Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11g23
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 236 8e-63
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 234 3e-62
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 231 2e-61
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 221 5e-58
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 198 4e-51
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 142 2e-34
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 142 2e-34
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 140 6e-34
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 140 6e-34
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 136 1e-32
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 116 1e-26
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 116 1e-26
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 111 3e-25
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 111 3e-25
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 107 9e-24
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 105 3e-23
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 105 3e-23
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 103 8e-23
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 102 2e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 100 8e-22
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 100 8e-22
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 100 1e-21
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 99 1e-21
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 99 3e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 97 1e-20
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 97 1e-20
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 97 1e-20
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 96 2e-20
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 95 5e-20
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 94 9e-20
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 94 9e-20
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 93 2e-19
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 93 2e-19
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 92 3e-19
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 89 2e-18
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 88 6e-18
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 87 1e-17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 86 2e-17
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 85 4e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 84 7e-17
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 83 1e-16
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 83 1e-16
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 83 2e-16
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 80 2e-15
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 79 2e-15
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 79 2e-15
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 79 3e-15
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 78 5e-15
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 78 6e-15
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 77 8e-15
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 77 8e-15
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 76 2e-14
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 75 6e-14
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 73 2e-13
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 71 5e-13
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 70 1e-12
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 69 2e-12
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 61 8e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 58 4e-09
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 54 1e-07
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 4e-04
At2g04620.1 68415.m00470 cation efflux family protein potential ... 36 0.033
At3g10020.1 68416.m01202 expressed protein 33 0.23
At2g28600.1 68415.m03476 expressed protein 31 0.93
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.2
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 30 1.2
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 3.7
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 28 4.9
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 4.9
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 28 4.9
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.5
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 6.5
At2g43110.1 68415.m05352 expressed protein 28 6.5
At1g76010.1 68414.m08825 expressed protein 28 6.5
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 27 8.6
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 27 8.6
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 236 bits (578), Expect = 8e-63
Identities = 112/160 (70%), Positives = 135/160 (84%)
Frame = +2
Query: 155 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 334
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 335 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 514
TF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
Query: 515 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
R L++GVHVVVGTPGRV+DM+ R++L A+ IK+FVLDEAD
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEAD 191
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 234 bits (573), Expect = 3e-62
Identities = 110/163 (67%), Positives = 137/163 (84%)
Frame = +2
Query: 146 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 325
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 326 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 505
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+VR
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR 150
Query: 506 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
ED R L+SGVHVVVGTPGRV+D++ R++L A+ IK+FVLDEAD
Sbjct: 151 EDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEAD 193
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 231 bits (566), Expect = 2e-61
Identities = 109/160 (68%), Positives = 134/160 (83%)
Frame = +2
Query: 155 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 334
