Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11g17
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 57 2e-09
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 28 0.98
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 0.98
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 28 0.98
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 4.0
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 6.9
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 9.1
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 9.1
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 9.1
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 25 9.1
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 56.8 bits (131), Expect = 2e-09
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Frame = +1
Query: 235 PYATRKRFYKGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEP--LARVVAVEWDSQNE 408
P + +RF+K TA + + + LD R LK+P+G ++ V E LA ++A+EWD
Sbjct: 34 PQPSFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPS 93
Query: 409 T-ISQATMHLTALCNTALD-NPGKLTSHDIVN-YLLEHYPTDTLLFYSXXXXXXXXXXXX 579
T + Q + +T+L + A+D + K ++++ L+ TDT+L YS
Sbjct: 94 TSVRQHNLPITSLVSRAIDISQFKKEEKELLSTQLIRFLDTDTILIYSPETEYEGKLLEE 153
Query: 580 K---WTPILDWFQKTFNVK 627
+ W P+ + F+ V+
Sbjct: 154 QKENWWPLKETFENKLGVQ 172
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 28.3 bits (60), Expect = 0.98
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 181 SGISTLLKTRCTLCSIYRPYATRKRFYK 264
+G+S LL+TR LC IY A + RFYK
Sbjct: 567 NGVS-LLRTRAMLCHIYHE-ALQNRFYK 592
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 28.3 bits (60), Expect = 0.98
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +1
Query: 241 ATRKRFYKGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARVVAVEWDSQNETIS 417
A R+ FY A IQ+D+ + KT + NE L A E DSQ+ET+S
Sbjct: 111 AIRRMFYSFCA-IQDDSNISIYAIGTSSKTDSSIQAASPNEDLKSEGAQEIDSQSETVS 168
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 28.3 bits (60), Expect = 0.98
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 328 TPNGNVLTVGNEPLARVVAVEWDSQNETISQATMHLTALCNTALDNPGKLTS 483
T + VL + L R+ +WD Q ETIS A L +C A G++ S
Sbjct: 687 TESRKVLNIPLNDLRRMFHQQWDKQRETISVAENDL-RICQKARKFFGEIES 737
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 397 SQNETISQATMHLTALCNTALDNPGKLTSHDIV 495
S+N+T + +++ + L N A+D P T D+V
Sbjct: 612 SRNQTPTHSSIAVDTLSNVAVDQPAISTPSDVV 644
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 340 NVLTVGNEPLARVVAVEWDSQNETI 414
NVL V NEP A +A D +N+ I
Sbjct: 212 NVLRVVNEPTAAALAYGLDKKNDAI 236
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +1
Query: 286 DNKWEVTLDHRRLKTPNGNVLTVGNEPLARVVAVEWDSQNETISQATMHLTALCNT 453
DN + L ++ T NG V N ++ ++ S+ +S + LC T
Sbjct: 51 DNVFSAQLQSIQVNTDNGKVAVQSNGVSTKLRMAKYHSKYSALSSVFRYAGRLCGT 106
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 358 NEPLARVVAVEWDSQNETISQATMHL-TALCNTALDN 465
N+PLA VA + N I +AT+HL A+ N L++
Sbjct: 350 NDPLAFAVAGKVSLANGQIDEATVHLIRAVSNGHLES 386
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 488 SCDVNFPGLSRAVLHNAVKC 429
SC+++ S LHNA KC
Sbjct: 153 SCNISISNCSSVNLHNATKC 172
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 418 VKLFHFVNPILQQQHEQEVHSQRLIHSHL 332
VKL ++ I QHE E S+++IH L
Sbjct: 148 VKLNSSISSIRFTQHEFEAESEKIIHHSL 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,202
Number of Sequences: 5004
Number of extensions: 55056
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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