_Q1I3W1 Cluster: ATP-dependent RNA helicase RhlE, DEAD box
family; n=21; Pseudomonadaceae|Rep: ATP-dependent RNA
helicase RhlE, DEAD box family - Pseudomonas entomophila
(strain L48)
Length = 634
Score = 104 bits (249), Expect = 2e-21
Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 10/162 (6%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F + L E L+R I A G+ +P+ +QQRAI +QGRD++ AQ+GTGKT F++ IL+
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 359 QI------DTS----IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
++ D S R+ + L+L PTRELA Q+ LN GG +
Sbjct: 62 RLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMNP 121
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++ + GV V+V PGR+ D+ + ++ + +++ VLDEAD
Sbjct: 122 QVQAMAKGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDEAD 163
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 104 bits (249), Expect = 2e-21
Identities = 56/158 (35%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F + L +L+ + + P IQ++AI ++G+D++ AQ+G+GKTA+F + ILQ
Sbjct: 10 SFATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTASFVLPILQ 69
Query: 359 QIDT----SIRECQALILAPTRELAQQIQKVVIALGDHL--NAKCHACIGGTNVREDIRQ 520
+ T R AL+L PTRELA Q+ +V A + L K A GG ++ + Q
Sbjct: 70 MLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQMIQ 129
Query: 521 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
L+ GV +++ TPGR+ D++ +A++ + +++ VLDEAD
Sbjct: 130 LQ-GVEILIATPGRLLDLVDSKAVYLSDVEVLVLDEAD 166
>UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella frigidimarina (strain NCIMB
400)
Length = 421
Score = 104 bits (249), Expect = 2e-21
Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 14/166 (8%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
+F D++L L+ + +++P+ IQ +AI + G+DV+A AQ+GTGKTA F++ +L
Sbjct: 2 SFADLSLHPILINRLAELKYQQPTPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPLLH 61
Query: 359 QI-----------DT---SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 496
Q+ DT + AL+L PTRELAQQ+ + + GG
Sbjct: 62 QLLTHQDNLAAQPDTQHINSTPITALVLVPTRELAQQVHSSIEQYAYGSSVTSVMVYGGV 121
Query: 497 NVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++ E IRQL +G H++V TPGR+ D++ +RAL + + V DEAD
Sbjct: 122 SIGEQIRQLANGTHILVATPGRLLDLLRKRALSLSQLTHLVFDEAD 167
>UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=2; Proteobacteria|Rep: ATP-dependent
RNA helicase, DEAD box family protein - Alteromonas
macleodii 'Deep ecotype'
Length = 441
Score = 104 bits (249), Expect = 2e-21
Identities = 51/153 (33%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
Frame = +2
Query: 188 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS----IL 355
D+ + +++ + + + IQ+R ++P IQG+D+IA +++G+GKT F + ++
Sbjct: 5 DLPVHHKIISKLESKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRLM 64
Query: 356 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
Q S ++ +ALILAPTRELA+Q+ ++ LN C +GG N + ++ L
Sbjct: 65 AQKALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRNP 124
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H++VGT GRV D + ++++ N ++L + DEAD
Sbjct: 125 HIIVGTAGRVADHLLDKSVYLNGLELLIFDEAD 157
>UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep:
RNA helicase - Guillardia theta (Cryptomonas phi)
Length = 381
Score = 104 bits (249), Expect = 2e-21
Identities = 55/151 (36%), Positives = 93/151 (61%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ LK +LL G+ G+E PS IQ++ I I +D++A++++GTGKT +F I ILQ
Sbjct: 17 FKDLKLKNDLLLGLNDLGYEHPSLIQEKIIPLAINNKDILARSKNGTGKTLSFLIPILQN 76
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
I + +++IL PTRELA QI ++ L ++ + + G + + D ++ ++
Sbjct: 77 IYSESYGIESIILVPTRELALQISSLLRKLSKYMK-NINLQVTGVDSKIDKNNID--FNI 133
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++GTPG++YD + + ++ T K VLDEAD
Sbjct: 134 LLGTPGKIYDCLCKNEVN-KTCKTLVLDEAD 163
>UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=4;
Sphingobacteriales|Rep: Possible ATP-dependent RNA
helicase - Cytophaga hutchinsonii (strain ATCC 33406 /
NCIMB 9469)
Length = 463
Score = 103 bits (248), Expect = 3e-21
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+++ L +LL I G+ +P+ IQ +AI + G D+I AQ+GTGKTA +++ IL +
Sbjct: 7 FEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPILMK 66
Query: 362 IDTSI-RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 538
I + +A+I PTREL QI+ + L + + + A GG + L+ GV