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 335 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 514
TF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQ 151
Query: 515 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
R L++GVHVVVGTPGRV+DM+ R++L + IK+FVLDEAD
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEAD 191
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 221 bits (539), Expect = 5e-58
Identities = 103/160 (64%), Positives = 128/160 (80%)
Frame = +2
Query: 155 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 334
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 335 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 514
++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +V EDI
Sbjct: 88 MIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 147
Query: 515 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
R+LE GVHVV GTPGRV DMI RR+L IKL +LDE+D
Sbjct: 148 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESD 187
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 198 bits (482), Expect = 4e-51
Identities = 87/154 (56%), Positives = 121/154 (78%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 353 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 532
Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG ++ EDI++LE G
Sbjct: 81 CQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
VH V GTPGRVYDMI R +L +KL VLDE+D
Sbjct: 141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESD 174
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 142 bits (344), Expect = 2e-34
Identities = 69/151 (45%), Positives = 98/151 (64%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGR+ D+ + + V+DEAD
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEAD 283
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 142 bits (344), Expect = 2e-34
Identities = 69/151 (45%), Positives = 98/151 (64%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGR+ D+ + + V+DEAD
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEAD 283
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 140 bits (340), Expect = 6e-34
Identities = 68/151 (45%), Positives = 98/151 (64%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGR+ D+ + + V+DEAD
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEAD 276
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 140 bits (340), Expect = 6e-34
Identities = 68/151 (45%), Positives = 98/151 (64%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGR+ D+ + + V+DEAD
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEAD 276
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 136 bits (329), Expect = 1e-32
Identities = 68/151 (45%), Positives = 95/151 (62%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
ID QA+IL PTRELA Q +V L +L + GGT++R+DI +L VH+
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 542 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+VGTPGR+ D+ + + V+DEAD
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEAD 306
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 116 bits (279), Expect = 1e-26
Identities = 68/154 (44%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 532
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+VVGTPGRV + + L ++ F+LDE D
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 200
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 116 bits (279), Expect = 1e-26
Identities = 68/154 (44%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 532
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 533 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
H+VVGTPGRV + + L ++ F+LDE D
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 200
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 111 bits (268), Expect = 3e-25
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Frame = +2
Query: 188 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 364
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 365 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
R L+LAPTRELA+Q++K L+ C GGT + + +RQL+
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDY 225
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
GV V VGTPGRV D++ R AL+ + ++ VLDEAD
Sbjct: 226 GVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEAD 260
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 111 bits (268), Expect = 3e-25
Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Frame = +2
Query: 188 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 364
D+ + E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 365 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 529
+ Q L+LAPTRELA+Q++K L+ C GGT + + +R+L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNY 237
Query: 530 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G+ V VGTPGR+ D++ R AL+ + ++ VLDEAD
Sbjct: 238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEAD 272
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 107 bits (256), Expect = 9e-24
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 13/170 (7%)
Frame = +2
Query: 164 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 343
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 344 ISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 487
I ILQ + + + + A +L+PTRELA QI + ALG ++ +C +
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLV 124
Query: 488 GGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEAD 634
GG + + L HV+V TPGR++D M + ++K VLDEAD
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEAD 174
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 105 bits (252), Expect = 3e-23
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 353 LQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
+ + T R A++LAPTREL Q++ LG L K +GG +
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADXNVVQRXSRTRSM 673
+ +++ GV +++GTPGRV D++++ + + I FVLDE D ++QR R + M
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDC-MLQRGFRDQVM 282
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 105 bits (252), Expect = 3e-23
Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 353 LQQID-----TSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 508
L I + E + A+++APTRELAQQI++ + +L + + +GG ++ E
