Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g18
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 218 RRSVGDVSQSDLEYRTGPA 274
           RRS GD +Q+  E + G A
Sbjct: 402 RRSEGDTAQASAELQLGNA 420



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 425  GSTTNLVLSTTNVIRSSPS 369
            G+T  L L++ N I SSPS
Sbjct: 1468 GNTYQLYLTSHNKIGSSPS 1486


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 218 RRSVGDVSQSDLEYRTGPA 274
           RRS GD +Q+  E + G A
Sbjct: 402 RRSEGDTAQASAELQLGNA 420



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 425  GSTTNLVLSTTNVIRSSPS 369
            G+T  L L++ N I SSPS
Sbjct: 1464 GNTYQLYLTSHNKIGSSPS 1482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,433
Number of Sequences: 438
Number of extensions: 2904
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)