Sbjct: 67 IKYAQGHNPRAVIFGPTRELVMQIEIAMKQLAKYTDLRIVALYGGIGPKLQKEHLQKGVD 126
Query: 539 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++V TPGR D+ + +K VLDEAD
Sbjct: 127 IIVATPGRFLDLYLEEEIVLKEVKTMVLDEAD 158
>UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p -
Drosophila melanogaster (Fruit fly)
Length = 827
Score = 103 bits (248), Expect = 3e-21
Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F M L EL++GI G++ P+ IQ++ I ++GRDV+A A++G+GKTA F I + ++
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 362 IDTS--IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ + +ALIL+PTRELA Q K + LG + K +GG ++ + +
Sbjct: 101 LQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCP 160
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V+V TPGR + L N+I+ V DEAD
Sbjct: 161 DVIVATPGRFLHLCVEMDLKLNSIEYVVFDEAD 193
>UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=4;
Eukaryota|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 699
Score = 103 bits (248), Expect = 3e-21
Identities = 60/156 (38%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ L + +L GF KP+AIQ + + + GRD++ AQ+G+GKT + L
Sbjct: 124 FEQGGLPDYILEEANKQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYIAPALVH 183
Query: 362 I--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
I +R AL+LAPTRELAQQIQ+V G +NA GG IR LE
Sbjct: 184 ITHQDQLRRGDGPIALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRDLE 243
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G +V+ TPGR+ D + R + VLDEAD
Sbjct: 244 RGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEAD 279
>UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;
n=16; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
46 - Arabidopsis thaliana (Mouse-ear cress)
Length = 645
Score = 103 bits (248), Expect = 3e-21
Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 349
+F+ L ELLR +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I
Sbjct: 162 SFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM 221
Query: 350 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
LQ+I R L+L+PTRELA QIQ + G C GG ++++E
Sbjct: 222 HLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIE 281
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV +VV TPGR+ D++ + + + + VLDEAD
Sbjct: 282 RGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEAD 317
>UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;
n=5; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 789
Score = 103 bits (248), Expect = 3e-21
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 356 QQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+++ + + LIL PTRELA QI ++ L + KC +GG +VRE L
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 527 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 634
S +VV TPGR+ D + ++ + + + +LDEAD
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 323
>UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2;
Chaetomium globosum|Rep: ATP-dependent RNA helicase DRS1
- Chaetomium globosum (Soil fungus)
Length = 795
Score = 103 bits (248), Expect = 3e-21
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ +F M+L +LRG+ + GF KP+ IQ + I + G+DV+ A +G+GKTA F + I
Sbjct: 275 LSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPI 334
Query: 353 LQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 523
L+++ + + ++L PTRELA Q V L H + K +GG +++ +L
Sbjct: 335 LERLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGEL 394
Query: 524 ESGVHVVVGTPGRVYDMITRRALHA-NTIKLFVLDEAD 634
VV+ TPGR D + A A T+++ VLDEAD
Sbjct: 395 RLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEAD 432
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 103 bits (247), Expect = 4e-21
Identities = 51/153 (33%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D+ ++++L+ + P+ +Q+++I ++G+D++A AQ+GTGKTA F + I+Q
Sbjct: 9 FADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQA 68
Query: 362 IDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ R ALIL PTRELAQQ+ + +H + + GGT++ +LE G
Sbjct: 69 VQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEEGA 128
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+++ TPGR+ D + ++ + + VLDEAD
Sbjct: 129 DILIATPGRLLDHLFNGNVNISKTGVLVLDEAD 161
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 103 bits (247), Expect = 4e-21
Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = +2