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
Query: 509 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
++ G +V+ TPGR+ D + RR N VLDEAD
Sbjct: 432 QGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 473
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 103 bits (248), Expect = 8e-23
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 356 QQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+++ + + LIL PTRELA QI ++ L + KC +GG +VRE L
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 527 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 634
S +VV TPGR+ D + ++ + + + +LDEAD
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 323
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 102 bits (245), Expect = 2e-22
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 13/175 (7%)
Frame = +2
Query: 149 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 319
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 320 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 469
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 470 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
K GGT + + +R+LE GV ++V TPGR+ D++ R + I+ LDEAD
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEAD 321
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (242), Expect = 4e-22
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 349
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 350 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G +VV TPGR+ D++ R + I VLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (242), Expect = 4e-22
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 349
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 350 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G +VV TPGR+ D++ R + I VLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 101 bits (242), Expect = 4e-22
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 349
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 350 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G +VV TPGR+ D++ R + I VLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 100 bits (240), Expect = 8e-22
Identities = 57/156 (36%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 349
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 350 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+L+ R LILAPTRELA QIQ + G C GG +++LE
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 527 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G +VV TPGR+ D++ + + + L VLDEAD
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEAD 591
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 100 bits (240), Expect = 8e-22
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Frame = +2
Query: 158 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 337
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 338 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
F + ++ I ++ + +I APTRELA QI + A GG +
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
E ++L++G +VV TPGR+ DM+ +AL VLDEAD
Sbjct: 342 HEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEAD 385
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 100 bits (239), Expect = 1e-21
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 10/158 (6%)
Frame = +2
Query: 191 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID- 367
++L + L + G IQ+ ++P +QGRD+IA+A++GTGKT F I I++++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 368 -----TSIREC----QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 520
T+ R + L+LAPTRELA+Q++K + +L+ C GG +
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSA 224
Query: 521 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
L GV VVVGTPGR+ D+I R+L ++ VLDEAD
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEAD 262
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 99 bits (238), Expect = 1e-21
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Frame = +2
Query: 149 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 319
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 320 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 469
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 470 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
K GGT V + IR+LE GV ++V TPGR+ D++ R + ++ LDEAD
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEAD 308
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 98.7 bits (235), Expect = 3e-21
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKTATFSIS 349
F+D+NL EL++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 350 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT--NVREDIRQL 523
+L ++D ++RE QAL + PTRELA Q +V+ +G + + R
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGA 211
Query: 524 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
HVV+GTPG + + + L N +K+ V DEAD
Sbjct: 212 PVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEAD 248
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 96.7 bits (230), Expect = 1e-20
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Frame = +2
Query: 158 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 337
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 338 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
IR L GV +V+ TPGR+ DM+ + + + VLDEAD
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEAD 322
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 96.7 bits (230), Expect = 1e-20
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Frame = +2
Query: 158 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 337
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 338 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
IR L GV +V+ TPGR+ DM+ + + + VLDEAD
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEAD 322
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 96.7 bits (230), Expect = 1e-20
Identities = 49/154 (31%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 362 IDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 535
+ + + +ALIL+PTR+LA+Q K LG + + +GG ++ + +L G
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 536 HVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
V++ TPGR+ +++ + T++ V DEAD
