Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g18
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    27   2.6  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    26   3.5  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    26   3.5  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   3.5  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    26   4.6  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   6.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   6.1  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   6.1  

>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 67  RHRSVDRDVKARGDEHARMSDSQA-HGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLS 243
           R +S+ R         ++M + ++ + +  S RRS  Y D    S   +  + E   + S
Sbjct: 288 RSKSLSRKTAGGSLRSSKMDNRRSKYADTPSPRRSRSYSDEDEESVYSSDVSTESSSQFS 347

Query: 244 KRSGVSNRPRAPT 282
            RS   ++P  PT
Sbjct: 348 SRSSEYSKPSRPT 360


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 150 CLTMCLRVRHTRVLVSASFYI 88
           CLT+CL VR T  L  AS  I
Sbjct: 470 CLTICLAVRETMPLTLASLII 490


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 521 TSYSPLSFGCVNSIPELNILPSIVLGCA 438
           T++    FG   ++ + N+LP I+ GCA
Sbjct: 188 TAFGLYHFGVAKTLWKRNLLPQILAGCA 215


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +1

Query: 67  RHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLSK 246
           R R  DRD + R        D +A  E     R+   P  +S  ++ +RD   RRR  S+
Sbjct: 150 RERDRDRD-RTRSSRFDDDDDDRAPYEESRLSRA---PSRASRYDDDDRDHRSRRRSRSR 205

Query: 247 RSGVSNRPR 273
           R G S   R
Sbjct: 206 RPGRSRSRR 214


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 314 GLLDEHAPDCIVGARGLFD 258
           G LDEHAP  + GA+   D
Sbjct: 179 GFLDEHAPSLLEGAQASID 197


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 67  RHRSVDRDVKARGDEHAR-MSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLS 243
           R   + R+  + G  HA+  S S +  E    R   F   S S +E+ + +A  RR+ L 
Sbjct: 336 REDRMGRNAASSGPSHAKPRSTSVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELR 395

Query: 244 K 246
           +
Sbjct: 396 R 396


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 548 NTVAEIPSATSYSPLSFGCVNSIPELNIL 462
           N   +  +ATSY  L+  CVN +   N+L
Sbjct: 839 NETTQSDTATSYEQLASVCVNELSGKNVL 867


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 257 YRTGPALLQCSPGRVRLVTRCHRPLQLRNLRKT 355
           YR G  L QCSP  V    +     + + ++KT
Sbjct: 743 YRRGRLLQQCSPSSVTKYLKYEEKFKRKRMKKT 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,678
Number of Sequences: 5004
Number of extensions: 46017
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)