Query: 281 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 460
+QGRD + QA++GTGKTA F + IL + + ALILAPTRELA QI+ +
Sbjct: 7 LQGRDCLIQAKTGTGKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRDFARY 63
Query: 461 LNAKCHACIGGTNVREDIRQLESG-VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
LN + A GGT V D++ L G V VV+GTPGR+ D+I R AL + ++ FVLDE D
Sbjct: 64 LNVRTFAFYGGTKVFGDLKVLRGGKVDVVIGTPGRIKDLIERGALKTDDVRYFVLDEVD 122
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 103 bits (247), Expect = 4e-21
Identities = 53/151 (35%), Positives = 85/151 (56%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F L EE+++ + + +P+ IQ++ I ++G+D+IA++++G+GKTA F+I I +
Sbjct: 6 FTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICES 65
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
I QAL+L PTRELA Q++ + +G K GG + L+ H+
Sbjct: 66 IVWEENLPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQKSHI 125
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VVGTPGRV D L + +K ++DEAD
Sbjct: 126 VVGTPGRVLDHCETGTLKCSNVKYVIIDEAD 156
>UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2;
Desulfitobacterium hafniense|Rep: DEAD/DEAH box
helicase-like - Desulfitobacterium hafniense (strain
DCB-2)
Length = 425
Score = 103 bits (247), Expect = 4e-21
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 6/156 (3%)
Frame = +2
Query: 185 DDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI 364
+++ + + + + A G+ + + IQ AI ++G D++ AQ+GTGKTA F+I ILQ +
Sbjct: 4 NELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSL 63
Query: 365 DTSI------RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
R+ +AL+LAPTRELA QI + A G +L + GG R+LE
Sbjct: 64 AMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLE 123
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G+ ++V TPGR+ D+I + + + ++ FVLDE D
Sbjct: 124 KGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETD 159
>UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7;
Trypanosomatidae|Rep: RNA helicase, putative -
Leishmania major
Length = 435
Score = 103 bits (247), Expect = 4e-21
Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D LK EL I GFE PS +Q +A+ + G D++AQA+SG GKTA F ++L+Q
Sbjct: 38 FQDFCLKSELANAIRENGFEHPSEVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQ 97
Query: 362 IDTSIR----ECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 526
++ + CQA++L RELA QI++ +L A GG E+++QL+
Sbjct: 98 VEKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLK 157
Query: 527 SGV-HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V ++VGTPGR+ +I +A +K FV+DE D
Sbjct: 158 KEVPAIIVGTPGRMKALIQNKAFDTTHVKWFVVDEFD 194
>UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|Rep:
MGC114699 protein - Xenopus laevis (African clawed frog)
Length = 758
Score = 103 bits (246), Expect = 5e-21
Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 358
TF DMNL LL+ I A F +P+ IQ+ I + G+D+ A A +GTGKTA F + +L+
Sbjct: 182 TFQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLE 241
Query: 359 QIDTSIREC---QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
++ RE + L+L PTREL Q+ V L +GG +V+ L S
Sbjct: 242 RLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALRS 301
Query: 530 GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
G V++ TPGR+ D + + N I++ +LDEAD
Sbjct: 302 GPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEAD 337
>UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 540
Score = 103 bits (246), Expect = 5e-21
Identities = 56/153 (36%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+++++ +LL I G+ + + IQ+++I ++G+D+ AQ+GTGKT F I ++
Sbjct: 3 FEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIHN 62
Query: 362 IDT-SIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGV 535
I T I+ AL+LAPTREL QI + L H + IGGT+ + + LE
Sbjct: 63 ILTKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKDLEGLN 122
Query: 536 HVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++V TPGR+ DMI ++ + ++ FVLDEAD
Sbjct: 123 GIIVATPGRLIDMIKSGSIDISNVEFFVLDEAD 155
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,722,109
Number of Sequences: 1657284
Number of extensions: 17095991
Number of successful extensions: 53511
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 49167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52050
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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