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEAD 183
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 95.9 bits (228), Expect = 2e-20
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 362 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 541
+ AL++ PTRELA Q+ + ALG LN +C +GG ++ L S H+
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHI 179
Query: 542 VVGTPGRVYDMITRR----ALHANTIKLFVLDEAD 634
V+ TPGR+ ++ + + T K VLDEAD
Sbjct: 180 VITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEAD 213
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 94.7 bits (225), Expect = 5e-20
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 4/144 (2%)
Frame = +2
Query: 215 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIREC 385
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 386 QA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 562
L+L+PTRELA QIQ + G C GG ++++E GV +VV TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 563 VYDMITRRALHANTIKLFVLDEAD 634
+ D++ + + + + VLDEAD
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEAD 385
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 93.9 bits (223), Expect = 9e-20
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Frame = +2
Query: 158 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 337
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 338 FSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
+ + + ++ L+LAPTRELA QIQ+ G K GG
Sbjct: 153 YLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+R L+ GV +V+ TPGR+ DM+ + + VLDEAD
Sbjct: 213 GPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEAD 256
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 93.9 bits (223), Expect = 9e-20
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 10/206 (4%)
Frame = +2
Query: 47 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGT-LDTDWDQVVETFDDMNLKEELLRGI 223
S + + +D PE +G + + G ++ ++TF + NL E +L
Sbjct: 72 SEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCC 131
Query: 224 YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC------ 385
FEKPS IQ + GRD+I A++G+GKT F I + + ++
Sbjct: 132 KT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKK 189
Query: 386 ---QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 556
L+L+PTRELA QI V+ G+ K GG++ I + SGV +V+GTP
Sbjct: 190 VNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTP 249
Query: 557 GRVYDMITRRALHANTIKLFVLDEAD 634
GR+ D+I L + + VLDEAD
Sbjct: 250 GRLRDLIESNVLRLSDVSFVVLDEAD 275
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 93.1 bits (221), Expect = 2e-19
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 353 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEAD 313
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 93.1 bits (221), Expect = 2e-19
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 353 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 503 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEAD 313
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 92.3 bits (219), Expect = 3e-19
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Frame = +2
Query: 179 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SIS 349
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++G+GKT F ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 350 ILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 526
+L + S R +++ PTRELA Q + V L H + IGG N R + +++
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIA 209
Query: 527 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 634
SG ++V+ TPGR+ D + +A +K V+DEAD
Sbjct: 210 SGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEAD 246
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 89.0 bits (211), Expect = 2e-18
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Frame = +2
Query: 263 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 418
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 419 AQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA 598
Q++ LG L K +GG + + +++ GV +++GTPGRV D++++ +
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 599 NTIKLFVLDEADXNVVQRXSRTRSM 673
+ I FVLDE D ++QR R + M
Sbjct: 122 DNIMTFVLDEVDC-MLQRGFRDQVM 145
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 87.8 bits (208), Expect = 6e-18
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 14/168 (8%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 352
++ F DM LLR + G P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 353 L-----QQIDTSIRECQ---ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIG 490
+ ++I I + AL++ P+RELA+Q +++ V +L + + + CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 491 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G ++R + ++ GVH+VV TPGR+ D++ ++ + + +L LDEAD
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEAD 263
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 86.6 bits (205), Expect = 1e-17
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Frame = +2
Query: 293 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 469
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 470 KCHACIGGTNVR--EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
K GG N++ +D+ + E H+VVGTPGRV + + L ++ F+LDE D
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNEC-PHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 117
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 86.2 bits (204), Expect = 2e-17
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Frame = +2
Query: 158 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 337
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 338 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
F + +L+ I D E L++APTREL QQI + L +C GG+ V
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 503 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEAD 634
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD
Sbjct: 643 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEAD 689
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 85.0 bits (201), Expect = 4e-17
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Frame = +2
Query: 167 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 346
++VE F ++ L EE++ + E P+ IQ I ++ + V+ + +G+GKT + +
