Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11g18
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44200.1 68416.m04739 protein kinase family protein contains ... 32 0.32
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 30 0.97
At2g31430.1 68415.m03840 invertase/pectin methylesterase inhibit... 29 1.7
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 29 2.2
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family... 29 2.2
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 3.0
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 28 3.9
At1g55870.1 68414.m06407 CAF1 family ribonuclease contains Pfam ... 28 3.9
At5g27860.1 68418.m03342 expressed protein 28 5.2
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s... 27 6.8
At1g71850.1 68414.m08303 expressed protein ; expression supporte... 27 6.8
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 27 9.0
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote... 27 9.0
At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q... 27 9.0
>At3g44200.1 68416.m04739 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 941
Score = 31.9 bits (69), Expect = 0.32
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Frame = +1
Query: 109 EHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLSKR----SGVSNR--P 270
EH D H + S+ +PD SS RD RL++ SGV N
Sbjct: 595 EHTTPDD---HRRSCHSEYSYSFPDISS-EMMIRRDEHSTSMRLTEIPDSVSGVQNTIAH 650
Query: 271 RAPTMQSGACXXXXXXXXXXXAQEPPKNAPKHQLGDDRITL 393
P + G+C Q N +HQ GDD+ T+
Sbjct: 651 HQPEREQGSCPTVLKDDSPATLQSYEPNTSQHQHGDDKFTV 691
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 30.3 bits (65), Expect = 0.97
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +1
Query: 64 RRHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLS 243
R R D+D R E + SDS+ E +R + G E+ RD + R+R
Sbjct: 79 RERRRRDKDRVKRRSERRKSSDSEDDVEEEDERDKRRVNEKERGHREHERDRGKDRKRDR 138
Query: 244 KRSGVSNRPR 273
+R ++ R
Sbjct: 139 EREERKDKER 148
>At2g31430.1 68415.m03840 invertase/pectin methylesterase inhibitor
family protein low similarity to pistil-specific gene
sts15 [Solanum tuberosum] GI:1616628; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 179
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 393 GRGQYEVCRRSFSVHGASQHNAWE---NV*FWD 482
GR + EVC+ ++ + A H AWE FWD
Sbjct: 94 GRRRIEVCKTNYGIASARFHTAWELGLQKSFWD 126
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +1
Query: 67 RHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLSK 246
R RS + K R ++ + + G RS S G YN++ R ++ +
Sbjct: 760 RSRSRSLETKNRSSRKNKLDEDRNTGSRRRRSRS----KSVEGKRSYNKETRSRDKKSKR 815
Query: 247 RSGVSNRPRAPTMQ 288
RSG R R+P+ +
Sbjct: 816 RSG--RRSRSPSSE 827
>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
protein
Length = 571
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -1
Query: 578 PPR*YSSIALNTVAEIPSA-TSYSPLSFGCVNSIPELNILPSIVLGCAVN*EGSTTNLVL 402
P + SS+A T ++I A T P S ++ E+NILP+ V + + +T ++
Sbjct: 285 PVKTTSSLAKPTSSQINIAPTPTKPTSTPAKQTLSEINILPTPVKPVSTLAKFPSTPAII 344
Query: 401 STTNVIRSSP 372
+T VI ++P
Sbjct: 345 DSTPVITATP 354
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 67 RHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRR 237
R + DV+ G EH R S +DRRS + + Y R+AE R R
Sbjct: 406 RSDAAANDVETSG-EHNRPDTSSPDWSKRNDRRSRERGEKEQEMDRYEREAERERSR 461
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = +1
Query: 61 PRRHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRL 240
P++ + ++ ++ RGD + + A E ++ D+ + SEE + +E ++L
Sbjct: 86 PKKKKKKNKKLQQRGDTNDEEDEVIAEEEEPKKKKKKQRKDTEAKSEEEEVEDKEEEKKL 145
Query: 241 SKRSGVSNR 267
+ S ++N+
Sbjct: 146 EETSIMTNK 154
>At1g55870.1 68414.m06407 CAF1 family ribonuclease contains Pfam
domain, PF04857: CAF1 family ribonuclease
Length = 584
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 136 AHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLSKR 249
++ ++ S R Y DS S E ++A++ R+RL++R
Sbjct: 287 SNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAER 324
>At5g27860.1 68418.m03342 expressed protein
Length = 177
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +1
Query: 64 RRHRSVDRD---VKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRR 234
R HR DRD +K R + S + + SD Y DSSS S + + R +
Sbjct: 27 RHHRRNDRDRDSLKVRKKSRST-SKKRRRRQHSSDSSDSSYSDSSSESSDSEHEKSRRHK 85
Query: 235 RLSKRSGVSNRPRA 276
+ K ++ R+
Sbjct: 86 KHEKPKKAKDKERS 99
>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
similarity to F-box protein FBL2 GI:6063090 from [Homo
sapiens]
Length = 942
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 164 LRSLIASPCA*ESDIRACSSPRAFTSRSTLRCLRGGDLYEPFFEDFVLDNC 12
L+SLI C + +R C+S A S R + +L P E LD C
Sbjct: 587 LKSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLELKCPRIEQICLDGC 637
>At1g71850.1 68414.m08303 expressed protein ; expression supported
by MPSS
Length = 470
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +1
Query: 82 DRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLSKRSG 255
D D KA D+ +S S + D F D + N+D E RR S RSG
Sbjct: 387 DTDAKAENDD---ISGSDVEDDRQGD---FVDDDEDDDEVDQNQDLERGRRNSSPRSG 438
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 172 FYPDSSSGSEEYNRDAEERRRRLSKR 249
FYP S SE +NR A+E++ R
Sbjct: 185 FYPPSPPDSEFFNRKAQEKKHNSDNR 210
>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: LUC7 N_terminus
Length = 402
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Frame = +1
Query: 64 RRHRSVDRDVKARGDEHARMSDSQAHGEAMSD--RRSF----FYPDSSSGSEEYNRDAEE 225
R+ RS +R+ K R R + + E D RRS + +Y+R
Sbjct: 316 RKERSKERNSKERESSKDREKEQETSREHRRDYDRRSRDRDRHHDRDREQDRDYDRSHSR 375
Query: 226 RRRRLSKRSGVSNRPR 273
RRR RS +RPR
Sbjct: 376 SRRRSRSRSRSRDRPR 391
>At2g34440.1 68415.m04225 MADS-box family protein similar to
SP|Q9XGJ4 MADS box protein GGM13 {Gnetum gnemon};
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 172
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 145 EAMSDRRSFFYPDSSSGSEEYNRDAEERRRRLSKRSGVSNR 267
+++++R Y DS SG EE + + + +RLS+R + N+
Sbjct: 63 DSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQ 103
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.130 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,598,752
Number of Sequences: 28952
Number of extensions: 253838
Number of successful extensions: 828
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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