Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11g19
(609 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 241 3e-64
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 233 5e-62
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 232 1e-61
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 34 0.085
At4g31260.1 68417.m04437 hypothetical protein 30 1.4
At2g31890.1 68415.m03896 expressed protein 28 4.2
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 28 4.2
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 27 7.4
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr... 27 7.4
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 9.7
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 9.7
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 241 bits (589), Expect = 3e-64
Identities = 116/163 (71%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
Frame = +3
Query: 90 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 266
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 267 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 446
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120
Query: 447 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 575
S+A+ LSG+VKEILGT SVGCTV+G+ P DL ++INSG + I
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDI 163
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 233 bits (571), Expect = 5e-62
Identities = 112/165 (67%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
Frame = +3
Query: 90 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 266
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 267 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 446
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 447 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 581
S+A+ LSG+V+EILGT SVGCTV+G+ P DL +I G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 232 bits (568), Expect = 1e-61
Identities = 111/165 (67%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
Frame = +3
Query: 90 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 266
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 267 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 446
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 447 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 581
S+A+ LSG+V+EILGT SVGCTV+G+ P D+ +I G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 33.9 bits (74), Expect = 0.085
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = -3
Query: 556 LMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIF 377
+ +I CGG+PS + C+V P R+ ++ + I + ++ +L LC+++
Sbjct: 622 VFGNINLCGGIPS-LQLQPCSVEL-----PRRHSSVRKIITICVSAVMAALLLLCLCVVY 675
Query: 376 FCFLRSRGGSLRA 338
C+ + R S+RA
Sbjct: 676 LCWYKLRVKSVRA 688
>At4g31260.1 68417.m04437 hypothetical protein
Length = 63
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 595 IRNIYSSMVKAPLLMSSIRSCGGLPSTV 512
IR++Y VK+ + + IRSCGG+ ++V
Sbjct: 28 IRSLYPDKVKSEIPIQDIRSCGGVLASV 55
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 348 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 455
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -3
Query: 433 IFAMPITSSREMLPLCLIFFCFL 365
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 147 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNR 290
GE+ SSL P G P VG DDIA S W G+ + Q+T R
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADER 615
>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain; contains 2 predicted transmembrane domains
Length = 988
Score = 27.5 bits (58), Expect = 7.4
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 63 IKLN*VINKMPPKFD--PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKA 236
++ N + K+PP+ PN ++ N + GE+ +T + + L +S + I
Sbjct: 165 LEYNQLSGKIPPELGNLPNLKRLSNN--LSGEIPSTFAKLTTLTDLRISDNQFTGAIPDF 222
Query: 237 TSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 332
+WKGL+ +L +Q + +PSA L+
Sbjct: 223 IQNWKGLE---KLVIQ-ASGLVGPIPSAIGLL 250
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 147 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 245
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 147 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 245
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,424
Number of Sequences: 28952
Number of extensions: 299171
Number of successful extensions: 797
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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