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 347 SILQQI---------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 499
I+Q + T R + ++L PTREL++Q+ +V ++ H + GG+
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSR 228
Query: 500 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+R L + + +VVGTPGR+ I + I VLDEAD
Sbjct: 229 IRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEAD 273
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 84.2 bits (199), Expect = 7e-17
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 8/167 (4%)
Frame = +2
Query: 158 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 337
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 338 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 502
F + +L+ I D E L++APTREL QQI + L C GG+ V
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGV 509
Query: 503 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEAD 634
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD
Sbjct: 510 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEAD 556
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 83.4 bits (197), Expect = 1e-16
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SI 346
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++G+GKT F ++
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 347 SILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 523
+L ++ + R L++ PTRELA Q V L + + IGG + + L
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEIL 273
Query: 524 ESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 634
GV+++V TPGR+ D + +K V+DEAD
Sbjct: 274 AKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEAD 311
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 83.4 bits (197), Expect = 1e-16
Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Frame = +2
Query: 173 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---- 340
++ F DM +L + G +P+ IQ + + + GRD+I A +G+GKT F
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 341 -SISILQQIDTSIRECQA---LILAPTRELAQQIQKVV------IALGDHLNAKCHACIG 490
I++ +++ I + LI+ P+RELA+Q +VV + + + CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 491 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
G ++R + ++ GVH+VV TPGR+ DM+ ++ + + + LDEAD
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEAD 312
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 82.6 bits (195), Expect = 2e-16
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 15/168 (8%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 356 QQI-------------DTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGG 493
+I + E QA+I+AP+REL QI ++V LG +GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 494 TN-VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
N +R++ ++ +VVGTPGR+ ++ LH + + VLDE D
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVD 277
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 79.8 bits (188), Expect = 2e-15
Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 24/201 (11%)
Frame = +2
Query: 113 SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPCIQG 289
S DG ++ + + + M L L++ IY F++P+ IQ+ + QG
Sbjct: 169 SCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG 228
Query: 290 RDVIAQAQSGTGKTATFSISILQQI-DTSIR----------ECQ---------ALILAPT 409
+DVI A++G+GKT F + ILQ++ D + E Q ALI+ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 410 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMIT--- 580
RELA Q+ + + +L+ K +GG + R+L+ +VV TPGR++++++
Sbjct: 289 RELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGE 348
Query: 581 RRALHANTIKLFVLDEADXNV 643
+ + +++ FVLDEAD V
Sbjct: 349 KHLVELHSLSFFVLDEADRMV 369
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 79.4 bits (187), Expect = 2e-15
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 349
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 350 ILQQIDT-----SIRECQALILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVRED 511
+L+ +++ + LIL PTRELA QI A L +H IGGT R D
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 512 IRQLES-GVHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEAD 634
++LES +++ TPGR+ D I ++ +KLF++DEAD
Sbjct: 497 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEAD 541
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 79.4 bits (187), Expect = 2e-15
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Frame = +2
Query: 197 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS- 373
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 374 -----IRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQL-ESG 532
+ +I++PTREL+ QI KV L N +GG V D+ L E G
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 533 VHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
++++GTPGR+ DM+ R L +++ +LDEAD
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEAD 177
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 79.0 bits (186), Expect = 3e-15
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 362 I--------DTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVREDI 514
+ D L++ PTRELA Q + I L H + IGGT + +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 515 RQLE-SGVHVVVGTPGRVYDMITRRALHANT---IKLFVLDEAD 634
R+L+ S ++V TPGR+ D I + A +K+ VLDEAD
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEAD 245
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 78.2 bits (184), Expect = 5e-15
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 349
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 350 ILQQIDT-----SIRECQALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVR 505
+L+ +++ + ALIL PTRELA QI K ++ D + + IGGT +
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFK 447
Query: 506 EDIRQLES-GVHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEAD 634
D ++LES +++ TPGR+ D I ++ +KLF++DEAD
Sbjct: 448 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEAD 494
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 77.8 bits (183), Expect = 6e-15
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Frame = +2
Query: 176 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
+TF ++ E++++ + F++P+ IQ A P I G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 356 QQI--------DTSIREC-QALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTNVR 505
Q++ S C + ++L PT ELA Q+ ++ + + GG R
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493
Query: 506 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 634
+ LE GV V++ TPGR ++ L + ++ +LDE D
Sbjct: 494 TQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVD 536
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 77.4 bits (182), Expect = 8e-15
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 13/209 (6%)
Frame = +2
Query: 47 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 226
SS+ E+ K S D P G T D+ + FD L L+ I
Sbjct: 341 SSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIK 398
Query: 227 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRE 382
GFE + +Q+ + +QG+DV+A+A++GTGKT F + ++ + D+
Sbjct: 399 DAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPP 458
Query: 383 CQALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTP 556
L++ PTRELA Q + L H + IGGT + + R++++ ++V TP
Sbjct: 459 IIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATP 518
Query: 557 GRVYDMITRRALHANT---IKLFVLDEAD 634
GR+ D I + A +K+ VLDEAD
Sbjct: 519 GRLKDHIENTSGFATRLMGVKVLVLDEAD 547
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 77.4 bits (182), Expect = 8e-15
Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 12/169 (7%)
Frame = +2
Query: 164 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 343
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 344 ISILQQI---DTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHAC-IGGTNV 502
+ +LQ++ D+ ++ A IL P+REL QQ+ V +L + + A + +
Sbjct: 102 LPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMS 161
Query: 503 REDIRQLESGV-HVVVGTPGRVYDMITRRALH----ANTIKLFVLDEAD 634
D+R +G+ ++V TP + L + ++ + VLDEAD
Sbjct: 162 ASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEAD 210
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 76.2 bits (179), Expect = 2e-14
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 10/204 (4%)
Frame = +2
Query: 53 ERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAY 232
+R++ + ++ K+ S ++ + ++ D V F + L + A
Sbjct: 58 KRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKF---RISAPLREKLKAN 114
Query: 233 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RE 382
G E IQ + G D++ +A++G GKT F + IL+ + R
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 383 CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 562
L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTPGR
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234
Query: 563 VYDMITRRALHANTIKLFVLDEAD 634
+ D I R+ L + ++ VLDEAD
Sbjct: 235 IKDHIERQNLDFSYLQFRVLDEAD 258
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 74.5 bits (175), Expect = 6e-14
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 9/176 (5%)
Frame = +2
Query: 134 MDPGTLDTDWDQVVETFDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQ 307
MD +T ++ F ++ L E+++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 308 AQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKVVIALGDHLNA 469
A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+ A
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-A 119
Query: 470 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
KC N E E G ++++GTPGR+ DM+ R L +++ +LDEAD
Sbjct: 120 KCREVEADMNTLE-----EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEAD 170
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 72.5 bits (170), Expect = 2e-13
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Frame = +2
Query: 182 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 361
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 362 I--------DTSIRECQALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDI 514
+ D AL++ PTRELA Q + L H + IGGT + +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 515 RQLESG-VHVVVGTPGRVYDMITRR---ALHANTIKLFVLDEAD 634
+++++ ++V TPGR+ D I A +K+ VLDEAD
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEAD 219
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 71.3 bits (167), Expect = 5e-13
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Frame = +2
Query: 203 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 382
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 383 CQALILAPTRELAQQIQKV--VIALGDHLNAK-C--HACIGGTNVREDIRQLES-GVHVV 544
QA+I+ PTREL Q+ KV ++A ++ K C A + G +R L++ ++
Sbjct: 145 VQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAIL 204
Query: 545 VGTPGRVYDMITRRALHANTIKLFVLDEAD 634
V T + M+ + +++++ V+DE D
Sbjct: 205 VATVASLCHMLEKHIFRIDSVRVLVVDEVD 234
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 70.1 bits (164), Expect = 1e-12
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Frame = +2
Query: 182 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 355
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 356 QQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI 514
+ + S + +I++PTREL+ QI V L N +GG V+ D+
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 515 RQLES-GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
+ +E G +V++GTPGR+ D++ R L +++ +LDEAD
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEAD 177
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 69.3 bits (162), Expect = 2e-12
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Frame = +2
Query: 233 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------AL 394
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ + + AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 395 ILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVHVVVGTPGRVYD 571
++ PTREL Q+ + + L + + GG ++ +L G+ +++ TPGR+ D
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
Query: 572 MITRRA--LHANTIKLFVLDEAD 634
+ A +H N ++ + DEAD
Sbjct: 169 HLKNTASFVHKN-LRWVIFDEAD 190
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 60.9 bits (141), Expect = 8e-10
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 5/192 (2%)
Frame = +2
Query: 74 PEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSA 253
P+DSK G S+D + GT+ + + V F + + ++ RG+ + +
Sbjct: 47 PKDSKIGKSEDGKN---------GTVFSRYAGV-RKFAQLPISDKTKRGLKDAKYVDMTD 96
Query: 254 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELA 421
+Q AI + GRD++ A++G+GKT F I IL+++ + +I++PTRELA
Sbjct: 97 VQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELA 156
Query: 422 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHA 598
Q V+ +G IGG + ++ ++++V PGR+ M
Sbjct: 157 AQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFEC 216
Query: 599 NTIKLFVLDEAD 634
+++ +LDEAD
Sbjct: 217 PQLQILILDEAD 228
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 58.4 bits (135), Expect = 4e-09
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Frame = +2
Query: 209 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID-TSIREC 385
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 386 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 565
+A+IL+P RELA Q + L N D +L V++ TP R+
Sbjct: 212 RAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRL 269
Query: 566 YDMITRRALHANTIKLFVLDEAD 634
I + + + ++ VLDE+D
Sbjct: 270 KRAIKAKKIDLSKVEYLVLDESD 292
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 53.6 bits (123), Expect = 1e-07
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 23/151 (15%)
Frame = +2
Query: 251 AIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQ 427
A+ I P RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 428 IQKVVIALGDHLNAKCHACIGGTNVREDIRQ---------------------LESGVHVV 544
++ V A+ + + +G +++ +I Q LES V ++
Sbjct: 110 VKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDIL 169
Query: 545 VGTPGRVYDMITR-RALHANTIKLFVLDEAD 634
V TPGR+ D I + ++ V+DE D
Sbjct: 170 VATPGRLMDHINNTKGFTLEHLRYLVVDETD 200
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 41.9 bits (94), Expect = 4e-04
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 21/182 (11%)
Frame = +2
Query: 152 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 331
DT + ++ + L + + + GF++PS Q I + G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 332 ATFSISILQQIDTSIRECQ--------------ALILAPTRELAQQIQKVVIALGDHLN- 466
+ I+ Q+ + + + +LIL P L +Q+ ++V L D
Sbjct: 132 HGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGN 191
Query: 467 --AKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI----TRRALHANTIKLFVLDE 628
+ A G + + ++V TP + + I RR +K V DE
Sbjct: 192 PLLRVEAVCGSQGWPDRLPD------IIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDE 245
Query: 629 AD 634
AD
Sbjct: 246 AD 247
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/67 (32%), Positives = 27/67 (40%)
Frame = -1
Query: 650 SGQHXHQLHQEQKV*WCWHEAHDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI 471
S H H+ H E H+ H H H+ EC H+H H H +C H
Sbjct: 586 SDSHKHEEHHE-------HDHHHHSHSHKHE-ECNHNHDHE----HQSHSHNHEECNHNH 633
Query: 470 *HSSDHQ 450
H SDHQ
Sbjct: 634 DHHSDHQ 640
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = -1
Query: 650 SGQHXHQLHQEQKV*WCWHEAHDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI 471
S H ++ H + E H H H+ H HHS H H +C H
Sbjct: 562 SHSHKNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHS------HSHKHEECNHN- 614
Query: 470 *HSSDHQELS 441
H +HQ S
Sbjct: 615 -HDHEHQSHS 623
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 92 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 265
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 266 AIMPCIQGR 292
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 392 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRVY 568
L L P++ A Q++ V AL + + G + I L+S +V TP R+
Sbjct: 200 LYLVPSQSKASQVRSVCKALKG-IGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLL 258
Query: 569 DMITRRALHANTIKLFVLDE 628
+++T + + + + L V+DE
Sbjct: 259 EIVTLKGVDISNVSLLVIDE 278
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +2
Query: 341 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 493
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +2
Query: 230 YGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 409
+G K A Q+ I + GRDV+ +G GK S+ Q+ +R L+++P
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPL 138
Query: 410 RELAQQIQKVVIALG 454
L Q + ALG
Sbjct: 139 LSLIQDQVMGLAALG 153
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 392 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 496
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -2
Query: 298 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 197
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 28.3 bits (60), Expect = 4.9
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Frame = +2
Query: 200 KEELLRGI-YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI 376
KE L++ + + +G Q AI + GRD +G GK SI QI
Sbjct: 21 KEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGK------SICYQIPALA 74
Query: 377 RECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQ-LESG---VHV 541
+ L+++P L ++ V+AL + + A+ + T+V+ I + L+SG V +
Sbjct: 75 KPGIVLVVSP---LIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRL 131
Query: 542 VVGTPGRVYD---MITRRALHA-NTIKLFVLDEA 631
+ TP + M+ R LH+ + L +DEA
Sbjct: 132 LYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEA 165
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 437 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 550
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 11 FPFSYCG*NMSYSSERRSEDWPED--SKNG 94
FPFS+ N S +S+RR+ WP+ SKNG
Sbjct: 16 FPFSHVSGNASLNSQRRT--WPKQYKSKNG 43
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 574 HIIYTTWSAHHHMNTTLQLANIFTDIGAT 488
H + T+ A H+N LQLAN GAT
Sbjct: 13 HYLLVTFPAQGHINPALQLANRLIHHGAT 41
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 359 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 493
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 500 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 625
V E + L+ V++ GTP R+ ++ AL + + + V+D
Sbjct: 191 VEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 47 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 145
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 194 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 286
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 194 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 286
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,246,859
Number of Sequences: 28952
Number of extensions: 380121
Number of successful extensions: 1307
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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